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MELO3C004979 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C004979
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Genome locationchr12:5051359..5051675
RNA-Seq ExpressionMELO3C004979
SyntenyMELO3C004979
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051872.1 retrotransposon protein [Cucumis melo var. makuwa]3.6e-51100Show/hide
Query:  LEQSHLATKGLLNRSFSHYYDLSYVFGRDYATGGRSETFADVGSNDPFGYEEFTTGDGNDMEIRTMFKQGLNMSLDEFMRSHPGSQVMVEMLQAGQRGRG
        LEQSHLATKGLLNRSFSHYYDLSYVFGRDYATGGRSETFADVGSNDPFGYEEFTTGDGNDMEIRTMFKQGLNMSLDEFMRSHPGSQVMVEMLQAGQRGRG
Subjt:  LEQSHLATKGLLNRSFSHYYDLSYVFGRDYATGGRSETFADVGSNDPFGYEEFTTGDGNDMEIRTMFKQGLNMSLDEFMRSHPGSQVMVEMLQAGQRGRG

Query:  AASL
        AASL
Subjt:  AASL

KAA0055062.1 retrotransposon protein [Cucumis melo var. makuwa]1.4e-1863.64Show/hide
Query:  QSHLATKGLLNRSFSHYYDLSYVFGRDYATGGRSETFADVGSNDPFGYEEFTTGDGNDMEIRTMFKQGLNMSLDEFM
        +SH A +GLLN+ F HY +LSYVFG+D ATGGR+ETFADVGSNDP GYE F     +DM+ ++M+ QGLNMS DE M
Subjt:  QSHLATKGLLNRSFSHYYDLSYVFGRDYATGGRSETFADVGSNDPFGYEEFTTGDGNDMEIRTMFKQGLNMSLDEFM

KAA0056167.1 retrotransposon protein [Cucumis melo var. makuwa]4.0e-1861.25Show/hide
Query:  SHLATKGLLNRSFSHYYDLSYVFGRDYATGGRSETFADVGSNDPFGYEEFTTGDGNDMEIRTMFKQGLNMSLDEFMRSHP
        SHL  KG+LNRSFSHY +L YVFGRD+ TGG  ETF +VGSN   GYE F   DGND+EI +M+ QGL+MS D+ M + P
Subjt:  SHLATKGLLNRSFSHYYDLSYVFGRDYATGGRSETFADVGSNDPFGYEEFTTGDGNDMEIRTMFKQGLNMSLDEFMRSHP

KAA0066059.1 retrotransposon protein [Cucumis melo var. makuwa]6.1e-1957.14Show/hide
Query:  QSHLATKGLLNRSFSHYYDLSYVFGR---DYATGGRSETFADVGSNDPFGYEEFTTGDGNDMEIRTMFKQGLNMSLDEFMRSHPGSQVMVEMLQAGQRGR
        ++H A K LLNRSF HY +LSY+F R   + A G         GSN PFGYE   TGDGN+M+I TMF QGLNMS +EF+  +   QVMV MLQAGQRGR
Subjt:  QSHLATKGLLNRSFSHYYDLSYVFGR---DYATGGRSETFADVGSNDPFGYEEFTTGDGNDMEIRTMFKQGLNMSLDEFMRSHPGSQVMVEMLQAGQRGR

Query:  GAASL
        G  SL
Subjt:  GAASL

TYK11084.1 retrotransposon protein [Cucumis melo var. makuwa]1.0e-1863.75Show/hide
Query:  SHLATKGLLNRSFSHYYDLSYVFGRDYATGGRSETFADVGSNDPFGYEEFTTGDGNDMEIRTMFKQGLNMSLDEFMRSHP
        SHLA KGLLNRSFSHY +L YVFGRD+ TGG  ETF +VGSN   GYE F   DGND+EI +M+ QGL+MS D+ M + P
Subjt:  SHLATKGLLNRSFSHYYDLSYVFGRDYATGGRSETFADVGSNDPFGYEEFTTGDGNDMEIRTMFKQGLNMSLDEFMRSHP

TrEMBL top hitse value%identityAlignment
A0A5A7UGW0 Retrotransposon protein6.6e-1963.64Show/hide
Query:  QSHLATKGLLNRSFSHYYDLSYVFGRDYATGGRSETFADVGSNDPFGYEEFTTGDGNDMEIRTMFKQGLNMSLDEFM
        +SH A +GLLN+ F HY +LSYVFG+D ATGGR+ETFADVGSNDP GYE F     +DM+ ++M+ QGLNMS DE M
Subjt:  QSHLATKGLLNRSFSHYYDLSYVFGRDYATGGRSETFADVGSNDPFGYEEFTTGDGNDMEIRTMFKQGLNMSLDEFM

A0A5A7UNI7 Retrotransposon protein1.9e-1861.25Show/hide
Query:  SHLATKGLLNRSFSHYYDLSYVFGRDYATGGRSETFADVGSNDPFGYEEFTTGDGNDMEIRTMFKQGLNMSLDEFMRSHP
        SHL  KG+LNRSFSHY +L YVFGRD+ TGG  ETF +VGSN   GYE F   DGND+EI +M+ QGL+MS D+ M + P
Subjt:  SHLATKGLLNRSFSHYYDLSYVFGRDYATGGRSETFADVGSNDPFGYEEFTTGDGNDMEIRTMFKQGLNMSLDEFMRSHP

A0A5A7VL62 Retrotransposon protein3.0e-1957.14Show/hide
Query:  QSHLATKGLLNRSFSHYYDLSYVFGR---DYATGGRSETFADVGSNDPFGYEEFTTGDGNDMEIRTMFKQGLNMSLDEFMRSHPGSQVMVEMLQAGQRGR
        ++H A K LLNRSF HY +LSY+F R   + A G         GSN PFGYE   TGDGN+M+I TMF QGLNMS +EF+  +   QVMV MLQAGQRGR
Subjt:  QSHLATKGLLNRSFSHYYDLSYVFGR---DYATGGRSETFADVGSNDPFGYEEFTTGDGNDMEIRTMFKQGLNMSLDEFMRSHPGSQVMVEMLQAGQRGR

Query:  GAASL
        G  SL
Subjt:  GAASL

A0A5D3CIS8 Retrotransposon protein5.1e-1963.75Show/hide
Query:  SHLATKGLLNRSFSHYYDLSYVFGRDYATGGRSETFADVGSNDPFGYEEFTTGDGNDMEIRTMFKQGLNMSLDEFMRSHP
        SHLA KGLLNRSFSHY +L YVFGRD+ TGG  ETF +VGSN   GYE F   DGND+EI +M+ QGL+MS D+ M + P
Subjt:  SHLATKGLLNRSFSHYYDLSYVFGRDYATGGRSETFADVGSNDPFGYEEFTTGDGNDMEIRTMFKQGLNMSLDEFMRSHP

A0A5D3DCR5 Retrotransposon protein1.7e-51100Show/hide
Query:  LEQSHLATKGLLNRSFSHYYDLSYVFGRDYATGGRSETFADVGSNDPFGYEEFTTGDGNDMEIRTMFKQGLNMSLDEFMRSHPGSQVMVEMLQAGQRGRG
        LEQSHLATKGLLNRSFSHYYDLSYVFGRDYATGGRSETFADVGSNDPFGYEEFTTGDGNDMEIRTMFKQGLNMSLDEFMRSHPGSQVMVEMLQAGQRGRG
Subjt:  LEQSHLATKGLLNRSFSHYYDLSYVFGRDYATGGRSETFADVGSNDPFGYEEFTTGDGNDMEIRTMFKQGLNMSLDEFMRSHPGSQVMVEMLQAGQRGRG

Query:  AASL
        AASL
Subjt:  AASL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTTGAACAGAGTCATCTTGCTACGAAGGGCCTACTAAATAGATCATTTTCCCATTATTACGACCTTTCCTACGTCTTTGGAAGAGATTATGCAACAGGAGGACGC
TCGGAGACATTTGCAGATGTGGGGTCAAATGACCCTTTTGGGTACGAGGAATTTACCACTGGCGATGGAAATGATATGGAGATTCGTACTATGTTTAAACAGGGA
CTAAACATGTCGCTTGATGAATTTATGCGCAGTCACCCAGGCAGTCAAGTGATGGTAGAAATGCTTCAAGCAGGTCAAAGAGGAAGAGGGGCGGCTAGCCTATAG
mRNA sequenceShow/hide mRNA sequence
CACTTGAACAGAGTCATCTTGCTACGAAGGGCCTACTAAATAGATCATTTTCCCATTATTACGACCTTTCCTACGTCTTTGGAAGAGATTATGCAACAGGAGGAC
GCTCGGAGACATTTGCAGATGTGGGGTCAAATGACCCTTTTGGGTACGAGGAATTTACCACTGGCGATGGAAATGATATGGAGATTCGTACTATGTTTAAACAGG
GACTAAACATGTCGCTTGATGAATTTATGCGCAGTCACCCAGGCAGTCAAGTGATGGTAGAAATGCTTCAAGCAGGTCAAAGAGGAAGAGGGGCGGCTAGCCTAT
AG
Protein sequenceShow/hide protein sequence
LEQSHLATKGLLNRSFSHYYDLSYVFGRDYATGGRSETFADVGSNDPFGYEEFTTGDGNDMEIRTMFKQGLNMSLDEFMRSHPGSQVMVEMLQAGQRGRGAASL