; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MELO3C002397 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C002397
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
Description28S ribosomal protein S33, mitochondrial
Genome locationchr12:22939866..22943799
RNA-Seq ExpressionMELO3C002397
SyntenyMELO3C002397
Gene Ontology termsGO:0005739 - mitochondrion (cellular component)
GO:0005840 - ribosome (cellular component)
InterPro domainsIPR013219 - Ribosomal protein S27/S33, mitochondrial


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8652638.1 hypothetical protein Csa_013164 [Cucumis sativus]2.7e-5668.42Show/hide
Query:  LPLPSLKLPNPTNFGWGSKQLRMTGFDMDALSRSVKCL--------------------------------------------GKPEERMATNSLKSMIAA
        LP P + L +   F   ++QLRMTGFDMDALSRSVKCL                                            GKPEERMATNSLKSMIAA
Subjt:  LPLPSLKLPNPTNFGWGSKQLRMTGFDMDALSRSVKCL--------------------------------------------GKPEERMATNSLKSMIAA

Query:  AVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK
        AV+KGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKV+QWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK
Subjt:  AVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK

KAG7019771.1 RSM27, partial [Cucurbita argyrosperma subsp. argyrosperma]4.0e-4792.59Show/hide
Query:  GKPEERMATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQG
        GK EERMATNSLK MIAAA++KGVTEARARIFGH+LNPTGQRSTHKLLRKKLIGDKVA+WYPYDIKKDDPL+MAR EQERLSKLEMLKRRGKGPPKKGQG
Subjt:  GKPEERMATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQG

Query:  RRAAKRNK
        RRAAKRNK
Subjt:  RRAAKRNK

XP_004145134.1 28S ribosomal protein S33, mitochondrial isoform X2 [Cucumis sativus]3.4e-4698.04Show/hide
Query:  MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MATNSLKSMIAAAV+KGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKV+QWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

XP_008440305.1 PREDICTED: 28S ribosomal protein S33, mitochondrial [Cucumis melo]6.8e-47100Show/hide
Query:  MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

XP_031745997.1 uncharacterized protein LOC101219254 isoform X1 [Cucumis sativus]5.0e-5098.15Show/hide
Query:  GKPEERMATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQG
        GKPEERMATNSLKSMIAAAV+KGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKV+QWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQG
Subjt:  GKPEERMATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQG

Query:  RRAAKRNK
        RRAAKRNK
Subjt:  RRAAKRNK

TrEMBL top hitse value%identityAlignment
A0A0A0LRA7 Uncharacterized protein1.6e-4698.04Show/hide
Query:  MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MATNSLKSMIAAAV+KGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKV+QWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

A0A1S3B0S3 28S ribosomal protein S33, mitochondrial3.3e-47100Show/hide
Query:  MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

A0A5A7UM66 28S ribosomal protein S333.3e-47100Show/hide
Query:  MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

A0A6J1EDC3 28S ribosomal protein S33, mitochondrial8.9e-4593.14Show/hide
Query:  MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MATNSLK MIAAA++KGVTEARARIFGH+LNPTGQRSTHKLLRKKLIGDKVA+WYPYDIKKDDPL+MAR EQERLSKLEMLKRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

A0A6J1KNI8 28S ribosomal protein S33, mitochondrial4.0e-4594.12Show/hide
Query:  MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MATNSLK MIAAAV+KGVTEARARIFGH+LNPTGQRSTHKLLRKKLIGDKVA+WYPYDIKKDDPL+MAR EQERLSKLEMLKRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

SwissProt top hitse value%identityAlignment
P53305 Mitochondrial 37S ribosomal protein S274.3e-0441.11Show/hide
Query:  VTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPY-DIKK--------DDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAA
        V E  A+IF    NP+G R+  K+L ++L G  VA +Y   DI K         D   +   EQ RLS +E  KRRGKG PKK +   AA
Subjt:  VTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPY-DIKK--------DDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAA

Arabidopsis top hitse value%identityAlignment
AT5G44710.1 CONTAINS InterPro DOMAIN/s: Ribosomal protein S27/S33, mitochondrial (InterPro:IPR013219); Has 101 Blast hits to 101 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 59; Plants - 26; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).7.7e-4179.41Show/hide
Query:  MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MA+ SLKS+I++AV +GVTEARARIFGH+LNPTGQRS HK+LRKKLIGDKVA+WYPYDIK +DP V+AR E+ER+SKLEMLKRR KGPPKKG G+RAAKR
Subjt:  MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAAGACGTAAACCTATACCTCTTTCTTTCCCTTCCTGCTGCATTCTCCCTCTTCCGTCGTTGAAGCTCCCAAATCCGACCAATTTTGGATGGGGTTCTAAG
CAATTGAGAATGACCGGTTTTGATATGGACGCACTCTCAAGGAGTGTGAAGTGTTTGGGAAAGCCAGAAGAGAGAATGGCTACAAATAGCCTGAAGAGTATGATT
GCCGCAGCAGTCAGTAAGGGAGTGACAGAAGCAAGGGCAAGGATATTTGGTCACATACTTAACCCAACAGGTCAACGATCTACCCACAAGCTTCTGCGCAAAAAA
CTCATTGGTGACAAAGTAGCACAGTGGTATCCGTATGACATCAAGAAGGATGATCCTCTTGTCATGGCTCGCCTAGAACAAGAGCGCTTGTCCAAGCTTGAAATG
CTAAAGCGTCGTGGTAAGGGACCACCTAAGAAGGGCCAAGGCAGGCGTGCAGCCAAGCGCAACAAGTTATGGGCCAGTTTTCTCACGATTCCAAATCTTTCAAAA
GCCTCAGGACCTAGAGATCCCATGAGAAAGATGTTTGTCGCAATCGACAAACTTGGCAGCCATGGTACCAATGGCACACCCCAAACTTTCGGCTTTCTTTGCATT
GGCAGAAGCAATGCAATCCCCAAAGTCCCCAGAAACCAAACAGGGACGGTCACAACAAGTGCCACAGCCATCATCGTGAAGACAAAGAGCGTGCTGACGGACAAC
AAGCTCGCTAGAACATCCAAGCTAGAGAAGAAAGCAATGCAGCCACTTGTTATGGCAATCAGAAGTGTAGCATTGATGGACAAGAGCAAACCAAGGGGGAATCAT
GTGAGCTCGAGCAATGTGAGTCGTATACCGAGCTTGCCCGAGCGCCCCAACCAAAAGAACAGTAGTCATCCCCTTCAAAGCACCAAGAGCCACCAAATACTTGGC
CCATTTCATTCCGACCCTCTCAAAAGCAACAGAGTAAGCTGCGTCTGGGCTTATATCAGTATATTTCTGCATCATACTAAGCGACAGTGCCATCAAACAATATAT
CACAGTGATAATCGACATCGATCCCAACAATCCCAAAGAATCACAACTGTATTAATAGCTGAGGCAATCCAATTCAGATATGAAGTTTTCCTCGTGCTTGTCATC
GCTATCGTTGCAGCAATCGCCAATACCCCAACGGCTATAGGGTCGAGAAGATTGTATCCATCTTTGAGATTCGTGTGGATAAGTAAAGATTTGTCGGGTCGGTCC
AGAAGTGAAGTGAAATCCCCCGGCAACTGGGATTTCAATAGCGAACTCTGTATAGCAAAAAACAGAGAGCATCGCAGAAATGCCGGAAGCTACATAAGAAAGAAC
AATGGCTGGTCCAGCATGTTCATTAGCTTCTTGGCCTGTGAGAACAAAAATTCCTGCACCAATTACAGCACCAAATCCAAACCAAGTAAGATCCCACCAAGTAAG
GCAACGTTTCATTTCATTCTCGCTTCGTTTTCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAAAGACGTAAACCTATACCTCTTTCTTTCCCTTCCTGCTGCATTCTCCCTCTTCCGTCGTTGAAGCTCCCAAATCCGACCAATTTTGGATGGGGTTCTAAG
CAATTGAGAATGACCGGTTTTGATATGGACGCACTCTCAAGGAGTGTGAAGTGTTTGGGAAAGCCAGAAGAGAGAATGGCTACAAATAGCCTGAAGAGTATGATT
GCCGCAGCAGTCAGTAAGGGAGTGACAGAAGCAAGGGCAAGGATATTTGGTCACATACTTAACCCAACAGGTCAACGATCTACCCACAAGCTTCTGCGCAAAAAA
CTCATTGGTGACAAAGTAGCACAGTGGTATCCGTATGACATCAAGAAGGATGATCCTCTTGTCATGGCTCGCCTAGAACAAGAGCGCTTGTCCAAGCTTGAAATG
CTAAAGCGTCGTGGTAAGGGACCACCTAAGAAGGGCCAAGGCAGGCGTGCAGCCAAGCGCAACAAGTTATGGGCCAGTTTTCTCACGATTCCAAATCTTTCAAAA
GCCTCAGGACCTAGAGATCCCATGAGAAAGATGTTTGTCGCAATCGACAAACTTGGCAGCCATGGTACCAATGGCACACCCCAAACTTTCGGCTTTCTTTGCATT
GGCAGAAGCAATGCAATCCCCAAAGTCCCCAGAAACCAAACAGGGACGGTCACAACAAGTGCCACAGCCATCATCGTGAAGACAAAGAGCGTGCTGACGGACAAC
AAGCTCGCTAGAACATCCAAGCTAGAGAAGAAAGCAATGCAGCCACTTGTTATGGCAATCAGAAGTGTAGCATTGATGGACAAGAGCAAACCAAGGGGGAATCAT
GTGAGCTCGAGCAATGTGAGTCGTATACCGAGCTTGCCCGAGCGCCCCAACCAAAAGAACAGTAGTCATCCCCTTCAAAGCACCAAGAGCCACCAAATACTTGGC
CCATTTCATTCCGACCCTCTCAAAAGCAACAGAGTAAGCTGCGTCTGGGCTTATATCAGTATATTTCTGCATCATACTAAGCGACAGTGCCATCAAACAATATAT
CACAGTGATAATCGACATCGATCCCAACAATCCCAAAGAATCACAACTGTATTAATAGCTGAGGCAATCCAATTCAGATATGAAGTTTTCCTCGTGCTTGTCATC
GCTATCGTTGCAGCAATCGCCAATACCCCAACGGCTATAGGGTCGAGAAGATTGTATCCATCTTTGAGATTCGTGTGGATAAGTAAAGATTTGTCGGGTCGGTCC
AGAAGTGAAGTGAAATCCCCCGGCAACTGGGATTTCAATAGCGAACTCTGTATAGCAAAAAACAGAGAGCATCGCAGAAATGCCGGAAGCTACATAAGAAAGAAC
AATGGCTGGTCCAGCATGTTCATTAGCTTCTTGGCCTGTGAGAACAAAAATTCCTGCACCAATTACAGCACCAAATCCAAACCAAGTAAGATCCCACCAAGTAAG
GCAACGTTTCATTTCATTCTCGCTTCGTTTTCTTAG
Protein sequenceShow/hide protein sequence
MKRRKPIPLSFPSCCILPLPSLKLPNPTNFGWGSKQLRMTGFDMDALSRSVKCLGKPEERMATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKK
LIGDKVAQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNKLWASFLTIPNLSKASGPRDPMRKMFVAIDKLGSHGTNGTPQTFGFLCI
GRSNAIPKVPRNQTGTVTTSATAIIVKTKSVLTDNKLARTSKLEKKAMQPLVMAIRSVALMDKSKPRGNHVSSSNVSRIPSLPERPNQKNSSHPLQSTKSHQILG
PFHSDPLKSNRVSCVWAYISIFLHHTKRQCHQTIYHSDNRHRSQQSQRITTVLIAEAIQFRYEVFLVLVIAIVAAIANTPTAIGSRRLYPSLRFVWISKDLSGRS
RSEVKSPGNWDFNSELCIAKNREHRRNAGSYIRKNNGWSSMFISFLACENKNSCTNYSTKSKPSKIPPSKATFHFILASFS