; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MELO3C004643 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C004643
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionReplication protein A subunit
Genome locationchr05:28901439..28902414
RNA-Seq ExpressionMELO3C004643
SyntenyMELO3C004643
Gene Ontology termsGO:0000724 - double-strand break repair via homologous recombination (biological process)
GO:0006268 - DNA unwinding involved in DNA replication (biological process)
GO:0006289 - nucleotide-excision repair (biological process)
GO:0007004 - telomere maintenance via telomerase (biological process)
GO:0007140 - male meiotic nuclear division (biological process)
GO:0009555 - pollen development (biological process)
GO:0005662 - DNA replication factor A complex (cellular component)
GO:0003684 - damaged DNA binding (molecular function)
GO:0043047 - single-stranded telomeric DNA binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR007199 - Replication factor-A protein 1, N-terminal
IPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599522.1 Replication protein A 70 kDa DNA-binding subunit A, partial [Cucurbita argyrosperma subsp. sororia]1.0e-3691.49Show/hide
Query:  MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGNAQERYSLLISDAVSAEQAMLATQLNDIVKTGRVKKGSVIQLIDYVCSPIKNRKFVLSLVL
        MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGN QERYSLLISDAVS EQAMLATQLNDIVKTGRVKKGSVIQLIDYVCSPIK+RK ++ L L
Subjt:  MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGNAQERYSLLISDAVSAEQAMLATQLNDIVKTGRVKKGSVIQLIDYVCSPIKNRKFVLSLVL

KGN60516.1 hypothetical protein Csa_019336 [Cucumis sativus]2.4e-3893.62Show/hide
Query:  MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGNAQERYSLLISDAVSAEQAMLATQLNDIVKTGRVKKGSVIQLIDYVCSPIKNRKFVLSLVL
        MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGNAQERYSLLISDAVSAEQAMLATQLND+VKTGRVKKGSVIQLIDYVCSPIKNRK ++ L L
Subjt:  MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGNAQERYSLLISDAVSAEQAMLATQLNDIVKTGRVKKGSVIQLIDYVCSPIKNRKFVLSLVL

XP_008459663.1 PREDICTED: replication protein A 70 kDa DNA-binding subunit A [Cucumis melo]1.9e-3894.68Show/hide
Query:  MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGNAQERYSLLISDAVSAEQAMLATQLNDIVKTGRVKKGSVIQLIDYVCSPIKNRKFVLSLVL
        MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGNAQERYSLLISDAVSAEQAMLATQLNDIVKTGRVKKGSVIQLIDYVCSPIKNRK ++ L L
Subjt:  MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGNAQERYSLLISDAVSAEQAMLATQLNDIVKTGRVKKGSVIQLIDYVCSPIKNRKFVLSLVL

XP_011648589.2 replication protein A 70 kDa DNA-binding subunit A [Cucumis sativus]2.4e-3893.62Show/hide
Query:  MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGNAQERYSLLISDAVSAEQAMLATQLNDIVKTGRVKKGSVIQLIDYVCSPIKNRKFVLSLVL
        MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGNAQERYSLLISDAVSAEQAMLATQLND+VKTGRVKKGSVIQLIDYVCSPIKNRK ++ L L
Subjt:  MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGNAQERYSLLISDAVSAEQAMLATQLNDIVKTGRVKKGSVIQLIDYVCSPIKNRKFVLSLVL

XP_038890007.1 replication protein A 70 kDa DNA-binding subunit A [Benincasa hispida]7.1e-3890.43Show/hide
Query:  MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGNAQERYSLLISDAVSAEQAMLATQLNDIVKTGRVKKGSVIQLIDYVCSPIKNRKFVLSLVL
        MPVHLTPNAISAIVAGD+NSKPLVQVLDIKLIGNAQERYS+LISDAVSAEQAMLATQLND++KTGRVKKGSVIQLIDYVCSPIKNRK ++ L L
Subjt:  MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGNAQERYSLLISDAVSAEQAMLATQLNDIVKTGRVKKGSVIQLIDYVCSPIKNRKFVLSLVL

TrEMBL top hitse value%identityAlignment
A0A0A0LKL9 Replication protein A subunit1.2e-3893.62Show/hide
Query:  MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGNAQERYSLLISDAVSAEQAMLATQLNDIVKTGRVKKGSVIQLIDYVCSPIKNRKFVLSLVL
        MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGNAQERYSLLISDAVSAEQAMLATQLND+VKTGRVKKGSVIQLIDYVCSPIKNRK ++ L L
Subjt:  MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGNAQERYSLLISDAVSAEQAMLATQLNDIVKTGRVKKGSVIQLIDYVCSPIKNRKFVLSLVL

A0A1S3CAT4 Replication protein A subunit9.0e-3994.68Show/hide
Query:  MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGNAQERYSLLISDAVSAEQAMLATQLNDIVKTGRVKKGSVIQLIDYVCSPIKNRKFVLSLVL
        MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGNAQERYSLLISDAVSAEQAMLATQLNDIVKTGRVKKGSVIQLIDYVCSPIKNRK ++ L L
Subjt:  MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGNAQERYSLLISDAVSAEQAMLATQLNDIVKTGRVKKGSVIQLIDYVCSPIKNRKFVLSLVL

A0A6J1DMC5 Replication protein A subunit2.3e-3484.04Show/hide
Query:  MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGNAQERYSLLISDAVSAEQAMLATQLNDIVKTGRVKKGSVIQLIDYVCSPIKNRKFVLSLVL
        MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIG  QERYSL ISDAVSAE AMLATQLNDIVK GR+KKGSVIQLIDYVCSP++ RK ++ + L
Subjt:  MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGNAQERYSLLISDAVSAEQAMLATQLNDIVKTGRVKKGSVIQLIDYVCSPIKNRKFVLSLVL

A0A6J1G4P2 Replication protein A subunit6.4e-3790.43Show/hide
Query:  MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGNAQERYSLLISDAVSAEQAMLATQLNDIVKTGRVKKGSVIQLIDYVCSPIKNRKFVLSLVL
        MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGN QERYSLLISDAVS EQAMLATQLNDI+KTGRVKKGSVIQLIDYVCSPIK+RK ++ L L
Subjt:  MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGNAQERYSLLISDAVSAEQAMLATQLNDIVKTGRVKKGSVIQLIDYVCSPIKNRKFVLSLVL

A0A6J1KGE2 Replication protein A subunit6.4e-3790.43Show/hide
Query:  MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGNAQERYSLLISDAVSAEQAMLATQLNDIVKTGRVKKGSVIQLIDYVCSPIKNRKFVLSLVL
        MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGN QERYSLLISDAVS EQAMLATQLNDI+KTGRVKKGSVIQLIDYVCSPIK+RK ++ L L
Subjt:  MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGNAQERYSLLISDAVSAEQAMLATQLNDIVKTGRVKKGSVIQLIDYVCSPIKNRKFVLSLVL

SwissProt top hitse value%identityAlignment
F4JSG3 Replication protein A 70 kDa DNA-binding subunit E9.3e-0937.76Show/hide
Query:  MPVHLTPNAISAIVAGDVNSK----PLVQVLDIKLIGNAQ----ERYSLLISDAVSAEQAMLATQLNDIVKTGRVKKGSVIQLIDYVCSPIKNRKFVL
        M V LT  AI  I+ G+V ++    P++QV D+K I   Q    ER+ +++SD     Q ML T LN++VK G ++ GS+++L  +V   IK R+ V+
Subjt:  MPVHLTPNAISAIVAGDVNSK----PLVQVLDIKLIGNAQ----ERYSLLISDAVSAEQAMLATQLNDIVKTGRVKKGSVIQLIDYVCSPIKNRKFVL

Q65XV7 Replication protein A 70 kDa DNA-binding subunit C1.1e-0932.38Show/hide
Query:  MPVHLTPNAISAIVA---GDVNSKPLVQVLDIKLIGNAQ--------ERYSLLISDAVSAEQAMLATQLNDIVKTGRVKKGSVIQLIDYVCSPIKNRKFV
        M   LTP A+ AI     G    +P++QV+D++ +            ER+ +++SD V+ +Q+MLAT LN +VK   ++ G+V+QL D++C+ I+ ++ +
Subjt:  MPVHLTPNAISAIVA---GDVNSKPLVQVLDIKLIGNAQ--------ERYSLLISDAVSAEQAMLATQLNDIVKTGRVKKGSVIQLIDYVCSPIKNRKFV

