; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MELO3C006513 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C006513
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
Descriptionprotein RDM1
Genome locationchr06:3787901..3789945
RNA-Seq ExpressionMELO3C006513
SyntenyMELO3C006513
Gene Ontology termsGO:0044030 - regulation of DNA methylation (biological process)
GO:0000419 - RNA polymerase V complex (cellular component)
InterPro domainsIPR015270 - Protein RDM1, plant
IPR036319 - RDM1 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0049342.1 protein RDM1 [Cucumis melo var. makuwa]6.7e-9599.43Show/hide
Query:  MKRPMPWNEQVDVISSGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVDVISSGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
        Y+TNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
Subjt:  YLTNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
XP_004134127.1 protein RDM1 [Cucumis sativus]1.5e-9498.28Show/hide
Query:  MKRPMPWNEQVDVISSGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVD+ISSGESSSSDSEAA+QNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
        YLTNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMH+AYVDSIFPQL
Subjt:  YLTNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
XP_008438640.1 PREDICTED: protein RDM1 [Cucumis melo]4.0e-95100Show/hide
Query:  MKRPMPWNEQVDVISSGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVDVISSGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
        YLTNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
Subjt:  YLTNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
XP_022979547.1 protein RDM1-like [Cucurbita maxima]5.3e-9295.98Show/hide
Query:  MKRPMPWNEQVDVISSGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVDVISSGESSSSDSE  VQNDG+EFKPSLDDFKIPAKEMT+EGML+KRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
        YLTNILLKQWDQLR GS DEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
Subjt:  YLTNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
XP_038877941.1 protein RDM1 [Benincasa hispida]2.4e-9296.55Show/hide
Query:  MKRPMPWNEQVDVISSGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVDVISSGESSSSDSE  VQNDG+EFKPSLDDFKIPAKEMTSEGML+KRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
        YLTNILLKQWDQLR GS DEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
Subjt:  YLTNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
TrEMBL top hitse value%identityAlignment
A0A0A0L8M0 Uncharacterized protein7.3e-9598.28Show/hide
Query:  MKRPMPWNEQVDVISSGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVD+ISSGESSSSDSEAA+QNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
        YLTNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMH+AYVDSIFPQL
Subjt:  YLTNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
A0A1S3AWI8 protein RDM11.9e-95100Show/hide
Query:  MKRPMPWNEQVDVISSGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVDVISSGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
        YLTNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
Subjt:  YLTNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
A0A5D3D0B3 Protein RDM13.3e-9599.43Show/hide
Query:  MKRPMPWNEQVDVISSGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVDVISSGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
        Y+TNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
Subjt:  YLTNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
A0A6J1GV10 protein RDM14.4e-9295.4Show/hide
Query:  MKRPMPWNEQVDVISSGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVDVISSGESSSSDSE  VQNDG+EFKPS+DDFKIPAKEMT+EGML+KRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
        YLTNILLKQWDQLR GS DEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
Subjt:  YLTNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
A0A6J1INZ9 protein RDM1-like2.6e-9295.98Show/hide
Query:  MKRPMPWNEQVDVISSGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVDVISSGESSSSDSE  VQNDG+EFKPSLDDFKIPAKEMT+EGML+KRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
        YLTNILLKQWDQLR GS DEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
Subjt:  YLTNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
SwissProt top hitse value%identityAlignment
Q9LUJ3 Protein RDM11.9e-4756.33Show/hide
Query:  SGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRL
        SG+S SSD +A + +DG+             +++  EG L++RAEMYQ+YMKQ+ IP  RGS+IPFT+W+GL  S+KQLYGQPLHYLTN+LL++WDQ R 
Subjt:  SGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRL

Query:  GSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQ
        G+  E + LD++IHP+KAEAT+WLVEEIHR T SH H+A LW SDPM+ +++D IFP+
Subjt:  GSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQ
Arabidopsis top hitse value%identityAlignment
AT3G22680.1 RNA-DIRECTED DNA METHYLATION 11.3e-4856.33Show/hide
Query:  SGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRL
        SG+S SSD +A + +DG+             +++  EG L++RAEMYQ+YMKQ+ IP  RGS+IPFT+W+GL  S+KQLYGQPLHYLTN+LL++WDQ R 
Subjt:  SGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRL

Query:  GSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQ
        G+  E + LD++IHP+KAEAT+WLVEEIHR T SH H+A LW SDPM+ +++D IFP+
Subjt:  GSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQ

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAGGCCAATGCCCTGGAATGAACAAGTAGATGTTATATCATCAGGTGAATCTTCTTCCTCTGATTCAGAAGCAGCAGTACAAAATGATGGATATGAGTTC
AAGCCTTCCCTAGACGATTTCAAAATCCCTGCCAAAGAAATGACATCTGAAGGTATGTTGATGAAAAGGGCGGAAATGTATCAAGAATACATGAAACAGATCCAA
ATCCCAGCACAACGTGGTTCTGTGATACCATTTACAACTTGGATGGGTTTAGGCAAATCTATAAAGCAACTTTATGGCCAACCTTTGCATTACTTGACTAACATT
CTACTCAAACAATGGGATCAATTACGGTTAGGAAGTGCGGATGAATATAAGCCATTGGATACTGTAATTCATCCGAGTAAAGCTGAAGCAACTGTATGGCTGGTT
GAAGAGATTCATAGGCGCACCTCATCACATCATCATGTTGCTAAACTCTGGTTATCAGACCCGATGCACGAAGCGTACGTTGACTCCATTTTCCCCCAACTATGA
mRNA sequenceShow/hide mRNA sequence
TATGTAGGTCTGCCATTTTCTTTTGAGTAAATCAAACAAAGAATGTGAATGAGATGGATAATTGGAGATGAAAGACTTTGTGATCGGCGGTTCTGCCTTTCGGGA
ATTATTGAACCGGCCATTTGAACCAATCGTAAACTCTCTCTGATCTCCCCTCGCGCAAAATCAAAACGCCGCAAGACTCAAAACTTTGTGTCTCAAAATTCGAAC
TTGTTGAATTACTGAGCTCCACTGGTTATTCGTCCTGAAACCCACATCGACGAACAGCTTCGGCTTTACGATTCAACCCTAGAAGAATCACATAATTTACAAAAT
GAAGAGGCCAATGCCCTGGAATGAACAAGTAGATGTTATATCATCAGGTGAATCTTCTTCCTCTGATTCAGAAGCAGCAGTACAAAATGATGGATATGAGTTCAA
GCCTTCCCTAGACGATTTCAAAATCCCTGCCAAAGAAATGACATCTGAAGGTATGTTGATGAAAAGGGCGGAAATGTATCAAGAATACATGAAACAGATCCAAAT
CCCAGCACAACGTGGTTCTGTGATACCATTTACAACTTGGATGGGTTTAGGCAAATCTATAAAGCAACTTTATGGCCAACCTTTGCATTACTTGACTAACATTCT
ACTCAAACAATGGGATCAATTACGGTTAGGAAGTGCGGATGAATATAAGCCATTGGATACTGTAATTCATCCGAGTAAAGCTGAAGCAACTGTATGGCTGGTTGA
AGAGATTCATAGGCGCACCTCATCACATCATCATGTTGCTAAACTCTGGTTATCAGACCCGATGCACGAAGCGTACGTTGACTCCATTTTCCCCCAACTATGAAG
GCTGCTTTCAGTTTTGTTCTGCTCTGTGTTGATATTATAACATTTTCTAGAAGGCTAACATGTCAGTGACAATGTGAATTGTAATAGAAACAGCATAGTTCTTTC
GTCACACTGCACTTCACTATGAAGAAGCTCGAGCATTGCTTCTTCTGTCCATTGTTGCCATCTGTCTGTTCACTAGTTGACTGCATTTACTTTTGTAGCAAAGAA
CGAATGTAAATCAATATTGGAGATGCATATTTATCTTACACTT
Protein sequenceShow/hide protein sequence
MKRPMPWNEQVDVISSGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNI
LLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL