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MELO3C001111 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C001111
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionMADS-box transcription factor
Genome locationchr12:23157696..23158035
RNA-Seq ExpressionMELO3C001111
SyntenyMELO3C001111
Gene Ontology termsGO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000977 - RNA polymerase II regulatory region sequence-specific DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR002100 - Transcription factor, MADS-box
IPR033896 - MADS MEF2-like
IPR036879 - Transcription factor, MADS-box superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0055340.1 transcription factor CAULIFLOWER D-like isoform X2 [Cucumis melo var. makuwa]3.1e-40100Show/hide
Query:  MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSHDMDGTLARYRTDVGLPQSNHPHSRAL
        MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSHDMDGTLARYRTDVGLPQSNHPHSRAL
Subjt:  MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSHDMDGTLARYRTDVGLPQSNHPHSRAL

XP_004145150.1 truncated transcription factor CAULIFLOWER D [Cucumis sativus]3.1e-40100Show/hide
Query:  MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSHDMDGTLARYRTDVGLPQSNHPHSRAL
        MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSHDMDGTLARYRTDVGLPQSNHPHSRAL
Subjt:  MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSHDMDGTLARYRTDVGLPQSNHPHSRAL

XP_022923727.1 truncated transcription factor CAULIFLOWER D-like [Cucurbita moschata]4.4e-3996.51Show/hide
Query:  MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSHDMDGTLARYRTDVGLPQSNHPHSRAL
        MGRGKV+LKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDA+VALLIFSPSGKAYQFSSHDMDGTLARYR+DVGLPQSNHPHSRAL
Subjt:  MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSHDMDGTLARYRTDVGLPQSNHPHSRAL

XP_038895204.1 truncated transcription factor CAULIFLOWER D-like isoform X1 [Benincasa hispida]6.8e-4098.84Show/hide
Query:  MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSHDMDGTLARYRTDVGLPQSNHPHSRAL
        MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDA+VALLIFSPSGKAYQFSSHDMDGTLARYRTDVGLPQSNHPHSRAL
Subjt:  MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSHDMDGTLARYRTDVGLPQSNHPHSRAL

XP_038895205.1 truncated transcription factor CAULIFLOWER D-like isoform X2 [Benincasa hispida]6.8e-4098.84Show/hide
Query:  MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSHDMDGTLARYRTDVGLPQSNHPHSRAL
        MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDA+VALLIFSPSGKAYQFSSHDMDGTLARYRTDVGLPQSNHPHSRAL
Subjt:  MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSHDMDGTLARYRTDVGLPQSNHPHSRAL

TrEMBL top hitse value%identityAlignment
A0A5A7UJH6 Transcription factor CAULIFLOWER D-like isoform X21.5e-40100Show/hide
Query:  MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSHDMDGTLARYRTDVGLPQSNHPHSRAL
        MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSHDMDGTLARYRTDVGLPQSNHPHSRAL
Subjt:  MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSHDMDGTLARYRTDVGLPQSNHPHSRAL

A0A6J1E6Y4 truncated transcription factor CAULIFLOWER D-like2.1e-3996.51Show/hide
Query:  MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSHDMDGTLARYRTDVGLPQSNHPHSRAL
        MGRGKV+LKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDA+VALLIFSPSGKAYQFSSHDMDGTLARYR+DVGLPQSNHPHSRAL
Subjt:  MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSHDMDGTLARYRTDVGLPQSNHPHSRAL

A0A6J1KKG0 MADS-box transcription factor 6-like2.1e-3996.51Show/hide
Query:  MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSHDMDGTLARYRTDVGLPQSNHPHSRAL
        MGRGKV+LKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDA+VALLIFSPSGKAYQFSSHDMDGTLARYR+DVGLPQSNHPHSRAL
Subjt:  MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSHDMDGTLARYRTDVGLPQSNHPHSRAL

Q9AYR8 Putative MADS-box protein1.5e-40100Show/hide
Query:  MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSHDMDGTLARYRTDVGLPQSNHPHSRAL
        MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSHDMDGTLARYRTDVGLPQSNHPHSRAL
Subjt:  MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSHDMDGTLARYRTDVGLPQSNHPHSRAL

Q9M3U2 Putative transcription factor (Fragment)1.1e-38100Show/hide
Query:  GKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSHDMDGTLARYRTDVGLPQSNHPHSRAL
        GKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSHDMDGTLARYRTDVGLPQSNHPHSRAL
Subjt:  GKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSHDMDGTLARYRTDVGLPQSNHPHSRAL

SwissProt top hitse value%identityAlignment
O04067 Agamous-like MADS-box protein AGL9 homolog7.9e-2367.05Show/hide
Query:  MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQF-SSHDMDGTLARY-RTDVGLPQSNHPHSRAL
        MGRG+VELKRIEN  +RQVTF+KRRNGLLKKAYELSVLCDA+VAL+IFS  GK Y+F SS  M  TL RY + + G P+ N P   AL
Subjt:  MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQF-SSHDMDGTLARY-RTDVGLPQSNHPHSRAL