Query:  LSLVL
        + + L
Subjt:  LSLVL

Q6YZ49 Replication protein A 70 kDa DNA-binding subunit A1.0e-1033.33Show/hide
Query:  LTPNAISAIVAGDVNSKPLVQVLDIKLIG------NAQERYSLLISDAVSAEQAMLATQLNDIVKTGRVKKGSVIQLIDYVCSPIKNRKFVLSLVL
        LTPN ++A +AGD N KP++Q+++++ +          ER+  ++SD  +A  A+ A QL+D  ++G +++GS++QL +YV + +  R+ ++ L L
Subjt:  LTPNAISAIVAGDVNSKPLVQVLDIKLIG------NAQERYSLLISDAVSAEQAMLATQLNDIVKTGRVKKGSVIQLIDYVCSPIKNRKFVLSLVL

Q9FHJ6 Replication protein A 70 kDa DNA-binding subunit C2.1e-0834.29Show/hide
Query:  MPVHLTPNAISAIVAGDVNSK----PLVQVLDIKLIGN-------AQERYSLLISDAVSAEQAMLATQLNDIVKTGRVKKGSVIQLIDYVCSPIKNRKFV
        M V LT   +  ++ G+V S+    P++QV ++KLI +       +  RY  L+SD       ML T LN +V  G ++ GSVI+L  Y+C+ I+ R+ V
Subjt:  MPVHLTPNAISAIVAGDVNSK----PLVQVLDIKLIGN-------AQERYSLLISDAVSAEQAMLATQLNDIVKTGRVKKGSVIQLIDYVCSPIKNRKFV

Query:  LSLVL
        + + L
Subjt:  LSLVL

Q9SKI4 Replication protein A 70 kDa DNA-binding subunit A1.9e-2562.5Show/hide
Query:  MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIG----NAQERYSLLISDAVSAEQAMLATQLNDIVKTGRVKKGSVIQLIDYVCSPIKNRKFVLSL
        MPV LTPNAI+AI  GDVN KPL+QVL+IK+IG     +QERY  LISD VSA+ AM+A QLND VK+G+ +KGS++QLIDY+CS +K RK ++ L
Subjt:  MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIG----NAQERYSLLISDAVSAEQAMLATQLNDIVKTGRVKKGSVIQLIDYVCSPIKNRKFVLSL

Arabidopsis top hitse value%identityAlignment
AT2G06510.1 replication protein A 1A1.3e-2662.5Show/hide
Query:  MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIG----NAQERYSLLISDAVSAEQAMLATQLNDIVKTGRVKKGSVIQLIDYVCSPIKNRKFVLSL
        MPV LTPNAI+AI  GDVN KPL+QVL+IK+IG     +QERY  LISD VSA+ AM+A QLND VK+G+ +KGS++QLIDY+CS +K RK ++ L
Subjt:  MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIG----NAQERYSLLISDAVSAEQAMLATQLNDIVKTGRVKKGSVIQLIDYVCSPIKNRKFVLSL

AT2G06510.2 replication protein A 1A3.6e-1657.75Show/hide
Query:  VLDIKLIG----NAQERYSLLISDAVSAEQAMLATQLNDIVKTGRVKKGSVIQLIDYVCSPIKNRKFVLSL
        VL+IK+IG     +QERY  LISD VSA+ AM+A QLND VK+G+ +KGS++QLIDY+CS +K RK ++ L
Subjt:  VLDIKLIG----NAQERYSLLISDAVSAEQAMLATQLNDIVKTGRVKKGSVIQLIDYVCSPIKNRKFVLSL

AT4G19130.1 Replication factor-A protein 1-related6.6e-1037.76Show/hide
Query:  MPVHLTPNAISAIVAGDVNSK----PLVQVLDIKLIGNAQ----ERYSLLISDAVSAEQAMLATQLNDIVKTGRVKKGSVIQLIDYVCSPIKNRKFVL
        M V LT  AI  I+ G+V ++    P++QV D+K I   Q    ER+ +++SD     Q ML T LN++VK G ++ GS+++L  +V   IK R+ V+
Subjt:  MPVHLTPNAISAIVAGDVNSK----PLVQVLDIKLIGNAQ----ERYSLLISDAVSAEQAMLATQLNDIVKTGRVKKGSVIQLIDYVCSPIKNRKFVL

AT5G45400.1 Replication factor-A protein 1-related1.5e-0934.29Show/hide
Query:  MPVHLTPNAISAIVAGDVNSK----PLVQVLDIKLIGN-------AQERYSLLISDAVSAEQAMLATQLNDIVKTGRVKKGSVIQLIDYVCSPIKNRKFV
        M V LT   +  ++ G+V S+    P++QV ++KLI +       +  RY  L+SD       ML T LN +V  G ++ GSVI+L  Y+C+ I+ R+ V
Subjt:  MPVHLTPNAISAIVAGDVNSK----PLVQVLDIKLIGN-------AQERYSLLISDAVSAEQAMLATQLNDIVKTGRVKKGSVIQLIDYVCSPIKNRKFV

Query:  LSLVL
        + + L
Subjt:  LSLVL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCGGTGCATCTCACGCCCAATGCAATCTCCGCAATTGTCGCTGGCGACGTTAATTCCAAGCCCCTGGTGCAGGTTCTGGATATCAAGCTGATCGGTAACGCGCAGGA
GAGGTACAGCCTCTTGATCTCCGATGCTGTTTCTGCTGAGCAGGCTATGCTCGCCACGCAGCTTAATGATATTGTTAAGACTGGACGAGTCAAGAAAGGATCCGTTATCC
AGTTGATCGATTATGTCTGCAGTCCCATCAAGAACCGCAAGTTCGTTCTCTCCCTCGTACTTCATTGA
mRNA sequenceShow/hide mRNA sequence
ATCCTGTTTTCGAAGGAAAAAGAAACCGCCATGAGATCCATTCCCCGCGCACATATATAATAAACGCACGTCTTGATGAAGCTCGTGTTCGAAGAGTTCCGGCCGAGGAC
TGCACTTTACCATCTCACTACCTCGCCGTCGGGGATTCATCAATTTCTTCGTGATCCTCCACCTTCTCCTCTCGACTCGTTCCCGAGCTCTCTTGCGGTCGTATCTGCAT
CATGCCGGTGCATCTCACGCCCAATGCAATCTCCGCAATTGTCGCTGGCGACGTTAATTCCAAGCCCCTGGTGCAGGTTCTGGATATCAAGCTGATCGGTAACGCGCAGG
AGAGGTACAGCCTCTTGATCTCCGATGCTGTTTCTGCTGAGCAGGCTATGCTCGCCACGCAGCTTAATGATATTGTTAAGACTGGACGAGTCAAGAAAGGATCCGTTATC
CAGTTGATCGATTATGTCTGCAGTCCCATCAAGAACCGCAAGTTCGTTCTCTCCCTCGTACTTCATTGATTACTTTTCGTCATCGCAGTGTGCTAATGAAACCTAATTGT
ATGTGGCGTTATTGTTCATTGTAATTCGCTTACTGGCCTTCTCGGACAAAGTGATGCATGTTTAGTAAAATTAGGTGTGCGCTTGAAGCTTTAAGATGAACTGTTCTGCG
ATTCATAGCTGAAACGGAGAAATGGTTATTTTGCTTTACATTGAAATCTCCTATAGAAAACAGTTTGTATGCTTGTTTAGTTGTTTGAAATGATAGGTGTATGTATGAAT
TACCGTCTAACGTTGATACTATTGTATTAGATTTTGATCATCGTTTGATTGTCAATGAAAGAAATTATTAATTAGTTTCGTG
Protein sequenceShow/hide protein sequence
MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGNAQERYSLLISDAVSAEQAMLATQLNDIVKTGRVKKGSVIQLIDYVCSPIKNRKFVLSLVLH