; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MELO3C006826 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C006826
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
Descriptionprotein LOW PSII ACCUMULATION 2, chloroplastic
Genome locationchr06:6400612..6403013
RNA-Seq ExpressionMELO3C006826
SyntenyMELO3C006826
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR038789 - Protein LOW PSII ACCUMULATION 2 like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0067684.1 protein LOW PSII ACCUMULATION 2 [Cucumis melo var. makuwa]1.4e-9998.99Show/hide
Query:  MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSSKPSTSSPQGFGSSSPQSTSTSKSTPKSVKQKGKRQRASII
        MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSSKP TSS QGFGSSSPQSTSTSKSTPKSVKQKGKRQRASII
Subjt:  MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSSKPSTSSPQGFGSSSPQSTSTSKSTPKSVKQKGKRQRASII

Query:  RRSPVEKPVFVGEVDEQVAKEQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
        RRSPVEKPVFVGEVDEQVAKEQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
Subjt:  RRSPVEKPVFVGEVDEQVAKEQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS

XP_004148133.1 protein LOW PSII ACCUMULATION 2, chloroplastic [Cucumis sativus]1.9e-9392.46Show/hide
Query:  MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSSKPSTSSPQGFGSSSPQSTSTSKSTPKSVKQKGKRQRASII
        MALQILHHSPSSFTK+PYHLPNPSLHFSSKPKFIIKSQNPSES+KPISK+VDDAPIA      TSSPQGFGSSSPQSTSTSKSTPKS+KQKGKRQRASII
Subjt:  MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSSKPSTSSPQGFGSSSPQSTSTSKSTPKSVKQKGKRQRASII

Query:  RRSPVEKPVFVGEVDEQVAKEQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
        RRSPVEKPVFVG+VDEQVAKEQ RNESYFLLTWLGLGVVILV+GIVLAASGFLPEEWD+ FVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
Subjt:  RRSPVEKPVFVGEVDEQVAKEQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS

XP_008439106.1 PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Cucumis melo]3.2e-101100Show/hide
Query:  MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSSKPSTSSPQGFGSSSPQSTSTSKSTPKSVKQKGKRQRASII
        MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSSKPSTSSPQGFGSSSPQSTSTSKSTPKSVKQKGKRQRASII
Subjt:  MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSSKPSTSSPQGFGSSSPQSTSTSKSTPKSVKQKGKRQRASII

Query:  RRSPVEKPVFVGEVDEQVAKEQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
        RRSPVEKPVFVGEVDEQVAKEQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
Subjt:  RRSPVEKPVFVGEVDEQVAKEQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS

XP_023554492.1 protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita pepo subsp. pepo]2.9e-7879.8Show/hide
Query:  MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSSKPSTSSPQGFGSSSPQSTSTSKSTPKSV----KQKGKRQR
        MALQI+HHSPSSFT+KPYHLP   LHF SK KFIIKSQNPSESEKPISK VDDAP+       TSS QGFGS S QST++SKS+PK+     KQKGKRQR
Subjt:  MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSSKPSTSSPQGFGSSSPQSTSTSKSTPKSV----KQKGKRQR

Query:  ASIIRRSPVEKPVFVGEVDEQVAKEQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKD
        ASIIRRSPVEKPVFVGEVDE+  KEQ +NESYFLLTWLGLG VILVEGIVLAASGFLPE+WD+ FVKYLYPSFTPTVSLFVAGTVAYGV KYLQNEK+K 
Subjt:  ASIIRRSPVEKPVFVGEVDEQVAKEQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKD

Query:  EKS
        +KS
Subjt:  EKS

XP_038899637.1 protein LOW PSII ACCUMULATION 2, chloroplastic [Benincasa hispida]1.2e-9291.46Show/hide
Query:  MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSSKPSTSSPQGFGSSSPQSTSTSKSTPKSVKQKGKRQRASII
        MALQILHHSPSSFT+KPYHLPNPSL+F SKPKFII SQNPSESEKPISK VDDAP+ATSSKPS+SSPQGFGSSS QST+TSKS+PK+VKQKGKRQRASII
Subjt:  MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSSKPSTSSPQGFGSSSPQSTSTSKSTPKSVKQKGKRQRASII

Query:  RRSPVEKPVFVGEVDEQVAKEQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
        RRSPVEKPVFVG+VDE+ AKEQSRNESYFLLTWLGLG VILVEGIVLAASGFLPEEWD+ FVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
Subjt:  RRSPVEKPVFVGEVDEQVAKEQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS

TrEMBL top hitse value%identityAlignment
A0A0A0L8E3 Uncharacterized protein9.2e-9492.46Show/hide
Query:  MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSSKPSTSSPQGFGSSSPQSTSTSKSTPKSVKQKGKRQRASII
        MALQILHHSPSSFTK+PYHLPNPSLHFSSKPKFIIKSQNPSES+KPISK+VDDAPIA      TSSPQGFGSSSPQSTSTSKSTPKS+KQKGKRQRASII
Subjt:  MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSSKPSTSSPQGFGSSSPQSTSTSKSTPKSVKQKGKRQRASII

Query:  RRSPVEKPVFVGEVDEQVAKEQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
        RRSPVEKPVFVG+VDEQVAKEQ RNESYFLLTWLGLGVVILV+GIVLAASGFLPEEWD+ FVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
Subjt:  RRSPVEKPVFVGEVDEQVAKEQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS

A0A1S3AXX6 protein LOW PSII ACCUMULATION 2, chloroplastic1.6e-101100Show/hide
Query:  MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSSKPSTSSPQGFGSSSPQSTSTSKSTPKSVKQKGKRQRASII
        MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSSKPSTSSPQGFGSSSPQSTSTSKSTPKSVKQKGKRQRASII
Subjt:  MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSSKPSTSSPQGFGSSSPQSTSTSKSTPKSVKQKGKRQRASII

Query:  RRSPVEKPVFVGEVDEQVAKEQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
        RRSPVEKPVFVGEVDEQVAKEQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
Subjt:  RRSPVEKPVFVGEVDEQVAKEQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS

A0A5A7VJY0 Protein LOW PSII ACCUMULATION 26.6e-10098.99Show/hide
Query:  MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSSKPSTSSPQGFGSSSPQSTSTSKSTPKSVKQKGKRQRASII
        MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSSKP TSS QGFGSSSPQSTSTSKSTPKSVKQKGKRQRASII
Subjt:  MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSSKPSTSSPQGFGSSSPQSTSTSKSTPKSVKQKGKRQRASII

Query:  RRSPVEKPVFVGEVDEQVAKEQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
        RRSPVEKPVFVGEVDEQVAKEQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
Subjt:  RRSPVEKPVFVGEVDEQVAKEQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS

A0A6J1FNA7 protein LOW PSII ACCUMULATION 2, chloroplastic2.4e-7879.8Show/hide
Query:  MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSSKPSTSSPQGFGSSSPQSTSTSKSTPKSV----KQKGKRQR
        MALQI+HHSPSSFT+KPYHLP   LHF SK KFIIKSQNPSESEKPISK VDDAP+       TSS QGFGS S QST++SKS+PK+     KQKGKRQR
Subjt:  MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSSKPSTSSPQGFGSSSPQSTSTSKSTPKSV----KQKGKRQR

Query:  ASIIRRSPVEKPVFVGEVDEQVAKEQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKD
        ASIIRRSPVEKPVFVGEVDE+  KEQ +NESYFLLTWLGLG VILVEGIVLAASGFLPE+WD+ FVKYLYPSFTPTVSLFVAGTVAYGV KYLQNEK+K 
Subjt:  ASIIRRSPVEKPVFVGEVDEQVAKEQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKD

Query:  EKS
        +KS
Subjt:  EKS

A0A6J1IBT8 protein LOW PSII ACCUMULATION 2, chloroplastic2.1e-7778.82Show/hide
Query:  MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSSKPSTSSPQGFGSSSPQSTSTSKSTPKSV----KQKGKRQR
        MALQI+HHSPSSFT+KPYHLP   L+F SKPKFIIKSQ+PSESEKPISK VDDA +       TSS QGFGS S QST++SKS+PK+     KQKGKRQR
Subjt:  MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSSKPSTSSPQGFGSSSPQSTSTSKSTPKSV----KQKGKRQR

Query:  ASIIRRSPVEKPVFVGEVDEQVAKEQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKD
        ASIIRRSPVEKPVFVGEVDE+  KEQ +NESYFLLTWLGLG VILVEGIVLAASGFLPE WD+ FVKYLYPSFTPTVSLFVAGTVAYGV KYLQNEK+K 
Subjt:  ASIIRRSPVEKPVFVGEVDEQVAKEQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKD

Query:  EKS
        +KS
Subjt:  EKS

SwissProt top hitse value%identityAlignment
F4KDA6 Protein LPA21.2e-4255.28Show/hide
Query:  MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSSKPSTSSPQGFGSSSPQSTSTSK-STPKSVKQKGKRQRASI
        MALQI  HSP SF+ +PYHL       +  P+F IK QN S+ E       D     + SK S+SS  GFGS +  S+   K S   S  +KGK +R  +
Subjt:  MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSSKPSTSSPQGFGSSSPQSTSTSK-STPKSVKQKGKRQRASI

Query:  IRRSPVEKPVFVGEVDEQVAKEQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEK
         RR+PVEKPVF+ E     A+EQ +NE+ FLLTWLGLG+VIL+EGI+LAASGFLPEE D+LFVKY+YP FTP+V LFVAGT AYGVLKY+QNEK+K ++
Subjt:  IRRSPVEKPVFVGEVDEQVAKEQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEK

Arabidopsis top hitse value%identityAlignment
AT5G51545.1 low psii accumulation28.6e-4455.28Show/hide
Query:  MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSSKPSTSSPQGFGSSSPQSTSTSK-STPKSVKQKGKRQRASI
        MALQI  HSP SF+ +PYHL       +  P+F IK QN S+ E       D     + SK S+SS  GFGS +  S+   K S   S  +KGK +R  +
Subjt:  MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSSKPSTSSPQGFGSSSPQSTSTSK-STPKSVKQKGKRQRASI

Query:  IRRSPVEKPVFVGEVDEQVAKEQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEK
         RR+PVEKPVF+ E     A+EQ +NE+ FLLTWLGLG+VIL+EGI+LAASGFLPEE D+LFVKY+YP FTP+V LFVAGT AYGVLKY+QNEK+K ++
Subjt:  IRRSPVEKPVFVGEVDEQVAKEQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCTACAAATACTCCATCATTCTCCCTCTTCTTTCACCAAAAAACCCTATCATCTTCCCAACCCATCTCTCCATTTCTCTTCTAAACCTAAATTCATCATC
AAATCTCAGAACCCGTCTGAATCTGAGAAACCCATTTCCAAAATTGTTGATGATGCTCCAATTGCGACTTCCTCCAAGCCATCTACCTCATCGCCTCAAGGTTTC
GGCTCTTCATCGCCTCAATCGACGTCCACGAGCAAATCAACTCCAAAGTCTGTGAAGCAGAAGGGTAAGCGTCAAAGGGCATCCATTATTCGGCGCTCTCCTGTG
GAGAAACCGGTGTTTGTTGGAGAAGTTGATGAACAGGTTGCTAAGGAACAGAGCAGGAACGAGAGCTATTTTCTTCTTACTTGGTTGGGTCTTGGTGTTGTGATT
CTCGTCGAGGGGATTGTGCTTGCAGCATCTGGTTTCTTACCAGAAGAGTGGGACAGGCTCTTCGTCAAATATTTGTATCCTTCCTTCACACCAACCGTCTCTCTG
TTTGTTGCTGGAACTGTTGCATACGGAGTTTTGAAGTATCTTCAGAATGAGAAAATAAAAGATGAAAAATCATAA
mRNA sequenceShow/hide mRNA sequence
AAGGGAACAATAAATTTTGCTAATTCCCAATTGAAGCAAACCTTAACCAAATAAACTGAAAATGGCGCTACAAATACTCCATCATTCTCCCTCTTCTTTCACCAA
AAAACCCTATCATCTTCCCAACCCATCTCTCCATTTCTCTTCTAAACCTAAATTCATCATCAAATCTCAGAACCCGTCTGAATCTGAGAAACCCATTTCCAAAAT
TGTTGATGATGCTCCAATTGCGACTTCCTCCAAGCCATCTACCTCATCGCCTCAAGGTTTCGGCTCTTCATCGCCTCAATCGACGTCCACGAGCAAATCAACTCC
AAAGTCTGTGAAGCAGAAGGGTAAGCGTCAAAGGGCATCCATTATTCGGCGCTCTCCTGTGGAGAAACCGGTGTTTGTTGGAGAAGTTGATGAACAGGTTGCTAA
GGAACAGAGCAGGAACGAGAGCTATTTTCTTCTTACTTGGTTGGGTCTTGGTGTTGTGATTCTCGTCGAGGGGATTGTGCTTGCAGCATCTGGTTTCTTACCAGA
AGAGTGGGACAGGCTCTTCGTCAAATATTTGTATCCTTCCTTCACACCAACCGTCTCTCTGTTTGTTGCTGGAACTGTTGCATACGGAGTTTTGAAGTATCTTCA
GAATGAGAAAATAAAAGATGAAAAATCATAATTTGATCCTTTTTGCGATGCTTTGTATTTGGTGTGTAGACCTGAAAAATCCCAAGTGCCTATAGATCTTGTTTA
TATAAAGTGTCTCATTTTCTGAGAAACTGAGATGAAAATCTTTTGAGCTCAAAAGCAAATAAGATGCTGTTGTTGAATCCTAGGAAACTCTTTCCCATCATTATT
ATTTTTGGGCTTTAATTTATCGACAATAATCTTCTGATAGACCC
Protein sequenceShow/hide protein sequence
MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSSKPSTSSPQGFGSSSPQSTSTSKSTPKSVKQKGKRQRASIIRRSPV
EKPVFVGEVDEQVAKEQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS