; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MELO3C005669 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C005669
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionYqgFc domain-containing protein
Genome locationchr09:22038624..22041699
RNA-Seq ExpressionMELO3C005669
SyntenyMELO3C005669
Gene Ontology termsGO:0000967 - rRNA 5'-end processing (biological process)
InterPro domainsIPR005227 - Putative pre-16S rRNA nuclease
IPR006641 - YqgF/RNase H-like domain
IPR012337 - Ribonuclease H-like superfamily
IPR037027 - YqgF/RNase H-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042764.1 putative pre-16S rRNA nuclease isoform X2 [Cucumis melo var. makuwa]5.9e-8098.08Show/hide
Query:  MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMDLMAEDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFI
        MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMDLMA+DFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFI
Subjt:  MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMDLMAEDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFI

Query:  DDLCKTGKLEGVKYTFWDEGFTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGY
        DDLCKTGKLEGVKYTFWDEGFTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQ +
Subjt:  DDLCKTGKLEGVKYTFWDEGFTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGY

XP_004143911.1 uncharacterized protein LOC101219574 [Cucumis sativus]2.3e-7987.57Show/hide
Query:  MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMDLMAEDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFI
        MKYV+P +LFRDL KRD L+H RLLGLDVGDKYVGLAVSDPDNKIA PLSVLLRKK TMDLMA+DFQK+ISEFSLAGFIVGYPFDRLR N +A+QVKIFI
Subjt:  MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMDLMAEDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFI

Query:  DDLCKTGKLEGVKYTFWDEGFTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGYLDYFNRRPELSET
        DDLCKTGKLEGVKYTFWDE FTSKNVE +IKPLNLLPAVSKT++DKFAAVGILQGYLDYFNRRPEL ET
Subjt:  DDLCKTGKLEGVKYTFWDEGFTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGYLDYFNRRPELSET

XP_008437257.1 PREDICTED: putative pre-16S rRNA nuclease isoform X1 [Cucumis melo]3.7e-90100Show/hide
Query:  MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMDLMAEDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFI
        MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMDLMAEDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFI
Subjt:  MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMDLMAEDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFI

Query:  DDLCKTGKLEGVKYTFWDEGFTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGYLDYFNRRPELSET
        DDLCKTGKLEGVKYTFWDEGFTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGYLDYFNRRPELSET
Subjt:  DDLCKTGKLEGVKYTFWDEGFTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGYLDYFNRRPELSET

XP_008437258.1 PREDICTED: putative pre-16S rRNA nuclease isoform X2 [Cucumis melo]2.7e-80100Show/hide
Query:  MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMDLMAEDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFI
        MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMDLMAEDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFI
Subjt:  MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMDLMAEDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFI

Query:  DDLCKTGKLEGVKYTFWDEGFTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQ
        DDLCKTGKLEGVKYTFWDEGFTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQ
Subjt:  DDLCKTGKLEGVKYTFWDEGFTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQ

XP_038875331.1 putative pre-16S rRNA nuclease isoform X1 [Benincasa hispida]1.7e-7181.55Show/hide
Query:  MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMDLMAEDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFI
        MKYVKP  LFRDLLKR+ L+H RLLGLDVGDKYVGLAVSDPDNKIASPLSVL+RKK  M LMAEDF++LIS+FSLAGFIVGYP  RLR+N +A+QVKIFI
Subjt:  MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMDLMAEDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFI

Query:  DDLCKTGKLEGVKYTFWDEGFTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGYLDYFNRRPELSE
        D+LCKTGKLE VKYTFWDE FTSKNVE +IKPL L P +SKT++DKFAAVGILQGYLDYFNRRPEL E
Subjt:  DDLCKTGKLEGVKYTFWDEGFTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGYLDYFNRRPELSE

TrEMBL top hitse value%identityAlignment
A0A0A0KMK7 YqgFc domain-containing protein1.1e-7987.57Show/hide
Query:  MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMDLMAEDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFI
        MKYV+P +LFRDL KRD L+H RLLGLDVGDKYVGLAVSDPDNKIA PLSVLLRKK TMDLMA+DFQK+ISEFSLAGFIVGYPFDRLR N +A+QVKIFI
Subjt:  MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMDLMAEDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFI

Query:  DDLCKTGKLEGVKYTFWDEGFTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGYLDYFNRRPELSET
        DDLCKTGKLEGVKYTFWDE FTSKNVE +IKPLNLLPAVSKT++DKFAAVGILQGYLDYFNRRPEL ET
Subjt:  DDLCKTGKLEGVKYTFWDEGFTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGYLDYFNRRPELSET

A0A1S3ATK5 putative pre-16S rRNA nuclease isoform X21.3e-80100Show/hide
Query:  MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMDLMAEDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFI
        MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMDLMAEDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFI
Subjt:  MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMDLMAEDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFI

Query:  DDLCKTGKLEGVKYTFWDEGFTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQ
        DDLCKTGKLEGVKYTFWDEGFTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQ
Subjt:  DDLCKTGKLEGVKYTFWDEGFTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQ

A0A1S3ATQ4 putative pre-16S rRNA nuclease isoform X11.8e-90100Show/hide
Query:  MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMDLMAEDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFI
        MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMDLMAEDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFI
Subjt:  MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMDLMAEDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFI

Query:  DDLCKTGKLEGVKYTFWDEGFTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGYLDYFNRRPELSET
        DDLCKTGKLEGVKYTFWDEGFTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGYLDYFNRRPELSET
Subjt:  DDLCKTGKLEGVKYTFWDEGFTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGYLDYFNRRPELSET

A0A5A7THE9 Putative pre-16S rRNA nuclease isoform X22.9e-8098.08Show/hide
Query:  MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMDLMAEDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFI
        MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMDLMA+DFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFI
Subjt:  MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMDLMAEDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFI

Query:  DDLCKTGKLEGVKYTFWDEGFTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGY
        DDLCKTGKLEGVKYTFWDEGFTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQ +
Subjt:  DDLCKTGKLEGVKYTFWDEGFTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGY

A0A6J1K3L4 uncharacterized protein LOC1114908571.8e-6979.17Show/hide
Query:  MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMDLMAEDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFI
        MKYV+P  LFRDLLK + L+  R LGLDVGDKYVGLAVSDPDNKIASPLSVL RKK  M LMA DFQ+LISE SL+GFIVGYPFD  R+N +A+QVKIFI
Subjt:  MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMDLMAEDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFI

Query:  DDLCKTGKLEGVKYTFWDEGFTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGYLDYFNRRPELSE
        DDLCKTGKLEGVKYTFWDE FTSKNVE +IKPL L P +SKT++DKFAAVGILQGYLD+FNRRPEL E
Subjt:  DDLCKTGKLEGVKYTFWDEGFTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGYLDYFNRRPELSE

SwissProt top hitse value%identityAlignment
A4XKC6 Putative pre-16S rRNA nuclease8.2e-1636.3Show/hide
Query:  RLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMDLMAED----FQKLISEFSLAGFIVGYPFDRLR--KNTEAIQVKIFIDDLC-KTGKLEGVKYT
        R+L LD+G + +G+A+SDP    A P  VL       DL  ED      K+ +E  +   ++GYP  +    K TE +Q    ID++C +  +   V   
Subjt:  RLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMDLMAED----FQKLISEFSLAGFIVGYPFDRLR--KNTEAIQVKIFIDDLC-KTGKLEGVKYT

Query:  FWDEGFTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGYLDYFN
         WDE F++K VE++++  N+     K ++DK AAV ILQGYLD+ N
Subjt:  FWDEGFTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGYLDYFN

B6IN25 Putative pre-16S rRNA nuclease2.9e-1333.78Show/hide
Query:  LKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMDLMAEDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQ-VKIFIDDLCKTGKLEGV
        LK    ++ RL+GLD+G+K +GLAVSDP   +ASP+  + R K T D  A++  + + +  +   +VG P +         Q V+ F   L +  +L G 
Subjt:  LKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMDLMAEDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQ-VKIFIDDLCKTGKLEGV

Query:  --KYTFWDEGFTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGYLD
          +  FWDE  ++  VE+M+   ++       ++DK AA  ILQG LD
Subjt:  --KYTFWDEGFTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGYLD

B9MRK7 Putative pre-16S rRNA nuclease1.4e-1535Show/hide
Query:  RLLGLDVGDKYVGLAVSDPDNKIASP-LSVLLRKKNTMDLMAEDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFIDDLCKTGKLEGVKYTFWDEGF
        R+L LD+G+  VG+A+SDP    A P +++ LR K+    + E+  K+   +++   ++GYP  +L  + +  ++K   +   K G    V+   WDE F
Subjt:  RLLGLDVGDKYVGLAVSDPDNKIASP-LSVLLRKKNTMDLMAEDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFIDDLCKTGKLEGVKYTFWDEGF

Query:  TSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGYLDYFN
        ++K VE++I    L     K ++DK AAV ILQGYLD++N
Subjt:  TSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGYLDYFN

C4Z578 Putative pre-16S rRNA nuclease4.5e-1431.39Show/hide
Query:  RLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNT-MDLMAEDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFIDDLCKTGKLEGVKYTFWDEGF
        R++GLDVG K VG+A+SDP    A P   + RK+N  +       +++ISE+ +   +VGYP  +   +T   + K   +      +  G+  T WDE  
Subjt:  RLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNT-MDLMAEDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFIDDLCKTGKLEGVKYTFWDEGF

Query:  TSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGYLD
        T+   +++++   +     KT++D+ AAV IL+GY++
Subjt:  TSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGYLD

Q3AEN4 Putative pre-16S rRNA nuclease3.8e-1332.85Show/hide
Query:  RLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMDLMAEDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFIDDLCKTGKLEGVKYTFWDEGFT
        ++LGLDVGDK +G+A+SD     A  L+V+ R     DL  E+ +K+I    +   ++GYP  R    T   + ++      +  K  G+K  FWDE  +
Subjt:  RLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMDLMAEDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFIDDLCKTGKLEGVKYTFWDEGFT

Query:  SKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGYLDY
        +   E+++   ++     K ++DK AA  IL GYL+Y
Subjt:  SKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGYLDY

Arabidopsis top hitse value%identityAlignment
AT3G52905.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.1e-5161.11Show/hide
Query:  MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMDLMAEDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFI
        MKYVKP  L  + LK       R LGLDVGDKYVGLA+SDP N +ASPLSVLLRKK+ +DLMA DFQ L+  FS++G +VGYPF +L    + + V +FI
Subjt:  MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMDLMAEDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFI

Query:  DDLCKTGKLEGVKYTFWDEGFTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGYLDYFNR
        ++L KT KL+ VKYT+WDE  +SK VE M+KPLNL P   KTMLDK AAV ILQ YLDY NR
Subjt:  DDLCKTGKLEGVKYTFWDEGFTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGYLDYFNR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGTATGTGAAGCCGTCGATACTTTTTCGTGATTTGTTGAAGAGAGATGAACTTAAACATAGCCGTTTGCTTGGTTTGGATGTTGGTGATAAGTATGTTGGTTTAGC
CGTATCTGACCCAGATAATAAAATCGCTTCCCCTCTTAGTGTTTTGTTAAGGAAGAAGAACACAATGGATTTGATGGCTGAGGATTTTCAGAAATTGATCTCTGAATTTT
CCCTGGCGGGGTTCATTGTTGGGTACCCTTTCGATAGACTACGGAAAAACACGGAAGCTATCCAAGTGAAAATCTTCATCGATGACCTTTGCAAAACTGGAAAACTTGAA
GGCGTAAAATATACTTTTTGGGATGAGGGCTTTACATCAAAGAATGTGGAACAAATGATAAAGCCATTAAACCTGCTCCCCGCTGTGTCAAAGACAATGCTGGACAAATT
TGCTGCTGTTGGAATACTTCAGGGTTACTTGGATTATTTTAACAGAAGACCGGAATTGAGCGAGACGTAG
mRNA sequenceShow/hide mRNA sequence
AATCAAAATTGTGATTTCTTCGAGCAGTTAATCGAACCGAGGGATCGGAAGGATTCGGGCTTCATCGAGTCTTGTGTCACATTCGATTGCGAATGAGTCTGATTGTGCAG
CACCGATTGTACGTTTTGATCCTCAAAGGCGCGAAGCTGATAATGGTTTGTATGAATTAAATAGAAATACAAGATGAAGTATGTGAAGCCGTCGATACTTTTTCGTGATT
TGTTGAAGAGAGATGAACTTAAACATAGCCGTTTGCTTGGTTTGGATGTTGGTGATAAGTATGTTGGTTTAGCCGTATCTGACCCAGATAATAAAATCGCTTCCCCTCTT
AGTGTTTTGTTAAGGAAGAAGAACACAATGGATTTGATGGCTGAGGATTTTCAGAAATTGATCTCTGAATTTTCCCTGGCGGGGTTCATTGTTGGGTACCCTTTCGATAG
ACTACGGAAAAACACGGAAGCTATCCAAGTGAAAATCTTCATCGATGACCTTTGCAAAACTGGAAAACTTGAAGGCGTAAAATATACTTTTTGGGATGAGGGCTTTACAT
CAAAGAATGTGGAACAAATGATAAAGCCATTAAACCTGCTCCCCGCTGTGTCAAAGACAATGCTGGACAAATTTGCTGCTGTTGGAATACTTCAGGGTTACTTGGATTAT
TTTAACAGAAGACCGGAATTGAGCGAGACGTAGAGTAATGTGGACTATATGGGATCAGACATCGATGCTCCCTTCTTAGTAGAGGATGGAACATTTTGTTTTGAAGCTCT
CGGTTCTGAACTGGCGATGGATAGGCATTGATGAATTGATATTATTGTCAATTTTATCTTTAAAGGGTGAATTATCTGCTCACAGTCGACTAATCAGCTAATGGGGTTCC
TTTTATGTAGACTTTTTCCTGGGGGAATTCTATCGAGTGCTTGTTTCCATGTTTGTTTATTTCTAAATTATTGCTAATGACAACAATTGTTCCGTATAGTTTGTCTATAT
TACAAATCAACCTCTTGTTTTAAAAATGGCTTCAATTGTTTTTATGTTTGTGAATGTGCTGAATGGTTAATTTATTGATCAATGACATATTTTATGTTAGTTG
Protein sequenceShow/hide protein sequence
MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMDLMAEDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFIDDLCKTGKLE
GVKYTFWDEGFTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGYLDYFNRRPELSET