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MELO3C005280 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C005280
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Genome locationchr09:18754753..18755262
RNA-Seq ExpressionMELO3C005280
SyntenyMELO3C005280
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033884.1 retrotransposon protein [Cucumis melo var. makuwa]2.4e-2048.89Show/hide
Query:  MRGPACNRFRWNNEVKCIIVEKELFDNWFRRRVS----LTNLFPIMTKL---HMWSGGIGRGVALQTCSPDVGSNEPTEYEGFDMSGENDMEFPSMYNQE
        MR PAC+ F+WN+E K IIVEKE+FDNW R   +    L  LF    +L     W    GR V       D+GSNEP  YEGFDMS  ND+EFP MY+Q 
Subjt:  MRGPACNRFRWNNEVKCIIVEKELFDNWFRRRVS----LTNLFPIMTKL---HMWSGGIGRGVALQTCSPDVGSNEPTEYEGFDMSGENDMEFPSMYNQE

Query:  IDMFQDDVCTSQPTHASDDSSDRADPSERREASAR
        ID+ QDDV TSQP   + D   R+  S+R+  S R
Subjt:  IDMFQDDVCTSQPTHASDDSSDRADPSERREASAR

KAA0046362.1 retrotransposon protein [Cucumis melo var. makuwa]1.8e-6899.22Show/hide
Query:  MRGPACNRFRWNNEVKCIIVEKELFDNWFRRRVSLTNLFPIMTKLHMWSGGIGRGVALQTCSPDVGSNEPTEYEGFDMSGENDMEFPSMYNQEIDMFQDD
        MRGPACNRFRWNNEVKCIIVEKELFDNWFRRRVSLTNLFPIMTKLHMWSGGIGRGVALQTCSPDVGSNEPTEYEGFDMSGENDMEFPSMYNQEIDMFQDD
Subjt:  MRGPACNRFRWNNEVKCIIVEKELFDNWFRRRVSLTNLFPIMTKLHMWSGGIGRGVALQTCSPDVGSNEPTEYEGFDMSGENDMEFPSMYNQEIDMFQDD

Query:  VCTSQPTHASDDSSDRADPSERREASARV
        VCTSQPTHASDDSSDRADPSERREASAR+
Subjt:  VCTSQPTHASDDSSDRADPSERREASARV

KAA0046602.1 retrotransposon protein [Cucumis melo var. makuwa]5.1e-1847.62Show/hide
Query:  MRGPACNRFRWNNEVKCIIVEKELFDNWFRRRVSLTNLFPIMTKL-HMWSGGIGRGVALQTCSPDVGSNEPTEYEGFDMSGENDMEFPSMYNQEIDMFQD
        M G AC+RFRWN+E KCII EKEL       +  L   F    KL +++      G  ++T + D+GSNE  EYEGFDMS  NDM+FPSMY+Q IDM QD
Subjt:  MRGPACNRFRWNNEVKCIIVEKELFDNWFRRRVSLTNLFPIMTKL-HMWSGGIGRGVALQTCSPDVGSNEPTEYEGFDMSGENDMEFPSMYNQEIDMFQD

Query:  DVCTSQPTHASDDSSDRADPSERREA
        DV  S+P H SD     +    +RE+
Subjt:  DVCTSQPTHASDDSSDRADPSERREA

KAA0050217.1 retrotransposon protein [Cucumis melo var. makuwa]2.3e-1847.01Show/hide
Query:  FRWNNEVKCIIVEKELFDNWFRRRVSLTN---------LFPIMTKL-HMWSGGIGRGVALQTCSPDVGSNEPTEYEGFDMSGENDMEFPSMYNQEIDMFQ
        F WN+E KCII +KELFDNW +  V +++         LFP   +L +++      G  ++T   DV SNEP  YEGFD+   NDM+F SMY+Q  DM  
Subjt:  FRWNNEVKCIIVEKELFDNWFRRRVSLTN---------LFPIMTKL-HMWSGGIGRGVALQTCSPDVGSNEPTEYEGFDMSGENDMEFPSMYNQEIDMFQ

Query:  DDVCTSQPTHASDDSSDRADPSERREASARVRLR
        +DV   +P  AS+  +DRADPS+R EAS RVRLR
Subjt:  DDVCTSQPTHASDDSSDRADPSERREASARVRLR

KAA0066061.1 retrotransposon protein [Cucumis melo var. makuwa]3.9e-1850.94Show/hide
Query:  MRGPACNRFRWNNEVKCIIVEKELFDNWFRRRVSLTNLFPIMTKL-HMWSGGIGRGVALQTCSPDVGSNEPTEYEGFDMSGENDMEFPSMYNQEIDMFQD
        M GP+C+ F WN+E KCII EKELFDNW   +  L   F    +L +++      G  ++T + DVGSNEP  Y+GFDM   NDMEFPSMY+Q IDM QD
Subjt:  MRGPACNRFRWNNEVKCIIVEKELFDNWFRRRVSLTNLFPIMTKL-HMWSGGIGRGVALQTCSPDVGSNEPTEYEGFDMSGENDMEFPSMYNQEIDMFQD

Query:  DVCTSQ
        D    Q
Subjt:  DVCTSQ

TrEMBL top hitse value%identityAlignment
A0A5A7TT49 Retrotransposon protein2.4e-1847.62Show/hide
Query:  MRGPACNRFRWNNEVKCIIVEKELFDNWFRRRVSLTNLFPIMTKL-HMWSGGIGRGVALQTCSPDVGSNEPTEYEGFDMSGENDMEFPSMYNQEIDMFQD
        M G AC+RFRWN+E KCII EKEL       +  L   F    KL +++      G  ++T + D+GSNE  EYEGFDMS  NDM+FPSMY+Q IDM QD
Subjt:  MRGPACNRFRWNNEVKCIIVEKELFDNWFRRRVSLTNLFPIMTKL-HMWSGGIGRGVALQTCSPDVGSNEPTEYEGFDMSGENDMEFPSMYNQEIDMFQD

Query:  DVCTSQPTHASDDSSDRADPSERREA
        DV  S+P H SD     +    +RE+
Subjt:  DVCTSQPTHASDDSSDRADPSERREA

A0A5A7U768 Retrotransposon protein1.1e-1847.01Show/hide
Query:  FRWNNEVKCIIVEKELFDNWFRRRVSLTN---------LFPIMTKL-HMWSGGIGRGVALQTCSPDVGSNEPTEYEGFDMSGENDMEFPSMYNQEIDMFQ
        F WN+E KCII +KELFDNW +  V +++         LFP   +L +++      G  ++T   DV SNEP  YEGFD+   NDM+F SMY+Q  DM  
Subjt:  FRWNNEVKCIIVEKELFDNWFRRRVSLTN---------LFPIMTKL-HMWSGGIGRGVALQTCSPDVGSNEPTEYEGFDMSGENDMEFPSMYNQEIDMFQ

Query:  DDVCTSQPTHASDDSSDRADPSERREASARVRLR
        +DV   +P  AS+  +DRADPS+R EAS RVRLR
Subjt:  DDVCTSQPTHASDDSSDRADPSERREASARVRLR

A0A5D3BL06 Retrotransposon protein1.9e-1850.94Show/hide
Query:  MRGPACNRFRWNNEVKCIIVEKELFDNWFRRRVSLTNLFPIMTKL-HMWSGGIGRGVALQTCSPDVGSNEPTEYEGFDMSGENDMEFPSMYNQEIDMFQD
        M GP+C+ F WN+E KCII EKELFDNW   +  L   F    +L +++      G  ++T + DVGSNEP  Y+GFDM   NDMEFPSMY+Q IDM QD
Subjt:  MRGPACNRFRWNNEVKCIIVEKELFDNWFRRRVSLTNLFPIMTKL-HMWSGGIGRGVALQTCSPDVGSNEPTEYEGFDMSGENDMEFPSMYNQEIDMFQD

Query:  DVCTSQ
        D    Q
Subjt:  DVCTSQ

A0A5D3BQI7 Retrotransposon protein1.2e-2048.89Show/hide
Query:  MRGPACNRFRWNNEVKCIIVEKELFDNWFRRRVS----LTNLFPIMTKL---HMWSGGIGRGVALQTCSPDVGSNEPTEYEGFDMSGENDMEFPSMYNQE
        MR PAC+ F+WN+E K IIVEKE+FDNW R   +    L  LF    +L     W    GR V       D+GSNEP  YEGFDMS  ND+EFP MY+Q 
Subjt:  MRGPACNRFRWNNEVKCIIVEKELFDNWFRRRVS----LTNLFPIMTKL---HMWSGGIGRGVALQTCSPDVGSNEPTEYEGFDMSGENDMEFPSMYNQE

Query:  IDMFQDDVCTSQPTHASDDSSDRADPSERREASAR
        ID+ QDDV TSQP   + D   R+  S+R+  S R
Subjt:  IDMFQDDVCTSQPTHASDDSSDRADPSERREASAR

A0A5D3E3R5 Retrotransposon protein8.9e-6999.22Show/hide
Query:  MRGPACNRFRWNNEVKCIIVEKELFDNWFRRRVSLTNLFPIMTKLHMWSGGIGRGVALQTCSPDVGSNEPTEYEGFDMSGENDMEFPSMYNQEIDMFQDD
        MRGPACNRFRWNNEVKCIIVEKELFDNWFRRRVSLTNLFPIMTKLHMWSGGIGRGVALQTCSPDVGSNEPTEYEGFDMSGENDMEFPSMYNQEIDMFQDD
Subjt:  MRGPACNRFRWNNEVKCIIVEKELFDNWFRRRVSLTNLFPIMTKLHMWSGGIGRGVALQTCSPDVGSNEPTEYEGFDMSGENDMEFPSMYNQEIDMFQDD

Query:  VCTSQPTHASDDSSDRADPSERREASARV
        VCTSQPTHASDDSSDRADPSERREASAR+
Subjt:  VCTSQPTHASDDSSDRADPSERREASARV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGTGGGCCAGCATGCAACAGGTTCAGATGGAACAATGAGGTAAAGTGCATCATTGTCGAGAAGGAACTGTTCGACAACTGGTTTAGGCGAAGGGTCTCCTTAACAAA
CCTTTTTCCTATTATGACAAAGTTACATATGTGGTCAGGAGGGATAGGGCGAGGTGTCGCTTTGCAGACATGTTCACCCGACGTCGGGTCTAATGAGCCCACCGAATATG
AGGGGTTTGACATGTCGGGTGAAAATGATATGGAGTTTCCATCCATGTACAACCAAGAGATTGACATGTTTCAAGATGATGTATGCACATCACAACCTACTCACGCATCA
GACGATAGTTCTGATCGAGCGGATCCAAGTGAAAGAAGGGAAGCTAGCGCGAGGGTAAGATTGAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGCGTGGGCCAGCATGCAACAGGTTCAGATGGAACAATGAGGTAAAGTGCATCATTGTCGAGAAGGAACTGTTCGACAACTGGTTTAGGCGAAGGGTCTCCTTAACAAA
CCTTTTTCCTATTATGACAAAGTTACATATGTGGTCAGGAGGGATAGGGCGAGGTGTCGCTTTGCAGACATGTTCACCCGACGTCGGGTCTAATGAGCCCACCGAATATG
AGGGGTTTGACATGTCGGGTGAAAATGATATGGAGTTTCCATCCATGTACAACCAAGAGATTGACATGTTTCAAGATGATGTATGCACATCACAACCTACTCACGCATCA
GACGATAGTTCTGATCGAGCGGATCCAAGTGAAAGAAGGGAAGCTAGCGCGAGGGTAAGATTGAGATGA
Protein sequenceShow/hide protein sequence
MRGPACNRFRWNNEVKCIIVEKELFDNWFRRRVSLTNLFPIMTKLHMWSGGIGRGVALQTCSPDVGSNEPTEYEGFDMSGENDMEFPSMYNQEIDMFQDDVCTSQPTHAS
DDSSDRADPSERREASARVRLR