CuGenDBv2

Gene ID	MELO3C003771
Organism	Cucumis melo DHL92 (Melon (DHL92) v4)
Description	Mitochondrial
Genome location	chr04:3898490..3904345
RNA-Seq Expression	MELO3C003771
Synteny	MELO3C003771
Gene Ontology terms	GO:0005762 - mitochondrial large ribosomal subunit (cellular component) GO:0004386 - helicase activity (molecular function)
InterPro domains	IPR019716 - Ribosomal protein L53, mitochondrial

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0063266.1 Mitochondrial [Cucumis melo var. makuwa]

3.2e-59

100

Show/hide

Query:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKSKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSISAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKSKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSISAQTIRNMILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKSKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSISAQTIRNMILEKGQLLETEQMFREAGE

Query:  AWPVIIPEEELKQPLTSIKV
        AWPVIIPEEELKQPLTSIKV
Subjt:  AWPVIIPEEELKQPLTSIKV

KAG7024167.1 hypothetical protein SDJN02_12980, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.2e-53

66.49

Show/hide

Query:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKSKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSISAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKV+IEFNALDPRLA CMEFLAQCNA K+KESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATS  +QTIRNMILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKSKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSISAQTIRNMILEKGQLLETEQMFREAGE

Query:  AWPVIIPEEELKQPLTSIKVGLIVKELQSMQMAKGQRGLVRVILEKRKT---------IEDRLERGVASSFITLGCQQQNQFPWISKS
         WPVIIP+EEL QP  SIKV L+               L+ + LEK+KT         I +R ERG         C   +Q PW +K+
Subjt:  AWPVIIPEEELKQPLTSIKVGLIVKELQSMQMAKGQRGLVRVILEKRKT---------IEDRLERGVASSFITLGCQQQNQFPWISKS

XP_004147839.1 uncharacterized protein LOC101217531 [Cucumis sativus]

6.2e-55

93.28

Show/hide

Query:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKSKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSISAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRLACCMEFLAQCNA+K+KESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATS  AQTIR+MILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKSKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSISAQTIRNMILEKGQLLETEQMFREAGE

Query:  AWPVIIPEEELKQPLTSIK
        AWPVIIP+EELKQP T IK
Subjt:  AWPVIIPEEELKQPLTSIK

XP_008466507.1 PREDICTED: uncharacterized protein LOC103503897 [Cucumis melo]

9.2e-59

100

Show/hide

Query:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKSKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSISAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKSKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSISAQTIRNMILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKSKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSISAQTIRNMILEKGQLLETEQMFREAGE

Query:  AWPVIIPEEELKQPLTSIK
        AWPVIIPEEELKQPLTSIK
Subjt:  AWPVIIPEEELKQPLTSIK

XP_038896893.1 uncharacterized protein LOC120085105 [Benincasa hispida]

1.2e-53

92.44

Show/hide

Query:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKSKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSISAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRLA CMEFLAQCNA K+KESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATS  AQTIRNMILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKSKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSISAQTIRNMILEKGQLLETEQMFREAGE

Query:  AWPVIIPEEELKQPLTSIK
         WPVIIP+EELKQPL+ IK
Subjt:  AWPVIIPEEELKQPLTSIK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LGG5 Uncharacterized protein

3.0e-55

93.28

Show/hide

Query:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKSKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSISAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRLACCMEFLAQCNA+K+KESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATS  AQTIR+MILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKSKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSISAQTIRNMILEKGQLLETEQMFREAGE

Query:  AWPVIIPEEELKQPLTSIK
        AWPVIIP+EELKQP T IK
Subjt:  AWPVIIPEEELKQPLTSIK

A0A1S3CRE8 uncharacterized protein LOC103503897

4.5e-59

100

Show/hide

Query:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKSKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSISAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKSKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSISAQTIRNMILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKSKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSISAQTIRNMILEKGQLLETEQMFREAGE

Query:  AWPVIIPEEELKQPLTSIK
        AWPVIIPEEELKQPLTSIK
Subjt:  AWPVIIPEEELKQPLTSIK

A0A5D3E6Q7 Mitochondrial

1.5e-59

100

Show/hide

Query:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKSKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSISAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKSKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSISAQTIRNMILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKSKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSISAQTIRNMILEKGQLLETEQMFREAGE

Query:  AWPVIIPEEELKQPLTSIKV
        AWPVIIPEEELKQPLTSIKV
Subjt:  AWPVIIPEEELKQPLTSIKV

A0A6J1CC86 uncharacterized protein LOC111010210

1.8e-52

89.92

Show/hide

Query:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKSKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSISAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRLA CMEFLAQCNA K+KESNPACQLIVKRRTDD PPQIAVTFVNGVEEVFDATS  AQTIRNMILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKSKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSISAQTIRNMILEKGQLLETEQMFREAGE

Query:  AWPVIIPEEELKQPLTSIK
         WP++IPEEEL+QP  SIK
Subjt:  AWPVIIPEEELKQPLTSIK

A0A6J1IHE6 uncharacterized protein LOC111473560 isoform X3

2.4e-52

88.52

Show/hide

Query:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKSKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSISAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRL  CMEFLAQCNA K+KESNPACQLIVKRRTDDHPPQI VTFVNGVEEVFDATS  AQTIRNMILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKSKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSISAQTIRNMILEKGQLLETEQMFREAGE

Query:  AWPVIIPEEELKQPLTSIKVGL
         WPVIIP+EEL QP  SIK+ L
Subjt:  AWPVIIPEEELKQPLTSIKVGL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G39600.1 CONTAINS InterPro DOMAIN/s: Ribosomal protein L53, mitochondrial (InterPro:IPR019716); Has 50 Blast hits to 50 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

1.3e-47

76.47

Show/hide

Query:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKSKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSISAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKV+IEFN LDPRLA C+EFLAQCNA K+KESNP CQ++VKRRTD+ PPQI VTFVNGVEE FDA + SAQ+IR MIL+KGQ LETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKSKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSISAQTIRNMILEKGQLLETEQMFREAGE

Query:  AWPVIIPEEELKQPLTSIK
         WPVIIP+EEL Q    +K
Subjt:  AWPVIIPEEELKQPLTSIK

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTTGAAGTTCCTATCTAAAGTGAAGATCGAATTCAATGCTCTCGATCCACGTTTAGCGTGTTGTATGGAATTCTTGGCGCAGTGTAATGCTACCAAGTCGAAG
GAATCCAACCCCGCTTGCCAGTTGATCGTCAAGCGCCGAACAGACGACCATCCTCCCCAGATCGCCGTCACCTTCGTCAATGGAGTCGAAGAGGTTTTTGACGCT
ACCTCTATTTCTGCTCAAACAATCAGGAATATGATTCTTGAAAAGGGTCAGCTCCTTGAGACCGAGCAAATGTTCCGAGAAGCTGGGGAAGCTTGGCCCGTTATC
ATTCCCGAGGAGGAGCTCAAACAACCCCTTACCAGTATCAAGGTTGGTCTGATAGTCAAAGAGCTACAATCTATGCAAATGGCAAAGGGGCAGAGAGGATTGGTT
CGAGTTATCCTAGAAAAGCGGAAGACAATTGAGGATAGATTGGAAAGAGGCGTGGCATCTAGTTTCATAACCTTAGGCTGTCAACAACAGAATCAGTTTCCATGG
ATTAGCAAGAGCGCTGATCCTCAGATGTTTTCCGTTTTAAATTTCATAGGGATGCCTCCAAGTCTTGTCTTCTTAGAATTCCGCGTTGGGCTCTAA

mRNA sequence

Show/hide mRNA sequence

GCTGAAGACAATTTTTCATTCCCTTTTTAAAAAATTGGCCAAATTTTGCACACAGGGAAAAAAAACCCCAAACCCCACCCAATAACCTAGGCTTAGTCGTCGTCC
TCCTTCTCGCACCCCCAATCATTGTTGTTCGAAGGTTCAGGCGAAGGGAATAAGCAGCGATGTTGAAGTTCCTATCTAAAGTGAAGATCGAATTCAATGCTCTCG
ATCCACGTTTAGCGTGTTGTATGGAATTCTTGGCGCAGTGTAATGCTACCAAGTCGAAGGAATCCAACCCCGCTTGCCAGTTGATCGTCAAGCGCCGAACAGACG
ACCATCCTCCCCAGATCGCCGTCACCTTCGTCAATGGAGTCGAAGAGGTTTTTGACGCTACCTCTATTTCTGCTCAAACAATCAGGAATATGATTCTTGAAAAGG
GTCAGCTCCTTGAGACCGAGCAAATGTTCCGAGAAGCTGGGGAAGCTTGGCCCGTTATCATTCCCGAGGAGGAGCTCAAACAACCCCTTACCAGTATCAAGGTTG
GTCTGATAGTCAAAGAGCTACAATCTATGCAAATGGCAAAGGGGCAGAGAGGATTGGTTCGAGTTATCCTAGAAAAGCGGAAGACAATTGAGGATAGATTGGAAA
GAGGCGTGGCATCTAGTTTCATAACCTTAGGCTGTCAACAACAGAATCAGTTTCCATGGATTAGCAAGAGCGCTGATCCTCAGATGTTTTCCGTTTTAAATTTCA
TAGGGATGCCTCCAAGTCTTGTCTTCTTAGAATTCCGCGTTGGGCTCTAAATACATGTGGATGCTGTTGGTTTTCATAAGCAATTTATCTGTGGGAACTCGTTAC
CAATACATGCTTTATAAGAAATTTCAAATTGGAACTGCTAGGATTTGCGTTGACGTCGCAGCTGACACAAACAATGCCCAGTCTCAACTTTCTTACGATTTTTTA
GTGAAGAAATGTGCAACTAATCTTTCAACTACTGGATTAAATGTTTGTTTGGCTTATTTCATCAATGTCATGACACTTAAAAAAAGTCAAACAGAATCCTGAGTA
ATTTTAACAAATTGATTAGACTACAGAACACCGTTCTCAAAGTCACCATAATCATCTTCTATATATTATTGTGTAATTGTGAACATGGCAATGGACACGAGCCAG
GTGACCATACTGCTATTTCAGAGCAAAAAGCATATACCCTTGAGAAAATACACAAACGTTACACAATACGTATGTATACTACTAACAAATGTACACAGCATCGTC
CATTTGTAATGAACAAAACATCTCTTCTCTTTCTAACGGTCTTCTCGTCTTACAGCATTTGGGTCGGACATCATGTCTAGCATCATCTTCTCCGGTGAATCTTCC
CAACTAGCAAATGTTTTCAAATCAACCTGCAAAAATTTCCAGGGACAATGGATTGTAAACCTAATATTCAGACCCTTAAAAGAAATAGAGTATTAATCATGCTCT
TTTACCTTTCTTCTTTGTTCAGTGAAAAGCTCCTCTCTCTTTTTGTACGAGTTTTGGATTTCCTTAGCCGTAGAGCCGCCAAGTCCCCAAACTTCCACATCTAGA
ATGGAAGCTTCAACAGGCAGGAACCCCTGGAATTCATTTACATAATATGTTGAAAATTGATGAGTAGCATGCTCCTCAAAGGAATGGGAATCAACTCGATGTATT
CTCATCTCACACTATGTATTCATATATTTTTCCTACCTGATCTGGGAAGAGAGGACCAGGCTGATAAGTTTTGTCAACCACGTGATGACGAACAGTAACCCTGGC
AAAATCTTCATCGATGAATATTCTCTCATTTCCCACACTTCCCCCAAATCCAAGTCCAACCGGCTTTGGATGCGGTTCATAAACCCTTGCAGATGGATGTAAGTG
GCTATAGACAAAGTTCTTTTCCTTCCCTGTAAATAATCATTTGAAGTAAGTTCACGAGACATAAATGCTCGTTAAGCAAGAGAACCTAGAAGAACCTCAACCACA
TTGTCCTACCGGTCGCTGAATACACATGAAAAACTGGCCTAAGAGCATAGATATTTCCTCCGCTTCCATAGAACAGATCTCTATTTTCAAAACCCTGGAATGTCA
GTACACCAACAGTCCATTTCAATTCATTGGTGGAATCATCATGAGTGTCTCCAGATGCAGCATGAACAACCACAAACAAAGGACCTTGGTAACCTTCGATATTGG
ACCAGAATCTATTCAAGCCTCTCCCATGAACTGACGACCTACAATATATCAAAGTGTGTAAATACATCAATAAATAACATCATGCACATGTGACATGCATGCTGA
AACCCCCAATGGGTAAAGAATGTCTCGACAAGCATTAATATAAGGACAATCTGTGGAAAACTCGGACAGAAACCTATAAAGGAAACTGCCCATGCTGTTCCACGG
GTCAGAACAAAAGAATACGATGTCTCAGGTGAGGCAATATCTACAGTTGGTGAACTTGAAGACTCTACTCCATCCTGCCATTGAACAACCAGAAAAGGGAACGTC
ACTATTGTCTTCAATAATAATAATAGTAATAAAAAAATAAATCAAAGACATAAGGCTTAATAGTATCCTTTCTCAAAAATATCGGAGAAGTATATACATATAAAC
ATTCTACAACTCTAAATGAAACGTTAACCTAAATTCATATGCTGATAAGTAATAACATGTAACCTAAGAACAATCATTGCATCCAACTTTAAGGACCTATGCATA
AAATATGATCGAAGAATGACGTTTAACTTCGTCTAACTTGAAAATACTGAAGGCAGGTCTTTAGAATAGGGAAGAATAACACCAAAGTTCATTCAAGAAAGACTA
GACCTAGATTGTAAACCCAACTACGTCCTAATATCTTTGACTCATGAAACTATCATAACCAACTGGATCTCACGTCATCAAAACAAGAATACTGTAATAACGCTT
CCAATCAGCCAGGAACTACATTCTACAACAAGAACTCATATAAAATATAAATATTCAATAAATATAAATGCAATAAATAAAATCGGAGGATAAACATATTTTTAT
CTAAAGAAAGAGGAACCAATTACCTGTTGAGTAGAAGCTTGAAGAATTCTTGCATGGACAAACCGTGAGAACCCATCTGGAAGACTCGGAACAGTTTTCACTGCC
CAAGTAAGAAACTTTCCTATGGGTACTTCAACAGCCAACCCTAAGATATCGCAATCCCAAATGTTTACAGTACTACCAACCTCAGCACAAGATGCAACCGACGAC
AGCACCAGATTATTGATATCTGGCAAAAATAAATTTGAATTTGAACTTAAAGCTTTGGAAGTACTAGAATCCCAAAACATAGCCCAACACATCCAAAGAAGCATA
AGAACATCACTCGGAAGAAGGAAGCCACTCATCTTAAATTCATCCTCATAGGATGTAAACTCCAATTTTGAAGGAAGTCCCAGTTTTACCATTGTAGCATCAAAT
ACCCTAATTAATGTATTAAGCAACACAGATGCAGAAATTTTTCCACAACATTTGTTGTAGCCCTTAAGAAATTCAACCCAGGTAACTCCTCCTTTCTCAGGAATG
AAGAACATTTCAACAATTGTTAAACCCACGTGATCTAGGATGCCTGGAAAGGATTCGGGCACAGCAGATGTTTCTTGAGTTCGGTTTTCATAACCTAAAAAGAAG
CATTTCTGAAACCAAACTACATGTTAATAAAATTGCATACATGAAGAATGAACAAATAAACGAAAATCAGATCTCAATGTGGCCCATTCAACTAACCGTATTCAT
GTTCTTCAAGTTCAAAAATCTAGGGAAGGTTTGGCCGTGTTTTTGAAAACCATTTTATAGTTTGTAGCAGAACTCAGTGAAAAAAAACATGCATAGGTGACCATT
CTTTCAAAGTTCTTTATGTTGTTTTTTTCATAAATTATCATGAATGTTATCTCTTTTTCAGAATAATTAAATTTGTCTCCCAATTATGAACAATGATCTCAAACC
TACAAAGCAATAGATTCGCACATACAAAAGTCAGCCAATGTAGCTCTTAAACATAGTTTAGAAAATTGCCTGTAAGGATTCGAAAGGGATTGCATTTGTTTGAGG
ATCCACCAGCTTAGAGAATGCACTCTGAAGCTGAGGAAGAGCTCCCGTTGAAGCTGCCAAGGCTTCAGCCTCTTTTTGGTCATCAGGAACCTTTTTCTCCGTTGA
TGTTGATGCTCCCATTGTCACTCGACAATATTAGAAATGAAACAAGTATATATCCAGTTATTGCCTATTTTTGCACATTATATACCTGACATAGAAAGAGACAAC
AATGTACCTGCTTATTTTTCTGTATGATTTTCAAGAATTGAATCATCAAACTATTTTGATGAATGATTGTAAA

Protein sequence

Show/hide protein sequence

MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKSKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSISAQTIRNMILEKGQLLETEQMFREAGEAWPVI
IPEEELKQPLTSIKVGLIVKELQSMQMAKGQRGLVRVILEKRKTIEDRLERGVASSFITLGCQQQNQFPWISKSADPQMFSVLNFIGMPPSLVFLEFRVGL

MELO3C003771 (gene) of Melon (DHL92) v4 genome