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MELO3C004808 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C004808
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionRibosomal protein s12
Genome locationchr05:22009822..22010123
RNA-Seq ExpressionMELO3C004808
SyntenyMELO3C004808
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0009536 - plastid (cellular component)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ERM97518.1 hypothetical protein AMTR_s05231p00006790, partial [Amborella trichopoda]1.6e-2496.92Show/hide
Query:  ITCIHALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSIT-GEQVKIEKLTLGLGIIRLELMTSATS
        ITCIHALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSIT GEQVKIEKLTLGLGIIRLELMTS TS
Subjt:  ITCIHALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSIT-GEQVKIEKLTLGLGIIRLELMTSATS

KAF4359988.1 hypothetical protein F8388_004495 [Cannabis sativa]1.2e-2495.45Show/hide
Query:  ITCIHALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSIT-GEQVKIEKLTLGLGIIRLELMTSATSR
        ITCIHALHIRLEFAPRNIAIPTPSRQSH+PLIHSHSIT GEQVKIEKLTLGLGIIRLELMTS TSR
Subjt:  ITCIHALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSIT-GEQVKIEKLTLGLGIIRLELMTSATSR

KAF4360038.1 hypothetical protein G4B88_025799, partial [Cannabis sativa]8.4e-1894.55Show/hide
Query:  FAPRNIAIPTPSRQSHEPLIHSHSIT-GEQVKIEKLTLGLGIIRLELMTSATSRR
        FAPRNIAIPTPSRQSHEPLIHSHSIT GEQVKIEKLTLGLGIIRLELMTS TSR+
Subjt:  FAPRNIAIPTPSRQSHEPLIHSHSIT-GEQVKIEKLTLGLGIIRLELMTSATSRR

KAG9438526.1 hypothetical protein H6P81_021526 [Aristolochia fimbriata]8.7e-2381.01Show/hide
Query:  ITCIHALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSIT-GEQVKIEKLTLGLGIIRLELMTSATSRRHSTAELYPFPCP
        ITCIHALHI LEFAP NIAIPT SRQSHEPLIHSHSIT GEQVKIEKLTLGLGIIRLELMTS TSR  S    +  P P
Subjt:  ITCIHALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSIT-GEQVKIEKLTLGLGIIRLELMTSATSRRHSTAELYPFPCP

TYJ97094.1 hypothetical protein E5676_scaffold23G00250 [Cucumis melo var. makuwa]1.4e-2087.5Show/hide
Query:  ITCIHALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSI-TGEQVKIEKLTLGLGIIRLELMTSAT
        ITCIHA H+RL+FAPR+IAIPTPSRQSHEPLIHSHSI T EQVKIEKLTLGL IIRLELM SAT
Subjt:  ITCIHALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSI-TGEQVKIEKLTLGLGIIRLELMTSAT

TrEMBL top hitse value%identityAlignment
A0A6N2K9N9 Uncharacterized protein4.5e-2587.5Show/hide
Query:  ITCIHALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSIT--GEQVKIEKLTLGLGIIRLELMTSATSRRHSTA
        + CIHALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSIT  GEQVKIEKLTLGLGIIRLELMTS TSR+  T+
Subjt:  ITCIHALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSIT--GEQVKIEKLTLGLGIIRLELMTSATSRRHSTA

A0A6N2KRR2 Uncharacterized protein4.5e-2587.5Show/hide
Query:  ITCIHALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSIT--GEQVKIEKLTLGLGIIRLELMTSATSRRHSTA
        + CIHALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSIT  GEQVKIEKLTLGLGIIRLELMTS TSR+  T+
Subjt:  ITCIHALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSIT--GEQVKIEKLTLGLGIIRLELMTSATSRRHSTA

A0A6N2LAQ4 Uncharacterized protein (Fragment)4.5e-2587.5Show/hide
Query:  ITCIHALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSIT--GEQVKIEKLTLGLGIIRLELMTSATSRRHSTA
        + CIHALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSIT  GEQVKIEKLTLGLGIIRLELMTS TSR+  T+
Subjt:  ITCIHALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSIT--GEQVKIEKLTLGLGIIRLELMTSATSRRHSTA

A0A7J6ENJ8 Uncharacterized protein5.9e-2595.45Show/hide
Query:  ITCIHALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSIT-GEQVKIEKLTLGLGIIRLELMTSATSR
        ITCIHALHIRLEFAPRNIAIPTPSRQSH+PLIHSHSIT GEQVKIEKLTLGLGIIRLELMTS TSR
Subjt:  ITCIHALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSIT-GEQVKIEKLTLGLGIIRLELMTSATSR

U5CXB4 Uncharacterized protein (Fragment)7.7e-2596.92Show/hide
Query:  ITCIHALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSIT-GEQVKIEKLTLGLGIIRLELMTSATS
        ITCIHALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSIT GEQVKIEKLTLGLGIIRLELMTS TS
Subjt:  ITCIHALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSIT-GEQVKIEKLTLGLGIIRLELMTSATS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ataacttgtatccatgcgcttcatattcgcctggagttcgctcccagaaatatagccatccccaccccctcacgtcaatcccacgagcctcttatccattctcattcgat
cacgggggagcaagtcaaaatagaaaaactcacattgggtttagggataatcaggctcgaactgatgacttccgccacgtcaaggcgacactctaccgctgagttatatc
ccttcccttgcccccatcgagaaatagaactgactaatcctaaggcaaagggtcgagaaactcaacgccactattcttga
mRNA sequenceShow/hide mRNA sequence
gcataacttgtatccatgcgcttcatattcgcctggagttcgctcccagaaatatagccatccccaccccctcacgtcaatcccacgagcctcttatccattctcattcg
atcacgggggagcaagtcaaaatagaaaaactcacattgggtttagggataatcaggctcgaactgatgacttccgccacgtcaaggcgacactctaccgctgagttata
tcccttcccttgcccccatcgagaaatagaactgactaatcctaaggcaaagggtcgagaaactcaacgccactattcttga
Protein sequenceShow/hide protein sequence
ITCIHALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSITGEQVKIEKLTLGLGIIRLELMTSATSRRHSTAELYPFPCPHREIELTNPKAKGRETQRHYS