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MELO3C005580 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C005580
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
Description40S ribosomal protein S13
Genome locationchr09:21353950..21354678
RNA-Seq ExpressionMELO3C005580
SyntenyMELO3C005580
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0070181 - small ribosomal subunit rRNA binding (molecular function)
InterPro domainsIPR012606 - Ribosomal protein S13/S15, N-terminal
IPR023029 - Ribosomal protein S15P


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB2002765.1 hypothetical protein ES319_D11G088100v1 [Gossypium barbadense]1.8e-2889.19Show/hide
Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQDLHLRFQRISIT
        MGRMHSRGKGISASALPYKRTPPSWLKISS DVEDNICKFAKKGLTPSQIGVILRDSHGIAQ L L++ RI  T
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQDLHLRFQRISIT

KAG7036084.1 40S ribosomal protein S13, partial [Cucurbita argyrosperma subsp. argyrosperma]5.7e-27100Show/hide
Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQ
        MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQ
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQ

XP_004147576.1 40S ribosomal protein S13 [Cucumis sativus]5.7e-27100Show/hide
Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQ
        MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQ
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQ

XP_022922396.1 40S ribosomal protein S13-like [Cucurbita moschata]5.7e-27100Show/hide
Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQ
        MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQ
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQ

XP_038874585.1 40S ribosomal protein S13-like [Benincasa hispida]5.7e-27100Show/hide
Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQ
        MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQ
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQ

TrEMBL top hitse value%identityAlignment
A0A0A0KMS8 Ribosomal_S13_N domain-containing protein2.8e-27100Show/hide
Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQ
        MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQ
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQ

A0A1S3ATA6 40S ribosomal protein S13-like2.8e-27100Show/hide
Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQ
        MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQ
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQ

A0A5J5P8C2 Ribosomal_S13_N domain-containing protein8.6e-2989.19Show/hide
Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQDLHLRFQRISIT
        MGRMHSRGKGISASALPYKRTPPSWLKISS DVEDNICKFAKKGLTPSQIGVILRDSHGIAQ L L++ RI  T
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQDLHLRFQRISIT

A0A6J1E411 40S ribosomal protein S13-like2.8e-27100Show/hide
Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQ
        MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQ
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQ

A0A6J1HYG9 40S ribosomal protein S13-like2.8e-27100Show/hide
Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQ
        MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQ
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQ

SwissProt top hitse value%identityAlignment
P46298 40S ribosomal protein S132.5e-2585.48Show/hide
Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQ
        MGR+HS+GKGIS+SALPY+RT PSWLKISS DV++ ICKFAKKGLTPSQIGVILRDSHGIAQ
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQ

P59223 40S ribosomal protein S13-12.8e-2483.87Show/hide
Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQ
        MGRMHSRGKGISASALPYKR+ PSWLK +  DV+++ICKFAKKGLTPSQIGVILRDSHGI Q
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQ

P59224 40S ribosomal protein S13-27.2e-2585.48Show/hide
Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQ
        MGRMHSRGKGISASALPYKR+ PSWLK +S DV+++ICKFAKKGLTPSQIGVILRDSHGI Q
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQ

P62302 40S ribosomal protein S132.4e-2895.16Show/hide
Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQ
        MGRMHSRGKGIS+SALPYKRTPPSWLKISS DVE+NICKFAKKGLTPSQIGVILRDSHGIAQ
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQ

Q69UI1 40S ribosomal protein S13-22.8e-2178.33Show/hide
Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI
        MGRMHSRGKGIS+SALPYKRTPPSWLK +++DVE+ I K AKKG  PSQIGV+LRD HGI
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI

Arabidopsis top hitse value%identityAlignment
AT3G60770.1 Ribosomal protein S13/S152.0e-2583.87Show/hide
Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQ
        MGRMHSRGKGISASALPYKR+ PSWLK +  DV+++ICKFAKKGLTPSQIGVILRDSHGI Q
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQ

AT4G00100.1 ribosomal protein S13A5.1e-2685.48Show/hide
Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQ
        MGRMHSRGKGISASALPYKR+ PSWLK +S DV+++ICKFAKKGLTPSQIGVILRDSHGI Q
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTCGTATGCATAGTCGTGGTAAGGGTATTTCCGCCTCTGCATTGCCCTACAAGAGGACGCCACCAAGTTGGCTCAAGATCTCTTCTACGGATGTTGAAGATAATAT
CTGCAAATTTGCGAAGAAGGGCTTAACCCCTTCTCAAATTGGTGTGATTCTTCGTGATTCTCACGGGATTGCCCAGGACTTGCACCTGAGATTCCAGAGGATCTCTATCA
CTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGTCGTATGCATAGTCGTGGTAAGGGTATTTCCGCCTCTGCATTGCCCTACAAGAGGACGCCACCAAGTTGGCTCAAGATCTCTTCTACGGATGTTGAAGATAATAT
CTGCAAATTTGCGAAGAAGGGCTTAACCCCTTCTCAAATTGGTGTGATTCTTCGTGATTCTCACGGGATTGCCCAGGACTTGCACCTGAGATTCCAGAGGATCTCTATCA
CTTAATCAAGAAAGCAGTTTCCATCCGTAAGCATTTGGAGAGGAACAGGAAGGACAAAGACTCCAAGTTCAGATTGATTCTCGTGGAGAGCAGAATTCACAGACTTGCTC
GTTACTATAAGAAAACCAAGAAGCTTCCACCAGTTTGGAAATAG
Protein sequenceShow/hide protein sequence
MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQDLHLRFQRISIT