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MELO3C005151 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C005151
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionWD_REPEATS_REGION domain-containing protein
Genome locationchr09:16620624..16620815
RNA-Seq ExpressionMELO3C005151
SyntenyMELO3C005151
Gene Ontology termsGO:0006364 - rRNA processing (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043115.1 periodic tryptophan protein 1-like protein [Cucumis melo var. makuwa]8.3e-1996.36Show/hide
Query:  MDVEDVSDEEIVNALAVAQALGKSSETTNLETKYDDIAEGLKELDMDNYDNEDDG
        MDVED SDEEI NALAVAQALGKSSETTNLETKYDDIAEGLKELDMDNYDNEDDG
Subjt:  MDVEDVSDEEIVNALAVAQALGKSSETTNLETKYDDIAEGLKELDMDNYDNEDDG
KAA0050205.1 periodic tryptophan protein 1-like protein [Cucumis melo var. makuwa]1.7e-24100Show/hide
Query:  MDVEDVSDEEIVNALAVAQALGKSSETTNLETKYDDIAEGLKELDMDNYDNEDDGILILPPLI
        MDVEDVSDEEIVNALAVAQALGKSSETTNLETKYDDIAEGLKELDMDNYDNEDDGILILPPLI
Subjt:  MDVEDVSDEEIVNALAVAQALGKSSETTNLETKYDDIAEGLKELDMDNYDNEDDGILILPPLI
TYJ96216.1 periodic tryptophan protein 1-like protein [Cucumis melo var. makuwa]8.3e-1996.36Show/hide
Query:  MDVEDVSDEEIVNALAVAQALGKSSETTNLETKYDDIAEGLKELDMDNYDNEDDG
        MDVED SDEEI NALAVAQALGKSSETTNLETKYDDIAEGLKELDMDNYDNEDDG
Subjt:  MDVEDVSDEEIVNALAVAQALGKSSETTNLETKYDDIAEGLKELDMDNYDNEDDG
XP_004149077.1 uncharacterized WD repeat-containing protein C17D11.16 [Cucumis sativus]1.3e-1689.29Show/hide
Query:  MDVEDVSDEEIVNALAVAQALGKSSETTNLETKYDDIAEGLKELDMDNYDNEDDGI
        MDVED +DEEI NALAVAQALGKSSET NLETKYDDIAE LKELDMDNYDNEDD I
Subjt:  MDVEDVSDEEIVNALAVAQALGKSSETTNLETKYDDIAEGLKELDMDNYDNEDDGI
XP_008452352.1 PREDICTED: periodic tryptophan protein 1 homolog [Cucumis melo]2.4e-1894.64Show/hide
Query:  MDVEDVSDEEIVNALAVAQALGKSSETTNLETKYDDIAEGLKELDMDNYDNEDDGI
        MDVED SDEEI NALAVAQALGKSSETTNLETKYDDIAEGLKELDMDNYDNEDD I
Subjt:  MDVEDVSDEEIVNALAVAQALGKSSETTNLETKYDDIAEGLKELDMDNYDNEDDGI
TrEMBL top hitse value%identityAlignment
A0A0A0LH54 WD_REPEATS_REGION domain-containing protein6.4e-1789.29Show/hide
Query:  MDVEDVSDEEIVNALAVAQALGKSSETTNLETKYDDIAEGLKELDMDNYDNEDDGI
        MDVED +DEEI NALAVAQALGKSSET NLETKYDDIAE LKELDMDNYDNEDD I
Subjt:  MDVEDVSDEEIVNALAVAQALGKSSETTNLETKYDDIAEGLKELDMDNYDNEDDGI
A0A1S3BUS3 periodic tryptophan protein 1 homolog1.2e-1894.64Show/hide
Query:  MDVEDVSDEEIVNALAVAQALGKSSETTNLETKYDDIAEGLKELDMDNYDNEDDGI
        MDVED SDEEI NALAVAQALGKSSETTNLETKYDDIAEGLKELDMDNYDNEDD I
Subjt:  MDVEDVSDEEIVNALAVAQALGKSSETTNLETKYDDIAEGLKELDMDNYDNEDDGI
A0A5A7TNX2 Periodic tryptophan protein 1-like protein4.0e-1996.36Show/hide
Query:  MDVEDVSDEEIVNALAVAQALGKSSETTNLETKYDDIAEGLKELDMDNYDNEDDG
        MDVED SDEEI NALAVAQALGKSSETTNLETKYDDIAEGLKELDMDNYDNEDDG
Subjt:  MDVEDVSDEEIVNALAVAQALGKSSETTNLETKYDDIAEGLKELDMDNYDNEDDG
A0A5A7U9C7 Periodic tryptophan protein 1-like protein8.4e-25100Show/hide
Query:  MDVEDVSDEEIVNALAVAQALGKSSETTNLETKYDDIAEGLKELDMDNYDNEDDGILILPPLI
        MDVEDVSDEEIVNALAVAQALGKSSETTNLETKYDDIAEGLKELDMDNYDNEDDGILILPPLI
Subjt:  MDVEDVSDEEIVNALAVAQALGKSSETTNLETKYDDIAEGLKELDMDNYDNEDDGILILPPLI
A0A5D3BBF1 Periodic tryptophan protein 1-like protein4.0e-1996.36Show/hide
Query:  MDVEDVSDEEIVNALAVAQALGKSSETTNLETKYDDIAEGLKELDMDNYDNEDDG
        MDVED SDEEI NALAVAQALGKSSETTNLETKYDDIAEGLKELDMDNYDNEDDG
Subjt:  MDVEDVSDEEIVNALAVAQALGKSSETTNLETKYDDIAEGLKELDMDNYDNEDDG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G18900.1 Transducin/WD40 repeat-like superfamily protein3.7e-0953.23Show/hide
Query:  EDVSDE----EIVNALAVAQALGKSSETTNLETKY---DDIAEGLKELDMDNYDNEDDGILI
        E+  DE    E+ +A AVA+  GKSS++ N+ +     D++AEGLKELDMDNYD EDDGI I
Subjt:  EDVSDE----EIVNALAVAQALGKSSETTNLETKY---DDIAEGLKELDMDNYDNEDDGILI
AT4G18905.1 Transducin/WD40 repeat-like superfamily protein1.6e-0752.63Show/hide
Query:  DVEDVSDEEIVNALAVAQALGKSSETTNLET--KYDDIAEGLKELDMDNYDNEDDGI
        D E++S  E+ +A AVA+ALGKSS++  + +  + D++++GLKELDMDNYD EDD I
Subjt:  DVEDVSDEEIVNALAVAQALGKSSETTNLET--KYDDIAEGLKELDMDNYDNEDDGI
AT4G18905.2 Transducin/WD40 repeat-like superfamily protein1.6e-0752.63Show/hide
Query:  DVEDVSDEEIVNALAVAQALGKSSETTNLET--KYDDIAEGLKELDMDNYDNEDDGI
        D E++S  E+ +A AVA+ALGKSS++  + +  + D++++GLKELDMDNYD EDD I
Subjt:  DVEDVSDEEIVNALAVAQALGKSSETTNLET--KYDDIAEGLKELDMDNYDNEDDGI
AT4G35370.1 Transducin/WD40 repeat-like superfamily protein3.0e-0641.51Show/hide
Query:  EDVSDEEIVNALAVAQALGKSSETTNLETKYDDIAEGLKELDMDNYDNEDDGI
        +++ + ++ +A +VA++ GKS   ++  T  D++ + LKELDMDNYD EDD I
Subjt:  EDVSDEEIVNALAVAQALGKSSETTNLETKYDDIAEGLKELDMDNYDNEDDGI

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGTTGAAGACGTCAGTGATGAAGAGATTGTCAATGCCCTAGCTGTTGCACAAGCACTTGGAAAATCTTCTGAGACCACGAATCTAGAAACCAAATATGACGACAT
TGCTGAAGGTTTGAAGGAACTCGACATGGACAATTATGATAACGAAGATGATGGTATTCTCATCCTCCCGCCCCTGATTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATGTTGAAGACGTCAGTGATGAAGAGATTGTCAATGCCCTAGCTGTTGCACAAGCACTTGGAAAATCTTCTGAGACCACGAATCTAGAAACCAAATATGACGACAT
TGCTGAAGGTTTGAAGGAACTCGACATGGACAATTATGATAACGAAGATGATGGTATTCTCATCCTCCCGCCCCTGATTTAA
Protein sequenceShow/hide protein sequence
MDVEDVSDEEIVNALAVAQALGKSSETTNLETKYDDIAEGLKELDMDNYDNEDDGILILPPLI