; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MELO3C004534 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C004534
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionRRM domain-containing protein
Genome locationchr05:28068412..28071949
RNA-Seq ExpressionMELO3C004534
SyntenyMELO3C004534
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0016607 - nuclear speck (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK10694.1 zinc finger CCCH domain-containing protein 25 [Cucumis melo var. makuwa]9.9e-18194.25Show/hide
Query:  MTVDDDSSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE
        MTVDDDSSIYVGGLPYDATED+LRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE
Subjt:  MTVDDDSSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE

Query:  RDVNWERDRDRGRDYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDLKLNHDQDWEKDHGADLSGGG
        RDVNWERDRDRGRDYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDLKLNHDQDWEKDHGADLSGGG
Subjt:  RDVNWERDRDRGRDYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDLKLNHDQDWEKDHGADLSGGG

Query:  GIDKTDDYDKSLDNDRDQVLRRDNSLTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEAGERGSFRNSRESFQKNFNVSQIEERSGEKEKLVV
        GIDKTDDYDKSLDNDRDQVLRRDN LTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKE                   VSQIEERSGEKEKLVV
Subjt:  GIDKTDDYDKSLDNDRDQVLRRDNSLTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEAGERGSFRNSRESFQKNFNVSQIEERSGEKEKLVV

Query:  ELQKKAKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
        ELQKKAKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
Subjt:  ELQKKAKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG

XP_004139331.2 U1 small nuclear ribonucleoprotein 70 kDa [Cucumis sativus]3.6e-17589.45Show/hide
Query:  MTVDDDSSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE
        MTVDDDSSIYVGGLPYDATED+LRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE
Subjt:  MTVDDDSSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE

Query:  RDVNWERDRDRGRDYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDLKLNHDQDWEKDHGADLSGGG
        RDV+WERDRDRGRDYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLP+DQFLDR+PELEKTSKDNEK+HDLKLNHDQDWEKDHGADLSGG 
Subjt:  RDVNWERDRDRGRDYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDLKLNHDQDWEKDHGADLSGGG

Query:  GIDKTDDY--------------DKSLDNDRDQVLRRDNSLTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEAGERGSFRNSRESFQKNFNVS
        GIDKTDDY              DKSLDNDRDQVLRRDN LTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKE                   VS
Subjt:  GIDKTDDY--------------DKSLDNDRDQVLRRDNSLTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEAGERGSFRNSRESFQKNFNVS

Query:  QIEERSGEKEKLVVELQKKAKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
        QIEERSGEKEKLVVELQKKAKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
Subjt:  QIEERSGEKEKLVVELQKKAKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG

XP_008457973.1 PREDICTED: zinc finger CCCH domain-containing protein 25 [Cucumis melo]1.2e-18194.79Show/hide
Query:  MTVDDDSSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE
        MTVDDDSSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE
Subjt:  MTVDDDSSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE

Query:  RDVNWERDRDRGRDYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDLKLNHDQDWEKDHGADLSGGG
        RDVNWERDRDRGRDYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDLKLNHDQDWEKDHGADLSGGG
Subjt:  RDVNWERDRDRGRDYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDLKLNHDQDWEKDHGADLSGGG

Query:  GIDKTDDYDKSLDNDRDQVLRRDNSLTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEAGERGSFRNSRESFQKNFNVSQIEERSGEKEKLVV
        GIDKTDDYDKSLDNDRDQVLRRDNSLTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKE                   VSQIEERSGEKEKLVV
Subjt:  GIDKTDDYDKSLDNDRDQVLRRDNSLTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEAGERGSFRNSRESFQKNFNVSQIEERSGEKEKLVV

Query:  ELQKKAKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
        ELQKKAKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
Subjt:  ELQKKAKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG

XP_023547216.1 U1 small nuclear ribonucleoprotein 70 kDa [Cucurbita pepo subsp. pepo]2.5e-15583.01Show/hide
Query:  MTVDDDSSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE
        MTVDDDSSIYVGGLPYDATED+LRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGV +R GGRFG+E NRFD E
Subjt:  MTVDDDSSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE

Query:  RDVNWERDRDRGRDYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDLKLNHDQDWEKDHGADLSGGG
        RDVNWERDRDRGRDY+HDRYR RGRNNDWSR+ DRSREHDLDKER Y+HSQDRDLPKD  LDR+PELEK  K NE+  DLKL+H QDWEKDH AD +GGG
Subjt:  RDVNWERDRDRGRDYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDLKLNHDQDWEKDHGADLSGGG

Query:  GIDKTDDYDKSLDNDRDQVLRRDNSLTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEAGERGSFRNSRESFQKNFNVSQIEERSGEKEKLVV
        GID TDDYDKSL +DRDQ+ RRDN L IEGRTAR+LSSDSSDDYIHELKEQLEISTER EELRKE                   +SQIEER+GEK KLVV
Subjt:  GIDKTDDYDKSLDNDRDQVLRRDNSLTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEAGERGSFRNSRESFQKNFNVSQIEERSGEKEKLVV

Query:  ELQKKAKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
        ELQKKAKKLEDALISAKKRSSFRQ QL KLHKSFLLVKDYS+RLK SEQELQALVESTAIESDVG
Subjt:  ELQKKAKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG

XP_038889756.1 serine/threonine-protein kinase prpf4B [Benincasa hispida]4.9e-16486.58Show/hide
Query:  MTVDDDSSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE
        MTVDDDSSIYVGGLPYDATED+LRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGR+IEGRVVRVNGVKSR GGRFG+EGNRFD E
Subjt:  MTVDDDSSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE

Query:  RDVNWERDRDRGRDYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDLKLNHDQDWEKDHGADLSGGG
        RDV+WERDRDRGRDYDHDRYRHRGRNNDWSRD DRSREHDLDKERGY+HSQD D PKD+ LDRDPELEK+SKDNEK+HDLKLNHDQD EK+HGAD  GGG
Subjt:  RDVNWERDRDRGRDYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDLKLNHDQDWEKDHGADLSGGG

Query:  GIDKTDDYDKSLDNDRDQVLRRDNSLTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEAGERGSFRNSRESFQKNFNVSQIEERSGEKEKLVV
        GID  DDY+KSLDNDR+Q+ RRDN LT EGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKE                   VSQIEERSGEKEKLV+
Subjt:  GIDKTDDYDKSLDNDRDQVLRRDNSLTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEAGERGSFRNSRESFQKNFNVSQIEERSGEKEKLVV

Query:  ELQKKAKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
        ELQKKAKKLEDALISAKKRSSFRQ QL KLHKSFLLVKDYS+RLKTSEQELQALVESTAIESDVG
Subjt:  ELQKKAKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG

TrEMBL top hitse value%identityAlignment
A0A0A0LIV9 RRM domain-containing protein1.8e-17589.45Show/hide
Query:  MTVDDDSSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE
        MTVDDDSSIYVGGLPYDATED+LRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE
Subjt:  MTVDDDSSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE

Query:  RDVNWERDRDRGRDYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDLKLNHDQDWEKDHGADLSGGG
        RDV+WERDRDRGRDYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLP+DQFLDR+PELEKTSKDNEK+HDLKLNHDQDWEKDHGADLSGG 
Subjt:  RDVNWERDRDRGRDYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDLKLNHDQDWEKDHGADLSGGG

Query:  GIDKTDDY--------------DKSLDNDRDQVLRRDNSLTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEAGERGSFRNSRESFQKNFNVS
        GIDKTDDY              DKSLDNDRDQVLRRDN LTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKE                   VS
Subjt:  GIDKTDDY--------------DKSLDNDRDQVLRRDNSLTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEAGERGSFRNSRESFQKNFNVS

Query:  QIEERSGEKEKLVVELQKKAKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
        QIEERSGEKEKLVVELQKKAKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
Subjt:  QIEERSGEKEKLVVELQKKAKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG

A0A1S3C6W1 zinc finger CCCH domain-containing protein 255.6e-18294.79Show/hide
Query:  MTVDDDSSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE
        MTVDDDSSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE
Subjt:  MTVDDDSSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE

Query:  RDVNWERDRDRGRDYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDLKLNHDQDWEKDHGADLSGGG
        RDVNWERDRDRGRDYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDLKLNHDQDWEKDHGADLSGGG
Subjt:  RDVNWERDRDRGRDYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDLKLNHDQDWEKDHGADLSGGG

Query:  GIDKTDDYDKSLDNDRDQVLRRDNSLTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEAGERGSFRNSRESFQKNFNVSQIEERSGEKEKLVV
        GIDKTDDYDKSLDNDRDQVLRRDNSLTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKE                   VSQIEERSGEKEKLVV
Subjt:  GIDKTDDYDKSLDNDRDQVLRRDNSLTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEAGERGSFRNSRESFQKNFNVSQIEERSGEKEKLVV

Query:  ELQKKAKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
        ELQKKAKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
Subjt:  ELQKKAKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG

A0A5A7V7D5 Zinc finger CCCH domain-containing protein 255.6e-18294.79Show/hide
Query:  MTVDDDSSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE
        MTVDDDSSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE
Subjt:  MTVDDDSSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE

Query:  RDVNWERDRDRGRDYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDLKLNHDQDWEKDHGADLSGGG
        RDVNWERDRDRGRDYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDLKLNHDQDWEKDHGADLSGGG
Subjt:  RDVNWERDRDRGRDYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDLKLNHDQDWEKDHGADLSGGG

Query:  GIDKTDDYDKSLDNDRDQVLRRDNSLTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEAGERGSFRNSRESFQKNFNVSQIEERSGEKEKLVV
        GIDKTDDYDKSLDNDRDQVLRRDNSLTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKE                   VSQIEERSGEKEKLVV
Subjt:  GIDKTDDYDKSLDNDRDQVLRRDNSLTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEAGERGSFRNSRESFQKNFNVSQIEERSGEKEKLVV

Query:  ELQKKAKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
        ELQKKAKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
Subjt:  ELQKKAKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG

A0A5D3CHM1 Zinc finger CCCH domain-containing protein 254.8e-18194.25Show/hide
Query:  MTVDDDSSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE
        MTVDDDSSIYVGGLPYDATED+LRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE
Subjt:  MTVDDDSSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE

Query:  RDVNWERDRDRGRDYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDLKLNHDQDWEKDHGADLSGGG
        RDVNWERDRDRGRDYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDLKLNHDQDWEKDHGADLSGGG
Subjt:  RDVNWERDRDRGRDYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDLKLNHDQDWEKDHGADLSGGG

Query:  GIDKTDDYDKSLDNDRDQVLRRDNSLTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEAGERGSFRNSRESFQKNFNVSQIEERSGEKEKLVV
        GIDKTDDYDKSLDNDRDQVLRRDN LTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKE                   VSQIEERSGEKEKLVV
Subjt:  GIDKTDDYDKSLDNDRDQVLRRDNSLTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEAGERGSFRNSRESFQKNFNVSQIEERSGEKEKLVV

Query:  ELQKKAKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
        ELQKKAKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
Subjt:  ELQKKAKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG

A0A6J1G3E0 U1 small nuclear ribonucleoprotein 70 kDa2.6e-15583.01Show/hide
Query:  MTVDDDSSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE
        MTVDDDSSIYVGGLPYDATED+LRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGV +R GGRFG+E NRFD E
Subjt:  MTVDDDSSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE

Query:  RDVNWERDRDRGRDYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDLKLNHDQDWEKDHGADLSGGG
        RDVNWERDRDRGRDY+HDRYR RGRNNDWSR+ DRSREHDLDKER Y+HSQDRDLPKD  LDR+PELEK  K NE+  DLKL+H QDWEKDH AD +GGG
Subjt:  RDVNWERDRDRGRDYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDLKLNHDQDWEKDHGADLSGGG

Query:  GIDKTDDYDKSLDNDRDQVLRRDNSLTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEAGERGSFRNSRESFQKNFNVSQIEERSGEKEKLVV
        GID TDDYDKSL +DRDQ+ RRDN L IEGRTAR+LSSDSSDDYIHELKEQLEISTER EELRKE                   +SQIEER+GEK KLVV
Subjt:  GIDKTDDYDKSLDNDRDQVLRRDNSLTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEAGERGSFRNSRESFQKNFNVSQIEERSGEKEKLVV

Query:  ELQKKAKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
        ELQKKAKKLEDALISAKKRSSFRQ QL KLHKSFLLVKDYS+RLK SEQELQALVESTAIESDVG
Subjt:  ELQKKAKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG

SwissProt top hitse value%identityAlignment
O22703 Glycine-rich RNA-binding protein RZ1B2.7e-1135.2Show/hide
Query:  DSSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDRST-RGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGR---------------
        +S I+VGGL +D TE  L   FD YG +   +I+  R T R + +GF+TFT+ R A DAIK M GR +  +V+ VN  + ++GG                
Subjt:  DSSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDRST-RGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGR---------------

Query:  FGKEGNRFDAERDVNWERDRDRGRDYDHDRYR----HRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRD
         G E   F   R  +W RD     D D +R+R     R R  D     DR  + DL++ER  +   DR +  D   DRD
Subjt:  FGKEGNRFDAERDVNWERDRDRGRDYDHDRYR----HRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRD

P60826 Cold-inducible RNA-binding protein5.5e-0933.8Show/hide
Query:  DDSSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDRST-RGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGV-KSRLGGRFGKEGNRFDAERD
        D+  ++VGGL +D  E  L ++F  YG +  V ++ DR T R + +GFVTF N   A DA+  M+G++++GR +RV+   KS      G  G        
Subjt:  DDSSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDRST-RGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGV-KSRLGGRFGKEGNRFDAERD

Query:  VNWERDRDRG-------RDYDHDRYRHRGRNNDWSRDHDRSR
            R R RG       R Y   R+  R      SRD+  SR
Subjt:  VNWERDRDRG-------RDYDHDRYRHRGRNNDWSRDHDRSR

Q18409 Probable splicing factor, arginine/serine-rich 67.7e-1136.02Show/hide
Query:  DSSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEG---RVVRVNGVKSRLGGRFGKEGNR------
        D+ +YVGGLP DAT   L  IFD +G +  V +    + R   + FV + + R A DA++ +DG  I G   RV    G +   GGR G  G R      
Subjt:  DSSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEG---RVVRVNGVKSRLGGRFGKEGNR------

Query:  ---FDAERDVNWERDRDRGRDYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRD
           +  +R  +  R RDRGRD   DR R R R+    R  +RSRE +  + R  +  Q+RD
Subjt:  ---FDAERDVNWERDRDRGRDYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRD

Q28IQ9 Cold-inducible RNA-binding protein3.2e-0936.08Show/hide
Query:  DDSSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDR-STRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVN----GVKSRLGG-RFGKEGNR--
        D+  ++VGGL ++ TE++L ++F  YG V  V ++ DR S R + +GFVTF NP  A DA+  M+G++++GR +RV+        R GG R G  G R  
Subjt:  DDSSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDR-STRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVN----GVKSRLGG-RFGKEGNR--

Query:  FDAERDVNWERDRDRGRDYDHDRYRHRGRNNDWSRD-HDRSREHDLDKERG-YKHSQD
        F   R      DR  G     +  R  G  +  SRD + RS     D+  G Y+ S D
Subjt:  FDAERDVNWERDRDRGRDYDHDRYRHRGRNNDWSRD-HDRSREHDLDKERG-YKHSQD

Q9FNR1 Glycine-rich RNA-binding protein 3, mitochondrial4.4e-1446.67Show/hide
Query:  SSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDRST-RGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRL-GGRFGKEG
        S +++GG+ Y   ED+LR  F  YG VV  ++I DR T R + +GFVTFT+  +A  AI+ +DGR + GRVV+VN    R  GG FG  G
Subjt:  SSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDRST-RGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRL-GGRFGKEG

Arabidopsis top hitse value%identityAlignment
AT4G39260.1 cold, circadian rhythm, and RNA binding 18.5e-1342.86Show/hide
Query:  YVGGLPYDATEDTLRRIFDLYGAVVAVKIINDR-STRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSR-----LGGRFGKEG
        +VGGL +   ++ L+R F  +G V+  KIINDR S R + +GFVTF + ++  DAI++M+G+ ++GRV+ VN  +SR      GGR G  G
Subjt:  YVGGLPYDATEDTLRRIFDLYGAVVAVKIINDR-STRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSR-----LGGRFGKEG

