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MELO3C006062 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C006062
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionArabinogalactan protein 20
Genome locationchr06:825502..826210
RNA-Seq ExpressionMELO3C006062
SyntenyMELO3C006062
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009424 - Arabinogalactan protein 16/20/22/41


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK17643.1 Arabinogalactan protein 20 [Cucumis melo var. makuwa]2.5e-2396.92Show/hide
Query:  MASSNPTTRAFKALFTIFSLIFFILSPLVDAAAPSPAPAPAPASDGTSIDQGIAYVLMLVALVLT
        MASSNPTTRAFKALFTIFSLIFFILSPLVDAAAP+PAPAPAP+SDGTSIDQGIAYVLMLVALVLT
Subjt:  MASSNPTTRAFKALFTIFSLIFFILSPLVDAAAPSPAPAPAPASDGTSIDQGIAYVLMLVALVLT

XP_022924337.1 arabinogalactan peptide 16-like [Cucurbita moschata]1.9e-2380.25Show/hide
Query:  MASSNPTTRAFKALFTIFSLIFFILSPLVDA--AAPSPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASFLQFF
        MASSN T+RAF  LFT F+LI FILSPLVDA  + P+PAPAPAPASDGTSIDQG+AYVLMLVALVLTYLIHPLDAS   FF
Subjt:  MASSNPTTRAFKALFTIFSLIFFILSPLVDA--AAPSPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASFLQFF

XP_022979386.1 arabinogalactan peptide 20-like [Cucurbita maxima]4.3e-2380.25Show/hide
Query:  MASSNPTTRAFKALFTIFSLIFFILSPLVDA--AAPSPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASFLQFF
        MASSN T RAF  LFT F+LI FILSPL+DA  + PSPAPAPAPASDGTSIDQG+AYVLMLVALVLTYLIHPLDAS   FF
Subjt:  MASSNPTTRAFKALFTIFSLIFFILSPLVDA--AAPSPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASFLQFF

XP_023528757.1 arabinogalactan peptide 16-like [Cucurbita pepo subsp. pepo]1.9e-2381.01Show/hide
Query:  MASSNPTTRAFKALFTIFSLIFFILSPLVDAAAPSPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASFLQFF
        MASSN T+RAF  LFT F+LI FILSPLVDA +  PAPAPAPASDGTSIDQG+AYVLMLVALVLTYLIHPLDAS   FF
Subjt:  MASSNPTTRAFKALFTIFSLIFFILSPLVDAAAPSPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASFLQFF

XP_038905636.1 arabinogalactan protein 41-like [Benincasa hispida]3.3e-2383.54Show/hide
Query:  MASSNPTTRAFKALFTIFSLIFFILSPLVDAAAPSPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASFLQFF
        M SSN T+RAF  LFT F+LIFFILSPLVDAA   PAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDAS   FF
Subjt:  MASSNPTTRAFKALFTIFSLIFFILSPLVDAAAPSPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASFLQFF

TrEMBL top hitse value%identityAlignment
A0A0A0L7A0 Uncharacterized protein3.5e-2382.28Show/hide
Query:  MASSNPTTRAFKALFTIFSLIFFILSPLVDAAAPSPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASFLQFF
        M S N T+RAFKALFT FSLIFFILSPLVDA   +PAPAPAP+SDGTSIDQGIAYVLML+ALVLTYLIHPLDAS   FF
Subjt:  MASSNPTTRAFKALFTIFSLIFFILSPLVDAAAPSPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASFLQFF

A0A5D3D0D1 Arabinogalactan protein 201.2e-2396.92Show/hide
Query:  MASSNPTTRAFKALFTIFSLIFFILSPLVDAAAPSPAPAPAPASDGTSIDQGIAYVLMLVALVLT
        MASSNPTTRAFKALFTIFSLIFFILSPLVDAAAP+PAPAPAP+SDGTSIDQGIAYVLMLVALVLT
Subjt:  MASSNPTTRAFKALFTIFSLIFFILSPLVDAAAPSPAPAPAPASDGTSIDQGIAYVLMLVALVLT

A0A6J1D1D7 arabinogalactan peptide 20-like3.5e-2379.75Show/hide
Query:  MASSNPTTRAFKALFTIFSLIFFILSPLVDAAAPSPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASFLQFF
        MASS  T+RAF +LFT F+LIFFI+SPLVDA + +PAPAPAPASDGTSIDQGIAYVLML+ALVLTYLIHPLDAS   FF
Subjt:  MASSNPTTRAFKALFTIFSLIFFILSPLVDAAAPSPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASFLQFF

A0A6J1E8M6 arabinogalactan peptide 16-like9.3e-2480.25Show/hide
Query:  MASSNPTTRAFKALFTIFSLIFFILSPLVDA--AAPSPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASFLQFF
        MASSN T+RAF  LFT F+LI FILSPLVDA  + P+PAPAPAPASDGTSIDQG+AYVLMLVALVLTYLIHPLDAS   FF
Subjt:  MASSNPTTRAFKALFTIFSLIFFILSPLVDA--AAPSPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASFLQFF

A0A6J1IQM6 arabinogalactan peptide 20-like2.1e-2380.25Show/hide
Query:  MASSNPTTRAFKALFTIFSLIFFILSPLVDA--AAPSPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASFLQFF
        MASSN T RAF  LFT F+LI FILSPL+DA  + PSPAPAPAPASDGTSIDQG+AYVLMLVALVLTYLIHPLDAS   FF
Subjt:  MASSNPTTRAFKALFTIFSLIFFILSPLVDA--AAPSPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASFLQFF

SwissProt top hitse value%identityAlignment
O82337 Arabinogalactan protein 161.7e-1464.86Show/hide
Query:  MASSNPTTRAFKALFTIFSLIFFILSPLVDAAAPSPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDAS
        MAS N  T      F +FS +F ++  L  A A S APAPAP SDGTSIDQGIAY+LM+VALVLTYLIHPLDAS
Subjt:  MASSNPTTRAFKALFTIFSLIFFILSPLVDAAAPSPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDAS

Q8L9T8 Arabinogalactan protein 411.6e-1270.97Show/hide
Query:  TRAFKALFTIFSLIFFILSPLVDAAAPSPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIH
        +R F  + TI S+IF IL P+  A A S APAPAP SDGT+IDQGIAYVLMLVALVLTYLIH
Subjt:  TRAFKALFTIFSLIFFILSPLVDAAAPSPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIH

Q9FK16 Arabinogalactan protein 224.8e-0962.5Show/hide
Query:  LFTIFSLIFFILSPLVDAAAPSPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIH
        +  +F +I  IL P+  A + S +PAPAP SDGTSIDQGIAYVLM+VAL LTY IH
Subjt:  LFTIFSLIFFILSPLVDAAAPSPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIH

Q9M373 Arabinogalactan protein 202.2e-1462.16Show/hide
Query:  MASSNPTTRAFKALFTIFSLIFFILSPLVDAAAPSPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDAS
        MAS N       A+  +F+ +F ++SP   A A S APAP+P SDGTSIDQGIAY+LM+VALVLTYLIHPLDAS
Subjt:  MASSNPTTRAFKALFTIFSLIFFILSPLVDAAAPSPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDAS

Arabidopsis top hitse value%identityAlignment
AT2G46330.1 arabinogalactan protein 161.2e-1564.86Show/hide
Query:  MASSNPTTRAFKALFTIFSLIFFILSPLVDAAAPSPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDAS
        MAS N  T      F +FS +F ++  L  A A S APAPAP SDGTSIDQGIAY+LM+VALVLTYLIHPLDAS
Subjt:  MASSNPTTRAFKALFTIFSLIFFILSPLVDAAAPSPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDAS

AT3G61640.1 arabinogalactan protein 201.6e-1562.16Show/hide
Query:  MASSNPTTRAFKALFTIFSLIFFILSPLVDAAAPSPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDAS
        MAS N       A+  +F+ +F ++SP   A A S APAP+P SDGTSIDQGIAY+LM+VALVLTYLIHPLDAS
Subjt:  MASSNPTTRAFKALFTIFSLIFFILSPLVDAAAPSPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDAS

AT5G24105.1 arabinogalactan protein 411.1e-1370.97Show/hide
Query:  TRAFKALFTIFSLIFFILSPLVDAAAPSPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIH
        +R F  + TI S+IF IL P+  A A S APAPAP SDGT+IDQGIAYVLMLVALVLTYLIH
Subjt:  TRAFKALFTIFSLIFFILSPLVDAAAPSPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIH

AT5G53250.1 arabinogalactan protein 223.4e-1062.5Show/hide
Query:  LFTIFSLIFFILSPLVDAAAPSPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIH
        +  +F +I  IL P+  A + S +PAPAP SDGTSIDQGIAYVLM+VAL LTY IH
Subjt:  LFTIFSLIFFILSPLVDAAAPSPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCTTCCAATCCTACTACTAGGGCTTTCAAAGCTCTCTTCACCATCTTCTCTCTCATCTTCTTCATTCTTTCTCCACTCGTTGACGCCGCAGCACCTTCT
CCCGCTCCCGCTCCCGCTCCCGCTAGCGACGGGACCTCCATTGATCAGGGGATTGCGTACGTTCTGATGCTAGTGGCGTTGGTTCTCACGTATCTAATTCACCCT
CTCGATGCATCTTTCTTACAATTTTTTTCTGAATTGAATTGA
mRNA sequenceShow/hide mRNA sequence
ATATAAAAAACGGGAATCGCCACATTATCCTCCGCCCCACTACTCTCCTCTCCTTCTTCAAACCATTTGGATTTTGATCAGTGCTTCCACACAAATTCCCCTCCT
TTTGGAGAAGGAGAATTCGACCATCCATCAATGGCGTCTTCCAATCCTACTACTAGGGCTTTCAAAGCTCTCTTCACCATCTTCTCTCTCATCTTCTTCATTCTT
TCTCCACTCGTTGACGCCGCAGCACCTTCTCCCGCTCCCGCTCCCGCTCCCGCTAGCGACGGGACCTCCATTGATCAGGGGATTGCGTACGTTCTGATGCTAGTG
GCGTTGGTTCTCACGTATCTAATTCACCCTCTCGATGCATCTTTCTTACAATTTTTTTCTGAATTGAATTGAATTCTTCTTCCTAGGATTGTAGCAATGTAGGCG
TTGTTTGTGGACGTTTGAGAAGGAACGAGACCCATTTTTTCTTCTCTCTTTTTGTGATAAAATCAAAAGTGTATATTTGGGTTCCACAGATTTTGATCAATTGCT
CCATTTAATTCATTGTTTATTCGGTTAC
Protein sequenceShow/hide protein sequence
MASSNPTTRAFKALFTIFSLIFFILSPLVDAAAPSPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASFLQFFSELN