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MELO3C001992 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C001992
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionChlorophyll a-b binding protein, chloroplastic
Genome locationchr12:25597998..25598553
RNA-Seq ExpressionMELO3C001992
SyntenyMELO3C001992
Gene Ontology termsGO:0009416 - response to light stimulus (biological process)
GO:0009768 - photosynthesis, light harvesting in photosystem I (biological process)
GO:0018298 - protein-chromophore linkage (biological process)
GO:0009522 - photosystem I (cellular component)
GO:0009523 - photosystem II (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0016168 - chlorophyll binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR001344 - Chlorophyll A-B binding protein, plant and chromista
IPR022796 - Chlorophyll A-B binding protein
IPR023329 - Chlorophyll a/b binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022137160.1 chlorophyll a-b binding protein P4, chloroplastic-like [Momordica charantia]1.0e-3593.51Show/hide
Query:  YSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLASLGLIVQHNVPGKGPFDNILQHISDPWHNTIVQTLRG
        YSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLA LG IVQHNV GKGPFDN LQHISDPWHNTI+QTLRG
Subjt:  YSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLASLGLIVQHNVPGKGPFDNILQHISDPWHNTIVQTLRG

XP_022949090.1 chlorophyll a-b binding protein P4, chloroplastic-like [Cucurbita moschata]2.1e-3692.41Show/hide
Query:  QQYSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLASLGLIVQHNVPGKGPFDNILQHISDPWHNTIVQTLRG
        +QYSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLA LG I+QHNV GKGPFDN LQHISDPWHNTIVQTLRG
Subjt:  QQYSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLASLGLIVQHNVPGKGPFDNILQHISDPWHNTIVQTLRG

XP_022998805.1 chlorophyll a-b binding protein P4, chloroplastic-like [Cucurbita maxima]2.7e-3691.14Show/hide
Query:  QQYSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLASLGLIVQHNVPGKGPFDNILQHISDPWHNTIVQTLRG
        +QYSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLA LG I+QHNV GKGPFDN LQHISDPWHNT+VQTLRG
Subjt:  QQYSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLASLGLIVQHNVPGKGPFDNILQHISDPWHNTIVQTLRG

XP_023524863.1 chlorophyll a-b binding protein P4, chloroplastic-like [Cucurbita pepo subsp. pepo]2.1e-3692.41Show/hide
Query:  QQYSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLASLGLIVQHNVPGKGPFDNILQHISDPWHNTIVQTLRG
        +QYSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLA LG I+QHNV GKGPFDN LQHISDPWHNTIVQTLRG
Subjt:  QQYSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLASLGLIVQHNVPGKGPFDNILQHISDPWHNTIVQTLRG

XP_038894825.1 chlorophyll a-b binding protein P4, chloroplastic-like [Benincasa hispida]1.6e-3693.67Show/hide
Query:  QQYSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLASLGLIVQHNVPGKGPFDNILQHISDPWHNTIVQTLRG
        +QYSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLA LG IVQHNV GKGPFDN LQHISDPWHNTIVQTLRG
Subjt:  QQYSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLASLGLIVQHNVPGKGPFDNILQHISDPWHNTIVQTLRG

TrEMBL top hitse value%identityAlignment
A0A314YV68 Chlorophyll a-b binding protein, chloroplastic6.6e-3689.87Show/hide
Query:  QQYSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLASLGLIVQHNVPGKGPFDNILQHISDPWHNTIVQTLRG
        +QYSLPPN+VGYPGGIFNPLNF PTLEAKEKEIANGRLAMLA LGL+VQHNV GKGPFDN+LQH+SDPWHNTIVQTLRG
Subjt:  QQYSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLASLGLIVQHNVPGKGPFDNILQHISDPWHNTIVQTLRG

A0A6J1C5V9 Chlorophyll a-b binding protein, chloroplastic5.1e-3693.51Show/hide
Query:  YSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLASLGLIVQHNVPGKGPFDNILQHISDPWHNTIVQTLRG
        YSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLA LG IVQHNV GKGPFDN LQHISDPWHNTI+QTLRG
Subjt:  YSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLASLGLIVQHNVPGKGPFDNILQHISDPWHNTIVQTLRG

A0A6J1GBT1 Chlorophyll a-b binding protein, chloroplastic1.0e-3692.41Show/hide
Query:  QQYSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLASLGLIVQHNVPGKGPFDNILQHISDPWHNTIVQTLRG
        +QYSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLA LG I+QHNV GKGPFDN LQHISDPWHNTIVQTLRG
Subjt:  QQYSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLASLGLIVQHNVPGKGPFDNILQHISDPWHNTIVQTLRG

A0A6J1KDI3 Chlorophyll a-b binding protein, chloroplastic1.3e-3691.14Show/hide
Query:  QQYSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLASLGLIVQHNVPGKGPFDNILQHISDPWHNTIVQTLRG
        +QYSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLA LG I+QHNV GKGPFDN LQHISDPWHNT+VQTLRG
Subjt:  QQYSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLASLGLIVQHNVPGKGPFDNILQHISDPWHNTIVQTLRG

M5WBL1 Chlorophyll a-b binding protein, chloroplastic1.5e-3588.61Show/hide
Query:  QQYSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLASLGLIVQHNVPGKGPFDNILQHISDPWHNTIVQTLRG
        +QYSLPPN+VGYPGGIFNPLNF PTLEAKEKEIANGRLAMLA LG +VQHNV GKGPFDN+LQH+SDPWHNTIVQTLRG
Subjt:  QQYSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLASLGLIVQHNVPGKGPFDNILQHISDPWHNTIVQTLRG

SwissProt top hitse value%identityAlignment
P27521 Chlorophyll a-b binding protein 4, chloroplastic3.0e-3381.58Show/hide
Query:  QQYSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLASLGLIVQHNVPGKGPFDNILQHISDPWHNTIVQT
        +QYSLP  +VGYPGGIFNPLNF PT EAKEKE+ANGRLAMLA LG +VQHNV GKGPF+N+LQH+SDPWHNTIVQT
Subjt:  QQYSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLASLGLIVQHNVPGKGPFDNILQHISDPWHNTIVQT

Q36718 Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment)1.2e-2970.89Show/hide
Query:  QQYSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLASLGLIVQHNVPGKGPFDNILQHISDPWHNTIVQTLRG
        + YSLPP++ GYPG +FNPLNF P LE KEKE+ANGRLAMLA LG +VQHNV GKGPF+N+ QH++DPWHNTI+QT+ G
Subjt:  QQYSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLASLGLIVQHNVPGKGPFDNILQHISDPWHNTIVQTLRG

Q9C639 Photosystem I chlorophyll a/b-binding protein 5, chloroplastic1.4e-1452.78Show/hide
Query:  GYPGG-IFNPLNFEPTLEA----KEKEIANGRLAMLASLGLIVQHNVPGKGPFDNILQHISDPWHNTIVQTL
        GYPGG + NPL     ++     K KEI NGRLAM+A LG  VQ +V   GP DN+++H+S+PWH TI+QTL
Subjt:  GYPGG-IFNPLNFEPTLEA----KEKEIANGRLAMLASLGLIVQHNVPGKGPFDNILQHISDPWHNTIVQTL

Q9SDM1 Chlorophyll a-b binding protein 1B-21, chloroplastic3.4e-1352.78Show/hide
Query:  PNDVGYPGGIFNPLNF--EPTL--EAKEKEIANGRLAMLASLGLIVQHNV-PGKGPFDNILQHISDPWHNTI
        P    YPGG F+PL F  +P    E K KEI NGRLAMLA +G  VQ +  PG GP +N+  H++DPWHN I
Subjt:  PNDVGYPGGIFNPLNF--EPTL--EAKEKEIANGRLAMLASLGLIVQHNV-PGKGPFDNILQHISDPWHNTI

Q9SQL2 Chlorophyll a-b binding protein P4, chloroplastic6.4e-3686.08Show/hide
Query:  QQYSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLASLGLIVQHNVPGKGPFDNILQHISDPWHNTIVQTLRG
        +QYSLP  +VGYPGGIFNPLNF PTLEAKEKEIANGRLAMLA LG I+QHNV GKGPFDN+LQHISDPWHNTIVQTL G
Subjt:  QQYSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLASLGLIVQHNVPGKGPFDNILQHISDPWHNTIVQTLRG

