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MELO3C004976 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C004976
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Genome locationchr12:5123054..5123551
RNA-Seq ExpressionMELO3C004976
SyntenyMELO3C004976
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048374.1 retrotransposon protein [Cucumis melo var. makuwa]1.6e-3858.78Show/hide
Query:  NILATTIDSHIKMLKRRFHAISAMQGPFYSSFRWNDELKCIIIEKDVFDDWVKSHSIVKGLLNILFPHYDELSYIFGRDCVMRGRVETFANVGSNVPEGY
        N+ A+TIDS IK+LKR FHAI  M+GP  S F WNDE KCI+ EK+VFDDWV+SH   KGLLN  FPHYDELSY+F +D    GR E+FA+VGSN P GY
Subjt:  NILATTIDSHIKMLKRRFHAISAMQGPFYSSFRWNDELKCIIIEKDVFDDWVKSHSIVKGLLNILFPHYDELSYIFGRDCVMRGRVETFANVGSNVPEGY

Query:  RGFPADDGNDMEIPSMFIQGLDMMPDKIMGT
          F A+  +D +   M+ +GL+M PD++MGT
Subjt:  RGFPADDGNDMEIPSMFIQGLDMMPDKIMGT

KAA0051864.1 retrotransposon protein [Cucumis melo var. makuwa]4.8e-59100Show/hide
Query:  GPFYSSFRWNDELKCIIIEKDVFDDWVKSHSIVKGLLNILFPHYDELSYIFGRDCVMRGRVETFANVGSNVPEGYRGFPADDGNDMEIPSMFIQGLDMMP
        GPFYSSFRWNDELKCIIIEKDVFDDWVKSHSIVKGLLNILFPHYDELSYIFGRDCVMRGRVETFANVGSNVPEGYRGFPADDGNDMEIPSMFIQGLDMMP
Subjt:  GPFYSSFRWNDELKCIIIEKDVFDDWVKSHSIVKGLLNILFPHYDELSYIFGRDCVMRGRVETFANVGSNVPEGYRGFPADDGNDMEIPSMFIQGLDMMP

Query:  DKIMGTLLDK
        DKIMGTLLDK
Subjt:  DKIMGTLLDK

KAA0052248.1 retrotransposon protein [Cucumis melo var. makuwa]7.1e-3958.65Show/hide
Query:  GRNILATTIDSHIKMLKRRFHAISAMQGPFYSSFRWNDELKCIIIEKDVFDDWVKSHSIVKGLLNILFPHYDELSYIFGRDCVMRGRVETFANVGSNVPE
        G N+ A+TIDS IK+LKR FH ++ M+GP  S FRWNDE KCI+IEK  F+DWVKSH   KGLL  LFPHYDELSY+FG+D  M  +VETFA++G N P 
Subjt:  GRNILATTIDSHIKMLKRRFHAISAMQGPFYSSFRWNDELKCIIIEKDVFDDWVKSHSIVKGLLNILFPHYDELSYIFGRDCVMRGRVETFANVGSNVPE

Query:  GYRGFPADDGNDMEIPSMFIQGLDMMPDKIMGT
         Y  F A+   DM+   M+ QGL+M PD++MGT
Subjt:  GYRGFPADDGNDMEIPSMFIQGLDMMPDKIMGT

KAA0066570.1 retrotransposon protein [Cucumis melo var. makuwa]1.2e-3858.65Show/hide
Query:  GRNILATTIDSHIKMLKRRFHAISAMQGPFYSSFRWNDELKCIIIEKDVFDDWVKSHSIVKGLLNILFPHYDELSYIFGRDCVMRGRVETFANVGSNVPE
        G NI A+TIDS IK++KR FHA++ M+GP  S F WNDE KCI+  K+VFDDWVKSH + KGLLN  FPHYDE  Y+FG+D    GR ++FA+VGSN P 
Subjt:  GRNILATTIDSHIKMLKRRFHAISAMQGPFYSSFRWNDELKCIIIEKDVFDDWVKSHSIVKGLLNILFPHYDELSYIFGRDCVMRGRVETFANVGSNVPE

Query:  GYRGFPADDGNDMEIPSMFIQGLDMMPDKIMGT
        GY  F AD   D + P M+ QGL+M PD +MGT
Subjt:  GYRGFPADDGNDMEIPSMFIQGLDMMPDKIMGT

TYK15304.1 retrotransposon protein [Cucumis melo var. makuwa]2.5e-3957.66Show/hide
Query:  GRNILATTIDSHIKMLKRRFHAISAMQGPFYSSFRWNDELKCIIIEKDVFDDWVKSHSIVKGLLNILFPHYDELSYIFGRDCVMRGRVETFANVGSNVPE
        G NI A+TIDS IK++KR FHA++ M+GP  S F WNDE KCI+ EK+VFDDWVKSH + KGLLN  FPHYDE  Y+FG+D    GR ++FA+VGSN P 
Subjt:  GRNILATTIDSHIKMLKRRFHAISAMQGPFYSSFRWNDELKCIIIEKDVFDDWVKSHSIVKGLLNILFPHYDELSYIFGRDCVMRGRVETFANVGSNVPE

Query:  GYRGFPADDGNDMEIPSMFIQGLDMMPDKIMGTLLDK
        GY  F AD   D + P M+ QGL+M PD +MGT + +
Subjt:  GYRGFPADDGNDMEIPSMFIQGLDMMPDKIMGTLLDK

TrEMBL top hitse value%identityAlignment
A0A5A7TZA5 Retrotransposon protein7.7e-3958.78Show/hide
Query:  NILATTIDSHIKMLKRRFHAISAMQGPFYSSFRWNDELKCIIIEKDVFDDWVKSHSIVKGLLNILFPHYDELSYIFGRDCVMRGRVETFANVGSNVPEGY
        N+ A+TIDS IK+LKR FHAI  M+GP  S F WNDE KCI+ EK+VFDDWV+SH   KGLLN  FPHYDELSY+F +D    GR E+FA+VGSN P GY
Subjt:  NILATTIDSHIKMLKRRFHAISAMQGPFYSSFRWNDELKCIIIEKDVFDDWVKSHSIVKGLLNILFPHYDELSYIFGRDCVMRGRVETFANVGSNVPEGY

Query:  RGFPADDGNDMEIPSMFIQGLDMMPDKIMGT
          F A+  +D +   M+ +GL+M PD++MGT
Subjt:  RGFPADDGNDMEIPSMFIQGLDMMPDKIMGT

A0A5A7U941 Retrotransposon protein2.3e-59100Show/hide
Query:  GPFYSSFRWNDELKCIIIEKDVFDDWVKSHSIVKGLLNILFPHYDELSYIFGRDCVMRGRVETFANVGSNVPEGYRGFPADDGNDMEIPSMFIQGLDMMP
        GPFYSSFRWNDELKCIIIEKDVFDDWVKSHSIVKGLLNILFPHYDELSYIFGRDCVMRGRVETFANVGSNVPEGYRGFPADDGNDMEIPSMFIQGLDMMP
Subjt:  GPFYSSFRWNDELKCIIIEKDVFDDWVKSHSIVKGLLNILFPHYDELSYIFGRDCVMRGRVETFANVGSNVPEGYRGFPADDGNDMEIPSMFIQGLDMMP

Query:  DKIMGTLLDK
        DKIMGTLLDK
Subjt:  DKIMGTLLDK

A0A5A7VHC6 Retrotransposon protein5.9e-3958.65Show/hide
Query:  GRNILATTIDSHIKMLKRRFHAISAMQGPFYSSFRWNDELKCIIIEKDVFDDWVKSHSIVKGLLNILFPHYDELSYIFGRDCVMRGRVETFANVGSNVPE
        G NI A+TIDS IK++KR FHA++ M+GP  S F WNDE KCI+  K+VFDDWVKSH + KGLLN  FPHYDE  Y+FG+D    GR ++FA+VGSN P 
Subjt:  GRNILATTIDSHIKMLKRRFHAISAMQGPFYSSFRWNDELKCIIIEKDVFDDWVKSHSIVKGLLNILFPHYDELSYIFGRDCVMRGRVETFANVGSNVPE

Query:  GYRGFPADDGNDMEIPSMFIQGLDMMPDKIMGT
        GY  F AD   D + P M+ QGL+M PD +MGT
Subjt:  GYRGFPADDGNDMEIPSMFIQGLDMMPDKIMGT

A0A5D3BSM9 Retrotransposon protein3.5e-3958.65Show/hide
Query:  GRNILATTIDSHIKMLKRRFHAISAMQGPFYSSFRWNDELKCIIIEKDVFDDWVKSHSIVKGLLNILFPHYDELSYIFGRDCVMRGRVETFANVGSNVPE
        G N+ A+TIDS IK+LKR FH ++ M+GP  S FRWNDE KCI+IEK  F+DWVKSH   KGLL  LFPHYDELSY+FG+D  M  +VETFA++G N P 
Subjt:  GRNILATTIDSHIKMLKRRFHAISAMQGPFYSSFRWNDELKCIIIEKDVFDDWVKSHSIVKGLLNILFPHYDELSYIFGRDCVMRGRVETFANVGSNVPE

Query:  GYRGFPADDGNDMEIPSMFIQGLDMMPDKIMGT
         Y  F A+   DM+   M+ QGL+M PD++MGT
Subjt:  GYRGFPADDGNDMEIPSMFIQGLDMMPDKIMGT

A0A5D3CWJ7 Retrotransposon protein1.2e-3957.66Show/hide
Query:  GRNILATTIDSHIKMLKRRFHAISAMQGPFYSSFRWNDELKCIIIEKDVFDDWVKSHSIVKGLLNILFPHYDELSYIFGRDCVMRGRVETFANVGSNVPE
        G NI A+TIDS IK++KR FHA++ M+GP  S F WNDE KCI+ EK+VFDDWVKSH + KGLLN  FPHYDE  Y+FG+D    GR ++FA+VGSN P 
Subjt:  GRNILATTIDSHIKMLKRRFHAISAMQGPFYSSFRWNDELKCIIIEKDVFDDWVKSHSIVKGLLNILFPHYDELSYIFGRDCVMRGRVETFANVGSNVPE

Query:  GYRGFPADDGNDMEIPSMFIQGLDMMPDKIMGTLLDK
        GY  F AD   D + P M+ QGL+M PD +MGT + +
Subjt:  GYRGFPADDGNDMEIPSMFIQGLDMMPDKIMGTLLDK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTAGGTCGTAACATCCTTGCTACGACTATTGATAGTCATATAAAAATGCTAAAGAGAAGGTTCCATGCTATATCCGCGATGCAGGGCCCGTTTTACAGTAGTTTTAG
ATGGAACGATGAACTGAAGTGCATTATTATAGAGAAGGATGTGTTCGACGATTGGGTGAAGAGTCATTCTATTGTGAAGGGCCTACTAAACATATTATTTCCCCATTACG
ACGAACTTTCCTACATCTTTGGGAGAGATTGTGTGATGAGAGGGCGTGTGGAGACATTCGCCAATGTCGGGTCGAATGTGCCTGAAGGGTATAGAGGATTTCCCGCTGAC
GATGGCAACGATATGGAGATCCCTAGTATGTTCATTCAGGGACTAGACATGATGCCTGACAAAATAATGGGCACTCTACTCGACAAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTAGGTCGTAACATCCTTGCTACGACTATTGATAGTCATATAAAAATGCTAAAGAGAAGGTTCCATGCTATATCCGCGATGCAGGGCCCGTTTTACAGTAGTTTTAG
ATGGAACGATGAACTGAAGTGCATTATTATAGAGAAGGATGTGTTCGACGATTGGGTGAAGAGTCATTCTATTGTGAAGGGCCTACTAAACATATTATTTCCCCATTACG
ACGAACTTTCCTACATCTTTGGGAGAGATTGTGTGATGAGAGGGCGTGTGGAGACATTCGCCAATGTCGGGTCGAATGTGCCTGAAGGGTATAGAGGATTTCCCGCTGAC
GATGGCAACGATATGGAGATCCCTAGTATGTTCATTCAGGGACTAGACATGATGCCTGACAAAATAATGGGCACTCTACTCGACAAGTAA
Protein sequenceShow/hide protein sequence
MLGRNILATTIDSHIKMLKRRFHAISAMQGPFYSSFRWNDELKCIIIEKDVFDDWVKSHSIVKGLLNILFPHYDELSYIFGRDCVMRGRVETFANVGSNVPEGYRGFPAD
DGNDMEIPSMFIQGLDMMPDKIMGTLLDK