O22456 Developmental protein SEPALLATA 36.0e-2367.05Show/hide
Query:  MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQF-SSHDMDGTLARY-RTDVGLPQSNHPHSRAL
        MGRG+VELKRIEN  +RQVTF+KRRNGLLKKAYELSVLCDA+VAL+IFS  GK Y+F SS  M  TL RY + + G P+ N P   AL
Subjt:  MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQF-SSHDMDGTLARY-RTDVGLPQSNHPHSRAL

Q8LLR1 Agamous-like MADS-box protein MADS36.0e-2368.75Show/hide
Query:  MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSHDMDGTLARYRTDVGLPQSNH
        MGRG+VELKRIEN  +RQVTFSKRRNGLLKKAYELSVLCDA+VAL+IFS  GK Y+F S     TL RY+     PQ N+
Subjt:  MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSHDMDGTLARYRTDVGLPQSNH

Q9FIS1 MADS-box protein AGL424.6e-2374.29Show/hide
Query:  MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSHDMDGTLARYR
        M RGK+E+K+IEN TSRQVTFSKRRNGLLKKAYELSVLCDAQ++L+IFS  G+ Y+FSS DM  T+ RYR
Subjt:  MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSHDMDGTLARYR

Q9XJ60 MADS-box transcription factor 502.1e-2373.24Show/hide
Query:  MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSHDMDGTLARYRT
        M RGK ++KRIENPTSRQVTFSKRRNGLLKKA+ELSVLCDA+VAL++FSP GK Y+F+S     T+ RYRT
Subjt:  MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSHDMDGTLARYRT

Arabidopsis top hitse value%identityAlignment
AT1G24260.1 K-box region and MADS-box transcription factor family protein4.3e-2467.05Show/hide
Query:  MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQF-SSHDMDGTLARY-RTDVGLPQSNHPHSRAL
        MGRG+VELKRIEN  +RQVTF+KRRNGLLKKAYELSVLCDA+VAL+IFS  GK Y+F SS  M  TL RY + + G P+ N P   AL
Subjt:  MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQF-SSHDMDGTLARY-RTDVGLPQSNHPHSRAL

AT5G62165.1 AGAMOUS-like 423.3e-2474.29Show/hide
Query:  MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSHDMDGTLARYR
        M RGK+E+K+IEN TSRQVTFSKRRNGLLKKAYELSVLCDAQ++L+IFS  G+ Y+FSS DM  T+ RYR
Subjt:  MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSHDMDGTLARYR

AT5G62165.2 AGAMOUS-like 423.3e-2474.29Show/hide
Query:  MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSHDMDGTLARYR
        M RGK+E+K+IEN TSRQVTFSKRRNGLLKKAYELSVLCDAQ++L+IFS  G+ Y+FSS DM  T+ RYR
Subjt:  MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSHDMDGTLARYR

AT5G62165.3 AGAMOUS-like 423.3e-2474.29Show/hide
Query:  MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSHDMDGTLARYR
        M RGK+E+K+IEN TSRQVTFSKRRNGLLKKAYELSVLCDAQ++L+IFS  G+ Y+FSS DM  T+ RYR
Subjt:  MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSHDMDGTLARYR

AT5G62165.4 AGAMOUS-like 423.3e-2474.29Show/hide
Query:  MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSHDMDGTLARYR
        M RGK+E+K+IEN TSRQVTFSKRRNGLLKKAYELSVLCDAQ++L+IFS  G+ Y+FSS DM  T+ RYR
Subjt:  MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSHDMDGTLARYR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAGAGGTAAAGTTGAGCTGAAGAGAATTGAAAATCCGACAAGTCGGCAAGTGACATTCTCGAAGCGTCGGAATGGACTTTTGAAGAAAGCTTATGAACTCTCTGT
TCTTTGTGATGCCCAAGTTGCCCTTCTCATCTTTTCCCCTTCCGGCAAAGCCTACCAATTCTCTAGCCATGACATGGATGGAACCCTAGCAAGGTATAGGACTGACGTCG
GGCTACCACAATCCAACCATCCACATTCACGAGCTCTG
mRNA sequenceShow/hide mRNA sequence
ATGGGAAGAGGTAAAGTTGAGCTGAAGAGAATTGAAAATCCGACAAGTCGGCAAGTGACATTCTCGAAGCGTCGGAATGGACTTTTGAAGAAAGCTTATGAACTCTCTGT
TCTTTGTGATGCCCAAGTTGCCCTTCTCATCTTTTCCCCTTCCGGCAAAGCCTACCAATTCTCTAGCCATGACATGGATGGAACCCTAGCAAGGTATAGGACTGACGTCG
GGCTACCACAATCCAACCATCCACATTCACGAGCTCTG
Protein sequenceShow/hide protein sequence
MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSHDMDGTLARYRTDVGLPQSNHPHSRAL