Arabidopsis top hitse value%identityAlignment
AT1G45474.1 photosystem I light harvesting complex gene 59.8e-1652.78Show/hide
Query:  GYPGG-IFNPLNFEPTLEA----KEKEIANGRLAMLASLGLIVQHNVPGKGPFDNILQHISDPWHNTIVQTL
        GYPGG + NPL     ++     K KEI NGRLAM+A LG  VQ +V   GP DN+++H+S+PWH TI+QTL
Subjt:  GYPGG-IFNPLNFEPTLEA----KEKEIANGRLAMLASLGLIVQHNVPGKGPFDNILQHISDPWHNTIVQTL

AT1G45474.2 photosystem I light harvesting complex gene 59.8e-1652.78Show/hide
Query:  GYPGG-IFNPLNFEPTLEA----KEKEIANGRLAMLASLGLIVQHNVPGKGPFDNILQHISDPWHNTIVQTL
        GYPGG + NPL     ++     K KEI NGRLAM+A LG  VQ +V   GP DN+++H+S+PWH TI+QTL
Subjt:  GYPGG-IFNPLNFEPTLEA----KEKEIANGRLAMLASLGLIVQHNVPGKGPFDNILQHISDPWHNTIVQTL

AT1G76570.1 Chlorophyll A-B binding family protein2.4e-1448.05Show/hide
Query:  PNDVGYPGG-IFNPLNF--EPTL--EAKEKEIANGRLAMLASLGLIVQHNVPGKGPFDNILQHISDPWHNTIVQTLR
        P D+ YPGG +F+PLN   +P    + K KEI NGRLAM+A LG   Q    GKGP  N++ H+SDP HN ++  L+
Subjt:  PNDVGYPGG-IFNPLNF--EPTL--EAKEKEIANGRLAMLASLGLIVQHNVPGKGPFDNILQHISDPWHNTIVQTLR

AT3G47470.1 light-harvesting chlorophyll-protein complex I subunit A42.1e-3481.58Show/hide
Query:  QQYSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLASLGLIVQHNVPGKGPFDNILQHISDPWHNTIVQT
        +QYSLP  +VGYPGGIFNPLNF PT EAKEKE+ANGRLAMLA LG +VQHNV GKGPF+N+LQH+SDPWHNTIVQT
Subjt:  QQYSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLASLGLIVQHNVPGKGPFDNILQHISDPWHNTIVQT

AT3G54890.1 photosystem I light harvesting complex gene 19.2e-1448.61Show/hide
Query:  PNDVGYPGGIFNPLNF----EPTLEAKEKEIANGRLAMLASLGLIVQHNV-PGKGPFDNILQHISDPWHNTI
        P    YPGG F+PL +    +   E K KEI NGRLA+LA +G  VQ +  PG GP +N+  H++DPWHN I
Subjt:  PNDVGYPGGIFNPLNF----EPTLEAKEKEIANGRLAMLASLGLIVQHNV-PGKGPFDNILQHISDPWHNTI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGATGGGCGATGCTCGGAGTTGCAGCAATACAGCTTGCCACCAAATGATGTTGGATACCCAGGGGGAATTTTCAACCCACTCAACTTTGAACCAACTCTTGAGGC
CAAAGAAAAGGAGATTGCTAATGGAAGACTGGCAATGTTGGCATCCTTGGGACTCATTGTTCAACACAATGTGCCTGGAAAAGGTCCATTTGACAACATCTTGCAGCACA
TTTCAGACCCATGGCACAACACTATAGTTCAAACACTAAGGGGATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTGATGGGCGATGCTCGGAGTTGCAGCAATACAGCTTGCCACCAAATGATGTTGGATACCCAGGGGGAATTTTCAACCCACTCAACTTTGAACCAACTCTTGAGGC
CAAAGAAAAGGAGATTGCTAATGGAAGACTGGCAATGTTGGCATCCTTGGGACTCATTGTTCAACACAATGTGCCTGGAAAAGGTCCATTTGACAACATCTTGCAGCACA
TTTCAGACCCATGGCACAACACTATAGTTCAAACACTAAGGGGATAG
Protein sequenceShow/hide protein sequence
MADGRCSELQQYSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLASLGLIVQHNVPGKGPFDNILQHISDPWHNTIVQTLRG