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MELO3C008228 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C008228
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionRetrotran_gag_3 domain-containing protein
Genome locationchr03:2150282..2150698
RNA-Seq ExpressionMELO3C008228
SyntenyMELO3C008228
Gene Ontology termsGO:0016020 - membrane (cellular component)
GO:0005488 - binding (molecular function)
InterPro domainsIPR029472 - Retrotransposon Copia-like, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041430.1 Thaumatin-like protein [Cucumis melo var. makuwa]5.1e-1392Show/hide
Query:  TQTTSSSTTELRPLRLQQPNSDHFVFNNRNQTASSSTTEIRPLRLQQLKS
        TQTTSSSTTELRPLRLQQP SD FVFNNRNQTASSSTTEIRPL LQQ KS
Subjt:  TQTTSSSTTELRPLRLQQPNSDHFVFNNRNQTASSSTTEIRPLRLQQLKS
KAA0049700.1 T4.5 [Cucumis melo var. makuwa]1.3e-1162.69Show/hide
Query:  SSSTSKELSSPLFLLTNICNLISIRLDSTNYTLWKFQFEPMLKA--LYGFIDESFPTPPKTISNSTT
        SSS  K+  SP+FLL+NICNLIS+RLDSTN+ LWKFQ   +LKA  LYGFID + P PP+T ++S+T
Subjt:  SSSTSKELSSPLFLLTNICNLISIRLDSTNYTLWKFQFEPMLKA--LYGFIDESFPTPPKTISNSTT
TYK17989.1 uncharacterized protein E5676_scaffold306G002980 [Cucumis melo var. makuwa]1.1e-3179.63Show/hide
Query:  MGTEASFSSSTSKELSSPLFLLTNICNLISIRLDSTNYTLWKFQFEPMLKA--LYGFIDESFPTPPKTISNSTTVSSSTTTQTTSSSTTELR--PLRLQQ
        M TEAS SSSTSKELSSPLFLLTNICNLISIRLDSTNYTLWKFQFEPMLKA  LYGFIDES PTPPKTISN TT SSS TTQTTSSSTTE+   P    Q
Subjt:  MGTEASFSSSTSKELSSPLFLLTNICNLISIRLDSTNYTLWKFQFEPMLKA--LYGFIDESFPTPPKTISNSTTVSSSTTTQTTSSSTTELR--PLRLQQ

Query:  PNSDHFVF
             F+F
Subjt:  PNSDHFVF
XP_008448007.1 PREDICTED: uncharacterized protein LOC103490319 isoform X2 [Cucumis melo]1.3e-1162.69Show/hide
Query:  SSSTSKELSSPLFLLTNICNLISIRLDSTNYTLWKFQFEPMLKA--LYGFIDESFPTPPKTISNSTT
        SSS  K+  SP+FLL+NICNLIS+RLDSTN+ LWKFQ   +LKA  LYGFID + P PP+T ++S+T
Subjt:  SSSTSKELSSPLFLLTNICNLISIRLDSTNYTLWKFQFEPMLKA--LYGFIDESFPTPPKTISNSTT
XP_008448008.1 PREDICTED: uncharacterized protein LOC103490319 isoform X3 [Cucumis melo]1.3e-1162.69Show/hide
Query:  SSSTSKELSSPLFLLTNICNLISIRLDSTNYTLWKFQFEPMLKA--LYGFIDESFPTPPKTISNSTT
        SSS  K+  SP+FLL+NICNLIS+RLDSTN+ LWKFQ   +LKA  LYGFID + P PP+T ++S+T
Subjt:  SSSTSKELSSPLFLLTNICNLISIRLDSTNYTLWKFQFEPMLKA--LYGFIDESFPTPPKTISNSTT
TrEMBL top hitse value%identityAlignment
A0A1S3BI58 uncharacterized protein LOC103490319 isoform X26.1e-1262.69Show/hide
Query:  SSSTSKELSSPLFLLTNICNLISIRLDSTNYTLWKFQFEPMLKA--LYGFIDESFPTPPKTISNSTT
        SSS  K+  SP+FLL+NICNLIS+RLDSTN+ LWKFQ   +LKA  LYGFID + P PP+T ++S+T
Subjt:  SSSTSKELSSPLFLLTNICNLISIRLDSTNYTLWKFQFEPMLKA--LYGFIDESFPTPPKTISNSTT
A0A1S4DWT9 uncharacterized protein LOC103490319 isoform X16.1e-1262.69Show/hide
Query:  SSSTSKELSSPLFLLTNICNLISIRLDSTNYTLWKFQFEPMLKA--LYGFIDESFPTPPKTISNSTT
        SSS  K+  SP+FLL+NICNLIS+RLDSTN+ LWKFQ   +LKA  LYGFID + P PP+T ++S+T
Subjt:  SSSTSKELSSPLFLLTNICNLISIRLDSTNYTLWKFQFEPMLKA--LYGFIDESFPTPPKTISNSTT
A0A5D3CLI6 T4.56.1e-1262.69Show/hide
Query:  SSSTSKELSSPLFLLTNICNLISIRLDSTNYTLWKFQFEPMLKA--LYGFIDESFPTPPKTISNSTT
        SSS  K+  SP+FLL+NICNLIS+RLDSTN+ LWKFQ   +LKA  LYGFID + P PP+T ++S+T
Subjt:  SSSTSKELSSPLFLLTNICNLISIRLDSTNYTLWKFQFEPMLKA--LYGFIDESFPTPPKTISNSTT
A0A5D3D3T6 Retrotran_gag_3 domain-containing protein5.3e-3279.63Show/hide
Query:  MGTEASFSSSTSKELSSPLFLLTNICNLISIRLDSTNYTLWKFQFEPMLKA--LYGFIDESFPTPPKTISNSTTVSSSTTTQTTSSSTTELR--PLRLQQ
        M TEAS SSSTSKELSSPLFLLTNICNLISIRLDSTNYTLWKFQFEPMLKA  LYGFIDES PTPPKTISN TT SSS TTQTTSSSTTE+   P    Q
Subjt:  MGTEASFSSSTSKELSSPLFLLTNICNLISIRLDSTNYTLWKFQFEPMLKA--LYGFIDESFPTPPKTISNSTTVSSSTTTQTTSSSTTELR--PLRLQQ

Query:  PNSDHFVF
             F+F
Subjt:  PNSDHFVF
A0A5D3DL32 Thaumatin-like protein2.5e-1392Show/hide
Query:  TQTTSSSTTELRPLRLQQPNSDHFVFNNRNQTASSSTTEIRPLRLQQLKS
        TQTTSSSTTELRPLRLQQP SD FVFNNRNQTASSSTTEIRPL LQQ KS
Subjt:  TQTTSSSTTELRPLRLQQPNSDHFVFNNRNQTASSSTTEIRPLRLQQLKS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAACCGAAGCAAGTTTTTCTTCTTCAACCTCCAAAGAACTATCATCACCCCTCTTCCTTCTAACAAATATATGTAACCTAATATCCATTCGGCTTGATTCA
ACCAACTACACCCTCTGGAAGTTCCAATTTGAACCTATGCTGAAAGCGTTGTACGGCTTTATTGACGAATCCTTTCCCACACCTCCGAAGACGATTTCAAACTCC
ACAACTGTGAGTTCCTCAACAACTACTCAGACCACTTCGTCCTCAACAACCGAACTCAGACCACTTCGTCTTCAACAACCGAACTCAGACCACTTCGTCTTCAAC
AACCGAAATCAGACCGCTTCGTCTTCAACAACCGAAATCAGACCGCTTCGTCTTCAACAACTGAAATCAGACCACTTCATCTTCAACAACCAAAATCAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGAACCGAAGCAAGTTTTTCTTCTTCAACCTCCAAAGAACTATCATCACCCCTCTTCCTTCTAACAAATATATGTAACCTAATATCCATTCGGCTTGATTCA
ACCAACTACACCCTCTGGAAGTTCCAATTTGAACCTATGCTGAAAGCGTTGTACGGCTTTATTGACGAATCCTTTCCCACACCTCCGAAGACGATTTCAAACTCC
ACAACTGTGAGTTCCTCAACAACTACTCAGACCACTTCGTCCTCAACAACCGAACTCAGACCACTTCGTCTTCAACAACCGAACTCAGACCACTTCGTCTTCAAC
AACCGAAATCAGACCGCTTCGTCTTCAACAACCGAAATCAGACCGCTTCGTCTTCAACAACTGAAATCAGACCACTTCATCTTCAACAACCAAAATCAGTAA
Protein sequenceShow/hide protein sequence
MGTEASFSSSTSKELSSPLFLLTNICNLISIRLDSTNYTLWKFQFEPMLKALYGFIDESFPTPPKTISNSTTVSSSTTTQTTSSSTTELRPLRLQQPNSDHFVFN
NRNQTASSSTTEIRPLRLQQLKSDHFIFNNQNQ