; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MELO3C001377 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C001377
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionExopolygalacturonase
Genome locationchr05:1171924..1182329
RNA-Seq ExpressionMELO3C001377
SyntenyMELO3C001377
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0004650 - polygalacturonase activity (molecular function)
InterPro domainsIPR000743 - Glycoside hydrolase, family 28
IPR011050 - Pectin lyase fold/virulence factor
IPR012334 - Pectin lyase fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045594.1 exopolygalacturonase-like [Cucumis melo var. makuwa]1.1e-4796.97Show/hide
Query:  DQEYCPWNQCNRKVPSKIKISKVSFKNIRGTSATPVAVKLVCSQSNPCEGVEVADIDLTYSGSEGPIKSQCANVKPVISGKQNPPICAEPAPAGGPSSD
        DQEYCPWNQCNRKVPSKIKIS VSFKNIRGTSATPVAVK+VCSQSNPCEGVEVADIDLTYSGSEGPIKSQCANVKPVISGKQNPPIC EPAPAGGPSSD
Subjt:  DQEYCPWNQCNRKVPSKIKISKVSFKNIRGTSATPVAVKLVCSQSNPCEGVEVADIDLTYSGSEGPIKSQCANVKPVISGKQNPPICAEPAPAGGPSSD

TYJ96129.1 Exopolygalacturonase [Cucumis melo var. makuwa]4.9e-6440.96Show/hide
Query:  QVPSKIKISKVSFKNIRGTSATPVAVKLVCSQSNPCEGVEVADIDLTYSGSEGPIKSQCANVKPVISGKQNPPICAEPA-------------------PA
        +VPSKIKISKVSFKNIRGTSATPVAVKLVCSQSNPCEGVEVADIDLTYSGSEGPIKSQCANVKPVISGKQNPPICAEPA                   P 
Subjt:  QVPSKIKISKVSFKNIRGTSATPVAVKLVCSQSNPCEGVEVADIDLTYSGSEGPIKSQCANVKPVISGKQNPPICAEPA-------------------PA

Query:  G---------------------------------------------------------------------------------------------------
        G                                                                                                   
Subjt:  G---------------------------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  --------------------------------------DQEYCPWNQCNRKVPSKIKISKVSFKNIRGTSATPVAVKLVCSQSNPCEGVEVADIDLTYSG
                                              DQEYCPWNQCNRKVPSKIKISKVSFKNIRGTSATPVAVKLVCSQSNPCEGVEVADIDLTYSG
Subjt:  --------------------------------------DQEYCPWNQCNRKVPSKIKISKVSFKNIRGTSATPVAVKLVCSQSNPCEGVEVADIDLTYSG

Query:  SEGPIKSQCANVKPVISGKQNPPICAEPAPAGGPSSD
        SEGPIKSQCANVKPVISGKQNPPICAEPAPAGGPSSD
Subjt:  SEGPIKSQCANVKPVISGKQNPPICAEPAPAGGPSSD

XP_008449696.2 PREDICTED: LOW QUALITY PROTEIN: exopolygalacturonase-like [Cucumis melo]5.8e-49100Show/hide
Query:  DQEYCPWNQCNRKVPSKIKISKVSFKNIRGTSATPVAVKLVCSQSNPCEGVEVADIDLTYSGSEGPIKSQCANVKPVISGKQNPPICAEPAPAGGPSSD
        DQEYCPWNQCNRKVPSKIKISKVSFKNIRGTSATPVAVKLVCSQSNPCEGVEVADIDLTYSGSEGPIKSQCANVKPVISGKQNPPICAEPAPAGGPSSD
Subjt:  DQEYCPWNQCNRKVPSKIKISKVSFKNIRGTSATPVAVKLVCSQSNPCEGVEVADIDLTYSGSEGPIKSQCANVKPVISGKQNPPICAEPAPAGGPSSD

XP_008449697.2 PREDICTED: exopolygalacturonase-like [Cucumis melo]5.8e-49100Show/hide
Query:  DQEYCPWNQCNRKVPSKIKISKVSFKNIRGTSATPVAVKLVCSQSNPCEGVEVADIDLTYSGSEGPIKSQCANVKPVISGKQNPPICAEPAPAGGPSSD
        DQEYCPWNQCNRKVPSKIKISKVSFKNIRGTSATPVAVKLVCSQSNPCEGVEVADIDLTYSGSEGPIKSQCANVKPVISGKQNPPICAEPAPAGGPSSD
Subjt:  DQEYCPWNQCNRKVPSKIKISKVSFKNIRGTSATPVAVKLVCSQSNPCEGVEVADIDLTYSGSEGPIKSQCANVKPVISGKQNPPICAEPAPAGGPSSD

XP_008449943.2 PREDICTED: exopolygalacturonase-like, partial [Cucumis melo]5.8e-49100Show/hide
Query:  DQEYCPWNQCNRKVPSKIKISKVSFKNIRGTSATPVAVKLVCSQSNPCEGVEVADIDLTYSGSEGPIKSQCANVKPVISGKQNPPICAEPAPAGGPSSD
        DQEYCPWNQCNRKVPSKIKISKVSFKNIRGTSATPVAVKLVCSQSNPCEGVEVADIDLTYSGSEGPIKSQCANVKPVISGKQNPPICAEPAPAGGPSSD
Subjt:  DQEYCPWNQCNRKVPSKIKISKVSFKNIRGTSATPVAVKLVCSQSNPCEGVEVADIDLTYSGSEGPIKSQCANVKPVISGKQNPPICAEPAPAGGPSSD

TrEMBL top hitse value%identityAlignment
A0A1S3BMK3 exopolygalacturonase-like2.8e-49100Show/hide
Query:  DQEYCPWNQCNRKVPSKIKISKVSFKNIRGTSATPVAVKLVCSQSNPCEGVEVADIDLTYSGSEGPIKSQCANVKPVISGKQNPPICAEPAPAGGPSSD
        DQEYCPWNQCNRKVPSKIKISKVSFKNIRGTSATPVAVKLVCSQSNPCEGVEVADIDLTYSGSEGPIKSQCANVKPVISGKQNPPICAEPAPAGGPSSD
Subjt:  DQEYCPWNQCNRKVPSKIKISKVSFKNIRGTSATPVAVKLVCSQSNPCEGVEVADIDLTYSGSEGPIKSQCANVKPVISGKQNPPICAEPAPAGGPSSD

A0A1S3BML3 LOW QUALITY PROTEIN: exopolygalacturonase-like2.8e-49100Show/hide
Query:  DQEYCPWNQCNRKVPSKIKISKVSFKNIRGTSATPVAVKLVCSQSNPCEGVEVADIDLTYSGSEGPIKSQCANVKPVISGKQNPPICAEPAPAGGPSSD
        DQEYCPWNQCNRKVPSKIKISKVSFKNIRGTSATPVAVKLVCSQSNPCEGVEVADIDLTYSGSEGPIKSQCANVKPVISGKQNPPICAEPAPAGGPSSD
Subjt:  DQEYCPWNQCNRKVPSKIKISKVSFKNIRGTSATPVAVKLVCSQSNPCEGVEVADIDLTYSGSEGPIKSQCANVKPVISGKQNPPICAEPAPAGGPSSD

A0A1S3BN96 exopolygalacturonase-like2.8e-49100Show/hide
Query:  DQEYCPWNQCNRKVPSKIKISKVSFKNIRGTSATPVAVKLVCSQSNPCEGVEVADIDLTYSGSEGPIKSQCANVKPVISGKQNPPICAEPAPAGGPSSD
        DQEYCPWNQCNRKVPSKIKISKVSFKNIRGTSATPVAVKLVCSQSNPCEGVEVADIDLTYSGSEGPIKSQCANVKPVISGKQNPPICAEPAPAGGPSSD
Subjt:  DQEYCPWNQCNRKVPSKIKISKVSFKNIRGTSATPVAVKLVCSQSNPCEGVEVADIDLTYSGSEGPIKSQCANVKPVISGKQNPPICAEPAPAGGPSSD

A0A5A7TRZ0 Exopolygalacturonase-like5.3e-4896.97Show/hide
Query:  DQEYCPWNQCNRKVPSKIKISKVSFKNIRGTSATPVAVKLVCSQSNPCEGVEVADIDLTYSGSEGPIKSQCANVKPVISGKQNPPICAEPAPAGGPSSD
        DQEYCPWNQCNRKVPSKIKIS VSFKNIRGTSATPVAVK+VCSQSNPCEGVEVADIDLTYSGSEGPIKSQCANVKPVISGKQNPPIC EPAPAGGPSSD
Subjt:  DQEYCPWNQCNRKVPSKIKISKVSFKNIRGTSATPVAVKLVCSQSNPCEGVEVADIDLTYSGSEGPIKSQCANVKPVISGKQNPPICAEPAPAGGPSSD

A0A5D3BAU1 Exopolygalacturonase2.4e-6440.96Show/hide
Query:  QVPSKIKISKVSFKNIRGTSATPVAVKLVCSQSNPCEGVEVADIDLTYSGSEGPIKSQCANVKPVISGKQNPPICAEPA-------------------PA
        +VPSKIKISKVSFKNIRGTSATPVAVKLVCSQSNPCEGVEVADIDLTYSGSEGPIKSQCANVKPVISGKQNPPICAEPA                   P 
Subjt:  QVPSKIKISKVSFKNIRGTSATPVAVKLVCSQSNPCEGVEVADIDLTYSGSEGPIKSQCANVKPVISGKQNPPICAEPA-------------------PA

Query:  G---------------------------------------------------------------------------------------------------
        G                                                                                                   
Subjt:  G---------------------------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  --------------------------------------DQEYCPWNQCNRKVPSKIKISKVSFKNIRGTSATPVAVKLVCSQSNPCEGVEVADIDLTYSG
                                              DQEYCPWNQCNRKVPSKIKISKVSFKNIRGTSATPVAVKLVCSQSNPCEGVEVADIDLTYSG
Subjt:  --------------------------------------DQEYCPWNQCNRKVPSKIKISKVSFKNIRGTSATPVAVKLVCSQSNPCEGVEVADIDLTYSG

Query:  SEGPIKSQCANVKPVISGKQNPPICAEPAPAGGPSSD
        SEGPIKSQCANVKPVISGKQNPPICAEPAPAGGPSSD
Subjt:  SEGPIKSQCANVKPVISGKQNPPICAEPAPAGGPSSD

SwissProt top hitse value%identityAlignment
P24548 Exopolygalacturonase (Fragment)1.2e-2865.93Show/hide
Query:  DQEYCPWNQCNRKVPSKIKISKVSFKNIRGTSATPVAVKLVCSQSNPCEGVEVADIDLTYSGSEGPIKSQCANVKPVISGKQNPPICAEPA
        DQ YCP+NQC  +VPS +K+SK+SFKNI+GTS T  AVKLVCS+S PC GVE+ADIDLTYSG  GP  S C N+KP I GKQ P IC+  A
Subjt:  DQEYCPWNQCNRKVPSKIKISKVSFKNIRGTSATPVAVKLVCSQSNPCEGVEVADIDLTYSGSEGPIKSQCANVKPVISGKQNPPICAEPA

Q05967 Polygalacturonase9.1e-2945.14Show/hide
Query:  CSQSNPCEGVEVADIDLTYSGSEGPIKSQCANVKPVISGKQNPPICAEPAPAGDQEYCPWNQCNRKVPSKIKISKVSFKNIRGTSATPVAVKLVCSQSNP
        C+ +N   GV +     T+  S   + +       ++    NP +        DQ YCP+N+CN+ +PS++KISKVSF+NI+GTS T  AV L+ S+  P
Subjt:  CSQSNPCEGVEVADIDLTYSGSEGPIKSQCANVKPVISGKQNPPICAEPAPAGDQEYCPWNQCNRKVPSKIKISKVSFKNIRGTSATPVAVKLVCSQSNP

Query:  CEGVEVADIDLTYSGSEGPIKSQCANVKPVISGKQNPPICAEPA
        CEG+EV DID+TYSG EGP KS C N+KP + GKQNPP+C   A
Subjt:  CEGVEVADIDLTYSGSEGPIKSQCANVKPVISGKQNPPICAEPA

Q39766 Polygalacturonase1.9e-2642.66Show/hide
Query:  PCEGVEVADIDLTYSGSEGPIKSQCANVKPVISGKQNPPICAEPAPAG---DQEYCPWNQCNRKVPSKIKISKVSFKNIRGTSATPVAVKLVCSQSNPCE
        P EG+++++  +T + +   IK+        +S      I      +    DQ+YCPWN+C +   SK+K+S +SFKNIRGTSA P A+K +CS S+PC+
Subjt:  PCEGVEVADIDLTYSGSEGPIKSQCANVKPVISGKQNPPICAEPAPAG---DQEYCPWNQCNRKVPSKIKISKVSFKNIRGTSATPVAVKLVCSQSNPCE

Query:  GVEVADIDLTYSGSEGPIKSQCANVKPVISGKQNPPICAEPAP
         VE+ADID+ ++G+E P  SQC NVKP+  GK NP  C+ P P
Subjt:  GVEVADIDLTYSGSEGPIKSQCANVKPVISGKQNPPICAEPAP

Q39786 Polygalacturonase3.8e-2743.36Show/hide
Query:  PCEGVEVADIDLTYSGSEGPIKSQCANVKPVISGKQNPPICAEPAPAG---DQEYCPWNQCNRKVPSKIKISKVSFKNIRGTSATPVAVKLVCSQSNPCE
        P EG+++++  +T + +   IK+        +S      I      +    DQ+YCPWN+C +   SK+K+S +SFKNIRGTSA P A+K +CS S+PC+
Subjt:  PCEGVEVADIDLTYSGSEGPIKSQCANVKPVISGKQNPPICAEPAPAG---DQEYCPWNQCNRKVPSKIKISKVSFKNIRGTSATPVAVKLVCSQSNPCE

Query:  GVEVADIDLTYSGSEGPIKSQCANVKPVISGKQNPPICAEPAP
         VE+ADID+ ++G+E P  SQC NVKP+ SGK NP  C+ P P
Subjt:  GVEVADIDLTYSGSEGPIKSQCANVKPVISGKQNPPICAEPAP

W8P8Q3 Probable galacturan 1,4-alpha-galacturonidase SALK65.5e-2642.95Show/hide
Query:  CSQSNPCEGVEVADIDLTYSGSEGPIKSQCANVKPVISGKQNPPICAEPAPAGDQEYCPWNQCNRKVPSKIKISKVSFKNIRGTSATPVAVKLVCSQSNP
        CS ++   GV +     ++  S   +  +   V  V+    NP I        DQEYCP+N C  K PSK+K+SK+SFKN+ G + +   VKL+CS + P
Subjt:  CSQSNPCEGVEVADIDLTYSGSEGPIKSQCANVKPVISGKQNPPICAEPAPAGDQEYCPWNQCNRKVPSKIKISKVSFKNIRGTSATPVAVKLVCSQSNP

Query:  CEGVEVADIDLTYSGSEGPIKSQCANVKPVISGKQNPPICAEPAPAGGP
        C+GVE+ADIDLT+ G  G   SQC NVKP+++GKQNP  C  PA    P
Subjt:  CEGVEVADIDLTYSGSEGPIKSQCANVKPVISGKQNPPICAEPAPAGGP

Arabidopsis top hitse value%identityAlignment
AT3G07820.1 Pectin lyase-like superfamily protein1.5e-2656.04Show/hide
Query:  DQEYCPWNQCNRKVPSKIKISKVSFKNIRGTSATPVAVKLVCSQSNPCEGVEVADIDLTYSGSEGPIKSQCANVKPVISGKQNPPICAEPA
        DQEYCPWNQCN++  S IK+  +SFKNIRGTS    AVKL+CS+  PC+ VE+ DID+ Y+G++GP    C+NV P I G Q+P  C+ PA
Subjt:  DQEYCPWNQCNRKVPSKIKISKVSFKNIRGTSATPVAVKLVCSQSNPCEGVEVADIDLTYSGSEGPIKSQCANVKPVISGKQNPPICAEPA

AT3G07830.1 Pectin lyase-like superfamily protein3.1e-2452.22Show/hide
Query:  DQEYCPWNQCNRKVPSKIKISKVSFKNIRGTSATPVAVKLVCSQSNPCEGVEVADIDLTYSGSEGPIKSQCANVKPVISGKQNPPICAEP
        DQEYCPWNQCN++  S IK++ +SF+ IRGTS    AVKL+CS+  PCE V+V DI++ Y+G++GP    C+NV+P + G Q P  C  P
Subjt:  DQEYCPWNQCNRKVPSKIKISKVSFKNIRGTSATPVAVKLVCSQSNPCEGVEVADIDLTYSGSEGPIKSQCANVKPVISGKQNPPICAEP

AT3G07840.1 Pectin lyase-like superfamily protein2.8e-2553Show/hide
Query:  DQEYCPWNQCNRKVPSKIKISKVSFKNIRGTSATPVAVKLVCSQSNPCEGVEVADIDLTYSGSEGPIKSQCANVKPVISGKQNPPIC-AEPAPAGGPSSD
        DQEYCPWNQCN++ PS IK+  +SFKNIRGTS    AVKL+CS+++PC  VE+ +I+L Y G++GP    C+NV P + G QNP  C A P P      D
Subjt:  DQEYCPWNQCNRKVPSKIKISKVSFKNIRGTSATPVAVKLVCSQSNPCEGVEVADIDLTYSGSEGPIKSQCANVKPVISGKQNPPIC-AEPAPAGGPSSD

AT3G14040.1 Pectin lyase-like superfamily protein2.8e-2554.26Show/hide
Query:  DQEYCPWNQCNRKVPSKIKISKVSFKNIRGTSATPVAVKLVCSQSNPCEGVEVADIDLTYSGSEGPIKSQCANVKPVISGKQNPPICAEPAPAG
        DQEYCP+  C   VPSK+K+S V+ KNI+GTSAT VAVKL+CS+  PC  + ++DI+L ++G EGP  S C+N+KP++SGK  P  C E A  G
Subjt:  DQEYCPWNQCNRKVPSKIKISKVSFKNIRGTSATPVAVKLVCSQSNPCEGVEVADIDLTYSGSEGPIKSQCANVKPVISGKQNPPICAEPAPAG

AT5G48140.1 Pectin lyase-like superfamily protein4.3e-2654.44Show/hide
Query:  DQEYCPWNQCNRKVPSKIKISKVSFKNIRGTSATPVAVKLVCSQSNPCEGVEVADIDLTYSGSEGPIKSQCANVKPVISGKQNPPICAEP
        DQEYCPWNQCN++ PS IK++ +SFK IRGTS    AVKL+CS+  PC+ VEV D+++ Y+G++GP   QC+NV P + G Q P  C+ P
Subjt:  DQEYCPWNQCNRKVPSKIKISKVSFKNIRGTSATPVAVKLVCSQSNPCEGVEVADIDLTYSGSEGPIKSQCANVKPVISGKQNPPICAEP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CAGGTTCCATCTAAAATTAAGATCAGCAAAGTAAGCTTCAAGAATATAAGAGGCACATCTGCGACTCCAGTTGCAGTTAAACTTGTTTGCAGTCAAAGTAATCCA
TGTGAGGGAGTGGAAGTTGCTGATATTGACCTCACTTATAGTGGAAGTGAAGGTCCAATTAAATCTCAGTGTGCAAATGTGAAACCCGTCATTTCAGGGAAACAA
AATCCTCCAATCTGTGCTGAACCCGCACCGGCTGGTGACCAAGAATATTGTCCATGGAACCAATGCAACCGAAAGGTTCCATCAAAAATTAAGATCAGCAAAGTA
AGCTTCAAGAATATCAGAGGCACATCTGCAACTCCGGTTGCAGTCAAACTTGTTTGCAGTCAAAGTAATCCATGTGAGGGAGTGGAAGTTGCTGATATTGACCTC
ACTTATAGTGGAAGTGAAGGTCCAATTAAGTCTCAGTGTGCAAATGTGAAACCCGTCATTTCAGGGAAACAAAATCCTCCAATCTGTGCTGAACCTGCACCAGCT
GGTGGTCCATCTTCCGATTGA
mRNA sequenceShow/hide mRNA sequence
CAGGTTCCATCTAAAATTAAGATCAGCAAAGTAAGCTTCAAGAATATAAGAGGCACATCTGCGACTCCAGTTGCAGTTAAACTTGTTTGCAGTCAAAGTAATCCA
TGTGAGGGAGTGGAAGTTGCTGATATTGACCTCACTTATAGTGGAAGTGAAGGTCCAATTAAATCTCAGTGTGCAAATGTGAAACCCGTCATTTCAGGGAAACAA
AATCCTCCAATCTGTGCTGAACCCGCACCGGCTGGTGACCAAGAATATTGTCCATGGAACCAATGCAACCGAAAGGTTCCATCAAAAATTAAGATCAGCAAAGTA
AGCTTCAAGAATATCAGAGGCACATCTGCAACTCCGGTTGCAGTCAAACTTGTTTGCAGTCAAAGTAATCCATGTGAGGGAGTGGAAGTTGCTGATATTGACCTC
ACTTATAGTGGAAGTGAAGGTCCAATTAAGTCTCAGTGTGCAAATGTGAAACCCGTCATTTCAGGGAAACAAAATCCTCCAATCTGTGCTGAACCTGCACCAGCT
GGTGGTCCATCTTCCGATTGA
Protein sequenceShow/hide protein sequence
QVPSKIKISKVSFKNIRGTSATPVAVKLVCSQSNPCEGVEVADIDLTYSGSEGPIKSQCANVKPVISGKQNPPICAEPAPAGDQEYCPWNQCNRKVPSKIKISKV
SFKNIRGTSATPVAVKLVCSQSNPCEGVEVADIDLTYSGSEGPIKSQCANVKPVISGKQNPPICAEPAPAGGPSSD