AT4G39260.2 cold, circadian rhythm, and RNA binding 18.5e-1342.86Show/hide
Query:  YVGGLPYDATEDTLRRIFDLYGAVVAVKIINDR-STRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSR-----LGGRFGKEG
        +VGGL +   ++ L+R F  +G V+  KIINDR S R + +GFVTF + ++  DAI++M+G+ ++GRV+ VN  +SR      GGR G  G
Subjt:  YVGGLPYDATEDTLRRIFDLYGAVVAVKIINDR-STRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSR-----LGGRFGKEG

AT4G39260.3 cold, circadian rhythm, and RNA binding 18.5e-1343.37Show/hide
Query:  YVGGLPYDATEDTLRRIFDLYGAVVAVKIINDR-STRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFG
        +VGGL +   ++ L+R F  +G V+  KIINDR S R + +GFVTF + ++  DAI++M+G+ ++GRV+ VN  +SR  G  G
Subjt:  YVGGLPYDATEDTLRRIFDLYGAVVAVKIINDR-STRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFG

AT5G19960.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.3e-5343.09Show/hide
Query:  MTVDDDSSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE
        MT+DD +S+YVGGLPYD TE+ +RR+F +YG+V+ VKI+NDRS RGKCYGFVTF+N RSA DAI+DMDG++I GR VRVN V +R GGR      R    
Subjt:  MTVDDDSSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE

Query:  RDVNWERDRDRGRD--YDHDRYRHRGRNNDWSRDHDRSREHD-LDKERGYKHSQDRDLPKD-QFLDRDPELEKTSKDNEKLHDLKLNHDQDWEKDHGADL
            W+R  DR  D  Y+ DRY  R R  D  R  DR ++H  ++KER Y+HS D +   D   +DR+   E+    +E           DW  D  + +
Subjt:  RDVNWERDRDRGRD--YDHDRYRHRGRNNDWSRDHDRSREHD-LDKERGYKHSQDRDLPKD-QFLDRDPELEKTSKDNEKLHDLKLNHDQDWEKDHGADL

Query:  SGGGGIDKTDDYDKSLDNDRDQVLRRDNSLTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEAGERGSFRNSRESFQKNFNVSQIEERSGEKE
          G GI+ T     S    R Q  +R++S  ++G   RD  S+SS D  H++KE LE   +  E LR E                   V  +EER   KE
Subjt:  SGGGGIDKTDDYDKSLDNDRDQVLRRDNSLTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEAGERGSFRNSRESFQKNFNVSQIEERSGEKE

Query:  KLVVELQKKAKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
         +  ELQKK+K+LED LI+ KK  S R+ +L KLHKS+  V++ +  LK  EQELQ LV S A E   G
Subjt:  KLVVELQKKAKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG

AT5G61030.1 glycine-rich RNA-binding protein 33.1e-1546.67Show/hide
Query:  SSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDRST-RGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRL-GGRFGKEG
        S +++GG+ Y   ED+LR  F  YG VV  ++I DR T R + +GFVTFT+  +A  AI+ +DGR + GRVV+VN    R  GG FG  G
Subjt:  SSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDRST-RGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRL-GGRFGKEG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGGTGGACGACGATAGCTCGATATACGTCGGCGGTCTTCCTTACGATGCAACGGAGGATACCTTGCGCAGAATCTTCGATTTGTACGGCGCCGTCGTCGCT
GTTAAGATTATCAATGATCGTTCTACTAGGGGAAAGTGCTATGGCTTTGTTACCTTTACAAACCCTCGATCTGCTATTGATGCCATAAAAGACATGGATGGAAGG
ACTATTGAAGGACGGGTTGTCAGAGTTAATGGAGTGAAGAGTAGACTTGGTGGAAGGTTTGGTAAAGAAGGTAATCGGTTCGATGCAGAGAGGGACGTGAACTGG
GAGAGGGATAGAGATCGAGGGAGGGATTATGATCATGATAGGTATCGTCATAGAGGTAGAAACAATGACTGGTCTAGAGATCATGATCGGTCTCGAGAACATGAT
TTGGACAAGGAAAGAGGATATAAGCATTCACAAGATCGTGATCTACCAAAGGATCAATTTTTGGATAGGGATCCAGAGTTGGAAAAAACTTCAAAGGATAATGAG
AAGTTACATGACTTGAAGTTGAACCACGATCAAGATTGGGAAAAAGATCATGGTGCAGATTTGAGTGGAGGCGGAGGCATTGATAAAACTGATGATTATGATAAA
AGCCTTGACAATGACAGAGATCAAGTCTTAAGGAGAGATAACAGTCTTACAATTGAAGGTCGAACTGCTCGGGATCTTTCATCTGATTCTAGTGATGATTATATC
CATGAATTAAAGGAACAACTGGAGATATCAACAGAAAGATTGGAAGAACTCAGAAAAGAGGCAGGAGAGAGAGGCTCGTTTAGAAATAGTCGGGAAAGTTTCCAG
AAAAATTTCAATGTTTCTCAAATAGAGGAGAGGTCAGGAGAGAAAGAAAAACTTGTGGTTGAGTTGCAAAAGAAAGCCAAGAAACTGGAAGATGCATTGATCAGT
GCAAAGAAGCGCTCTTCATTCCGTCAGACACAGCTGATCAAGCTCCATAAAAGCTTTCTGCTAGTAAAGGATTATTCTAAGAGACTTAAAACCAGCGAACAAGAA
CTTCAGGCTCTAGTTGAATCAACTGCAATAGAGAGTGATGTTGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGCAATACGGTATGTCGTTAGGTTTGCGTCTCACTTCCGACATGTCGATTAACGGTTCATAGGCGAGTTCTTAACATTGGGGAAGGGAGTTCGGTGGTGTTTCT
CGACTTTCTTCCTTCTTCTCGGACATTGGATTTTCACGGTGGTCATGACGGTGGACGACGATAGCTCGATATACGTCGGCGGTCTTCCTTACGATGCAACGGAGG
ATACCTTGCGCAGAATCTTCGATTTGTACGGCGCCGTCGTCGCTGTTAAGATTATCAATGATCGTTCTACTAGGGGAAAGTGCTATGGCTTTGTTACCTTTACAA
ACCCTCGATCTGCTATTGATGCCATAAAAGACATGGATGGAAGGACTATTGAAGGACGGGTTGTCAGAGTTAATGGAGTGAAGAGTAGACTTGGTGGAAGGTTTG
GTAAAGAAGGTAATCGGTTCGATGCAGAGAGGGACGTGAACTGGGAGAGGGATAGAGATCGAGGGAGGGATTATGATCATGATAGGTATCGTCATAGAGGTAGAA
ACAATGACTGGTCTAGAGATCATGATCGGTCTCGAGAACATGATTTGGACAAGGAAAGAGGATATAAGCATTCACAAGATCGTGATCTACCAAAGGATCAATTTT
TGGATAGGGATCCAGAGTTGGAAAAAACTTCAAAGGATAATGAGAAGTTACATGACTTGAAGTTGAACCACGATCAAGATTGGGAAAAAGATCATGGTGCAGATT
TGAGTGGAGGCGGAGGCATTGATAAAACTGATGATTATGATAAAAGCCTTGACAATGACAGAGATCAAGTCTTAAGGAGAGATAACAGTCTTACAATTGAAGGTC
GAACTGCTCGGGATCTTTCATCTGATTCTAGTGATGATTATATCCATGAATTAAAGGAACAACTGGAGATATCAACAGAAAGATTGGAAGAACTCAGAAAAGAGG
CAGGAGAGAGAGGCTCGTTTAGAAATAGTCGGGAAAGTTTCCAGAAAAATTTCAATGTTTCTCAAATAGAGGAGAGGTCAGGAGAGAAAGAAAAACTTGTGGTTG
AGTTGCAAAAGAAAGCCAAGAAACTGGAAGATGCATTGATCAGTGCAAAGAAGCGCTCTTCATTCCGTCAGACACAGCTGATCAAGCTCCATAAAAGCTTTCTGC
TAGTAAAGGATTATTCTAAGAGACTTAAAACCAGCGAACAAGAACTTCAGGCTCTAGTTGAATCAACTGCAATAGAGAGTGATGTTGGATGA
Protein sequenceShow/hide protein sequence
MTVDDDSSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVNW
ERDRDRGRDYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDLKLNHDQDWEKDHGADLSGGGGIDKTDDYDK
SLDNDRDQVLRRDNSLTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEAGERGSFRNSRESFQKNFNVSQIEERSGEKEKLVVELQKKAKKLEDALIS
AKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG