; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MELO3C003394 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C003394
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
Descriptionprotein LOL1
Genome locationchr04:785843..788125
RNA-Seq ExpressionMELO3C003394
SyntenyMELO3C003394
Gene Ontology termsGO:0005634 - nucleus (cellular component)
InterPro domainsIPR005735 - Zinc finger, LSD1-type
IPR036280 - Multiheme cytochrome superfamily
IPR040319 - LSD1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038592.1 protein LOL1 [Cucumis melo var. makuwa]1.7e-47100Show/hide
Query:  MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALE
        MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALE
Subjt:  MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALE

XP_004148490.1 protein LOL1 [Cucumis sativus]1.3e-4794.12Show/hide
Query:  MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEGRE
        MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVP PGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALE  +
Subjt:  MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEGRE

Query:  IS
        ++
Subjt:  IS

XP_008465951.1 PREDICTED: protein LOL1 [Cucumis melo]3.5e-4895.1Show/hide
Query:  MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEGRE
        MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALE  +
Subjt:  MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEGRE

Query:  IS
        ++
Subjt:  IS

XP_022952054.1 protein LOL1-like [Cucurbita moschata]8.6e-4792.16Show/hide
Query:  MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEGRE
        MPPVPLAPYPTPPAPY+QP+NATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVP PGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALE  +
Subjt:  MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEGRE

Query:  IS
        ++
Subjt:  IS

XP_038887483.1 protein LOL1 isoform X2 [Benincasa hispida]2.5e-4691.18Show/hide
Query:  MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEGRE
        MPPVPLAPYPTPP PYTQP+NATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVT VP PGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALE  +
Subjt:  MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEGRE

Query:  IS
        ++
Subjt:  IS

TrEMBL top hitse value%identityAlignment
A0A0A0LEE4 Uncharacterized protein6.4e-4894.12Show/hide
Query:  MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEGRE
        MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVP PGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALE  +
Subjt:  MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEGRE

Query:  IS
        ++
Subjt:  IS

A0A1S3CQ35 protein LOL11.7e-4895.1Show/hide
Query:  MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEGRE
        MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALE  +
Subjt:  MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEGRE

Query:  IS
        ++
Subjt:  IS

A0A5A7T554 Protein LOL18.4e-48100Show/hide
Query:  MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALE
        MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALE
Subjt:  MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALE

A0A6J1GKN9 protein LOL1-like4.2e-4792.16Show/hide
Query:  MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEGRE
        MPPVPLAPYPTPPAPY+QP+NATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVP PGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALE  +
Subjt:  MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEGRE

Query:  IS
        ++
Subjt:  IS

A0A6J1I7B6 protein LOL1-like1.0e-4591.26Show/hide
Query:  MPPVPLAPYPTPPA-PYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEGR
        MPPVPLAPYPTPPA PY+QP+NATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVP PGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALE  
Subjt:  MPPVPLAPYPTPPA-PYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEGR

Query:  EIS
        +++
Subjt:  EIS

SwissProt top hitse value%identityAlignment
P94077 Protein LSD15.4e-2061.64Show/hide
Query:  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPGT--EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNL
        Q QLVC GCRNLL+YP GA++V CA+CN +  VP P    +MA ++CGGC T+LMY RGA+SV+CSCC T NL
Subjt:  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPGT--EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNL

Q0J7V9 Protein LSD12.1e-4384Show/hide
Query:  PVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEGREIS
        PVPLAPYPTPP P+T P N  QSQLVCSGCRNLL+YP GATSVCCAVC+ VTAVPAPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLA+E  +++
Subjt:  PVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEGREIS

Q2QMB3 Protein LOL22.4e-2370.83Show/hide
Query:  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTA-VPAPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNL
        QSQ+VC GCRN+LLYP GA SVCCAVC+AV++  P+PG ++A L+CGGC TLLMY R ATSV+CSCC TVNL
Subjt:  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTA-VPAPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNL

Q6ASS2 Protein LOL32.9e-2167.12Show/hide
Query:  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAV--PAPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNL
        QSQ+VC GCR++L YP GA SVCCA+C A+T V  PAP  EMA L+CGGC TLLMY R A +V+CSCC TVNL
Subjt:  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAV--PAPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNL

Q93ZB1 Protein LOL11.0e-4280.73Show/hide
Query:  PVPLAPYPTPPAPYTQPSNAT---------QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVN
        PVPLAPYPTPPAP   PS  T         QSQLVCSGCRNLL+YPVGATSVCCAVCNAVTAVP PGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVN
Subjt:  PVPLAPYPTPPAPYTQPSNAT---------QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVN

Query:  LALEGREIS
        LALE  +++
Subjt:  LALEGREIS

Arabidopsis top hitse value%identityAlignment
AT1G32540.1 lsd one like 11.6e-3887.95Show/hide
Query:  SNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEGREIS
        S + QSQLVCSGCRNLL+YPVGATSVCCAVCNAVTAVP PGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALE  +++
Subjt:  SNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEGREIS

AT1G32540.2 lsd one like 17.2e-4480.73Show/hide
Query:  PVPLAPYPTPPAPYTQPSNAT---------QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVN
        PVPLAPYPTPPAP   PS  T         QSQLVCSGCRNLL+YPVGATSVCCAVCNAVTAVP PGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVN
Subjt:  PVPLAPYPTPPAPYTQPSNAT---------QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVN

Query:  LALEGREIS
        LALE  +++
Subjt:  LALEGREIS

AT1G32540.3 lsd one like 17.2e-4480.73Show/hide
Query:  PVPLAPYPTPPAPYTQPSNAT---------QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVN
        PVPLAPYPTPPAP   PS  T         QSQLVCSGCRNLL+YPVGATSVCCAVCNAVTAVP PGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVN
Subjt:  PVPLAPYPTPPAPYTQPSNAT---------QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVN

Query:  LALEGREIS
        LALE  +++
Subjt:  LALEGREIS

AT4G20380.2 LSD1 zinc finger family protein3.9e-2161.64Show/hide
Query:  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPGT--EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNL
        Q QLVC GCRNLL+YP GA++V CA+CN +  VP P    +MA ++CGGC T+LMY RGA+SV+CSCC T NL
Subjt:  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPGT--EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNL

AT4G20380.8 LSD1 zinc finger family protein7.8e-2250Show/hide
Query:  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPGT--EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEGREISVTFRNSNQNYVRHLEQILV
        Q QLVC GCRNLL+YP GA++V CA+CN +  VP P    +MA ++CGGC T+LMY RGA+SV+CSCC T NL  E      +F     N ++ L+  L+
Subjt:  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPGT--EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEGREISVTFRNSNQNYVRHLEQILV

Query:  DCVGCL
        D  G L
Subjt:  DCVGCL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCACCAGTTCCTCTTGCTCCATATCCAACCCCTCCAGCTCCTTATACACAACCTTCTAATGCCACACAAAGCCAACTTGTGTGCTCAGGATGCAGAAACCTT
TTACTTTATCCTGTTGGGGCAACCTCTGTTTGCTGTGCTGTTTGTAATGCAGTCACTGCCGTACCGGCCCCCGGCACAGAAATGGCACAATTGGTGTGTGGAGGC
TGCCATACTCTTCTCATGTACATCCGTGGTGCCACGAGCGTCCAATGTTCTTGTTGCCACACTGTCAACTTAGCTTTGGAAGGTAGGGAAATCTCAGTAACTTTC
AGAAACTCAAATCAAAATTACGTTAGACATCTCGAACAAATCTTGGTAGATTGCGTAGGCTGTTTAGAATAA
mRNA sequenceShow/hide mRNA sequence
AACAAACAACTATTTGATACTTATCCTTTTGCTTTTACGTTTCTTACTTTGTTTACTTTATCAAATCTAAAATTTTTACATCCCTTTCCTCTATCTCCCCTTCCT
TTCTTCTATCTGCTCCTCCAACTTGCAAACGTATGAATTTCCCCTCACTTCAACTCATTGGCTTTTCAATCTTTCTTCCCCCAGCTTCTTCCTTGCTGGGTTTCT
CCATTTTTTTGGTTCATCTCCCTAAACTTGTTTCCATGGAGGGAAGTAGCTGGTTTTGTCTGAGCTTTTGAGAGCTTGGTTTGAAGATAGAGATAAAGAGAGAAA
AGTTAGGAAAGATTTTACTTTATCAAAGCTGCAAAATGCCACCAGTTCCTCTTGCTCCATATCCAACCCCTCCAGCTCCTTATACACAACCTTCTAATGCCACAC
AAAGCCAACTTGTGTGCTCAGGATGCAGAAACCTTTTACTTTATCCTGTTGGGGCAACCTCTGTTTGCTGTGCTGTTTGTAATGCAGTCACTGCCGTACCGGCCC
CCGGCACAGAAATGGCACAATTGGTGTGTGGAGGCTGCCATACTCTTCTCATGTACATCCGTGGTGCCACGAGCGTCCAATGTTCTTGTTGCCACACTGTCAACT
TAGCTTTGGAAGGTAGGGAAATCTCAGTAACTTTCAGAAACTCAAATCAAAATTACGTTAGACATCTCGAACAAATCTTGGTAGATTGCGTAGGCTGTTTAGAAT
AATTCATTCCTATCTAACTCCCATCATGAATAGCAACATTATGTTACAGATTGAGTTCACTAAAGGCATATCGTTAGAAAATAGTTAAGAGCTACAAAACTTTGT
TTTGTAAGGAAAAACTCATGTGAACCGAGCGATAAATCCATATTGTTTCAGCCAATCAGGTGGCGCACGTTAGCTGTGGGAACTGTAGGATGCTACTGATGTATC
AATATGGAGCACGGTCAGTGAAATGTGCAGTATGCAATTTTGTAACATCAGTTGGGATGTCAACAAGTGCAATCGATCAAAAAGCATAATAGCTAAAGTTATCGT
AAACAAGGTTGTCCAAAATTCGACAACTGCGGCTTCGCCCATTATTCGTAATGCCCTCGAGGGTGTTTGTCTCGACTTGACAAACGGAGGTTCCTCTTCTTATTC
ACTTGTATAGAGCTGTATTTCTGCGCGTGAACTTTAAATGTTGCTATTTTTTTCATCTTCACAGTGGTTGAATGTATGCTTTAAGTAGTTTTGAGAAAATATATA
TGAATATGGTAGAGAGACAAGTTTTTATACTGTCTTGAGTGTAATATAACTGTTGGTAAAGATGGATTTTGGTTTGTTTGTTTGT
Protein sequenceShow/hide protein sequence
MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEGREISVTF
RNSNQNYVRHLEQILVDCVGCLE