CuGenDBv2

Gene ID	MELO3C008538
Organism	Cucumis melo DHL92 (Melon (DHL92) v4)
Description	Condensin complex subunit 1
Genome location	chr05:12331135..12331328
RNA-Seq Expression	MELO3C008538
Synteny	MELO3C008538
Gene Ontology terms	GO:0007076 - mitotic chromosome condensation (biological process) GO:0010032 - meiotic chromosome condensation (biological process) GO:0051301 - cell division (biological process) GO:0000779 - condensed chromosome, centromeric region (cellular component) GO:0005634 - nucleus (cellular component) GO:0042393 - histone binding (molecular function)
InterPro domains	IPR007673 - Condensin subunit 1 IPR016024 - Armadillo-type fold IPR026971 - Condensin subunit 1/Condensin-2 complex subunit D3 IPR032682 - Condensin complex subunit 1, C-terminal

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0032300.1 condensin complex subunit 1 [Cucumis melo var. makuwa]

1.7e-27

100

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Query:  IAPSDIVRSNCTIALGDLAVCFPNLLEPWTENMYTRLKDPSNSVRKNVVLELSHLIFNDIMKA
        IAPSDIVRSNCTIALGDLAVCFPNLLEPWTENMYTRLKDPSNSVRKNVVLELSHLIFNDIMKA
Subjt:  IAPSDIVRSNCTIALGDLAVCFPNLLEPWTENMYTRLKDPSNSVRKNVVLELSHLIFNDIMKA

KAG6580892.1 Condensin complex subunit 1, partial [Cucurbita argyrosperma subsp. sororia]

2.8e-22

90.16

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Query:  APSDIVRSNCTIALGDLAVCFPNLLEPWTENMYTRLKDPSNSVRKNVVLELSHLIFNDIMK
        APSDIVRSNCTIALGDLAV FPNLLEPWTENMY RLKDPSNSVRKN VL LSHLI ND+MK
Subjt:  APSDIVRSNCTIALGDLAVCFPNLLEPWTENMYTRLKDPSNSVRKNVVLELSHLIFNDIMK

KAG7017649.1 Condensin complex subunit 1 [Cucurbita argyrosperma subsp. argyrosperma]

2.8e-22

90.16

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Query:  APSDIVRSNCTIALGDLAVCFPNLLEPWTENMYTRLKDPSNSVRKNVVLELSHLIFNDIMK
        APSDIVRSNCTIALGDLAV FPNLLEPWTENMY RLKDPSNSVRKN VL LSHLI ND+MK
Subjt:  APSDIVRSNCTIALGDLAVCFPNLLEPWTENMYTRLKDPSNSVRKNVVLELSHLIFNDIMK

XP_004136646.1 condensin complex subunit 1 [Cucumis sativus]

2.8e-22

90.16

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Query:  APSDIVRSNCTIALGDLAVCFPNLLEPWTENMYTRLKDPSNSVRKNVVLELSHLIFNDIMK
        APSDIVRSNCTIALGDLAV FPNLLEPWTENMY RLKDPSNSVRKN VL LSHLI ND+MK
Subjt:  APSDIVRSNCTIALGDLAVCFPNLLEPWTENMYTRLKDPSNSVRKNVVLELSHLIFNDIMK

XP_038904683.1 condensin complex subunit 1 [Benincasa hispida]

2.8e-22

90.16

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Query:  APSDIVRSNCTIALGDLAVCFPNLLEPWTENMYTRLKDPSNSVRKNVVLELSHLIFNDIMK
        APSDIVRSNCTIALGDLAV FPNLLEPWTENMY RLKDPSNSVRKN VL LSHLI ND+MK
Subjt:  APSDIVRSNCTIALGDLAVCFPNLLEPWTENMYTRLKDPSNSVRKNVVLELSHLIFNDIMK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LHG7 Condensin complex subunit 1

1.3e-22

90.16

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Query:  APSDIVRSNCTIALGDLAVCFPNLLEPWTENMYTRLKDPSNSVRKNVVLELSHLIFNDIMK
        APSDIVRSNCTIALGDLAV FPNLLEPWTENMY RLKDPSNSVRKN VL LSHLI ND+MK
Subjt:  APSDIVRSNCTIALGDLAVCFPNLLEPWTENMYTRLKDPSNSVRKNVVLELSHLIFNDIMK

A0A5D3CQP7 Condensin complex subunit 1

8.1e-28

100

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Query:  IAPSDIVRSNCTIALGDLAVCFPNLLEPWTENMYTRLKDPSNSVRKNVVLELSHLIFNDIMKA
        IAPSDIVRSNCTIALGDLAVCFPNLLEPWTENMYTRLKDPSNSVRKNVVLELSHLIFNDIMKA
Subjt:  IAPSDIVRSNCTIALGDLAVCFPNLLEPWTENMYTRLKDPSNSVRKNVVLELSHLIFNDIMKA

A0A6J1DXI0 Condensin complex subunit 1

6.6e-22

88.52

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Query:  APSDIVRSNCTIALGDLAVCFPNLLEPWTENMYTRLKDPSNSVRKNVVLELSHLIFNDIMK
        APSDIVRSNCTIALGDLAV FPNLLEPWTENMY RLKDPS SVRKN VL LSHLI ND+MK
Subjt:  APSDIVRSNCTIALGDLAVCFPNLLEPWTENMYTRLKDPSNSVRKNVVLELSHLIFNDIMK

A0A6J1F3J1 Condensin complex subunit 1

2.3e-22

90.16

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Query:  APSDIVRSNCTIALGDLAVCFPNLLEPWTENMYTRLKDPSNSVRKNVVLELSHLIFNDIMK
        APSDIVRSNCTIALGDLAV FPNLLEPWTENMY RLKDPSNSVRKN VL LSHLI ND+MK
Subjt:  APSDIVRSNCTIALGDLAVCFPNLLEPWTENMYTRLKDPSNSVRKNVVLELSHLIFNDIMK

A0A6J1J8F1 Condensin complex subunit 1

2.3e-22

90.16

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Query:  APSDIVRSNCTIALGDLAVCFPNLLEPWTENMYTRLKDPSNSVRKNVVLELSHLIFNDIMK
        APSDIVRSNCTIALGDLAV FPNLLEPWTENMY RLKDPSNSVRKN VL LSHLI ND+MK
Subjt:  APSDIVRSNCTIALGDLAVCFPNLLEPWTENMYTRLKDPSNSVRKNVVLELSHLIFNDIMK

SwissProt top hits

e value

%identity

Alignment

O94679 Condensin complex subunit 1

1.2e-04

41.18

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Query:  IVRSNCTIALGDLAVCFPNLLEPWTENMYTRLKDPSNSVRKNVVLELSHLI
        I+R+N  I L DL VCF + ++  +E +Y RL D  +SV+K   + L+ LI
Subjt:  IVRSNCTIALGDLAVCFPNLLEPWTENMYTRLKDPSNSVRKNVVLELSHLI

Q06156 Condensin complex subunit 1

1.9e-05

38.18

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Query:  APSDIVRSNCTIALGDLAVCFPNLLEPWTENMYTRLKDPSNSVRKNVVLELSHLI
        +P   +RSN  + LGD+AVCF NL++  T+ +Y RL D +  V++  ++ ++ LI
Subjt:  APSDIVRSNCTIALGDLAVCFPNLLEPWTENMYTRLKDPSNSVRKNVVLELSHLI

Q15021 Condensin complex subunit 1

3.2e-13

52.46

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Query:  APSDIVRSNCTIALGDLAVCFPNLLEPWTENMYTRLKDPSNSVRKNVVLELSHLIFNDIMK
        +P  IVRSN  +A GDLA+ FPNL++PWT ++Y RL+DP+  VRK   L ++HLI  D++K
Subjt:  APSDIVRSNCTIALGDLAVCFPNLLEPWTENMYTRLKDPSNSVRKNVVLELSHLIFNDIMK

Q8K2Z4 Condensin complex subunit 1

3.5e-12

53.57

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Query:  VRSNCTIALGDLAVCFPNLLEPWTENMYTRLKDPSNSVRKNVVLELSHLIFNDIMK
        VRSN  +A GDLA+ FPNL++PWT ++Y RL+DP+  VRK   L ++HLI  D++K
Subjt:  VRSNCTIALGDLAVCFPNLLEPWTENMYTRLKDPSNSVRKNVVLELSHLIFNDIMK

Q9YHY6 Condensin complex subunit 1

4.9e-14

55.74

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Query:  APSDIVRSNCTIALGDLAVCFPNLLEPWTENMYTRLKDPSNSVRKNVVLELSHLIFNDIMK
        +P   VRSN  IALGDL++ FPNL+EPWT N+Y RL+DPS  VRK   + ++HLI  D++K
Subjt:  APSDIVRSNCTIALGDLAVCFPNLLEPWTENMYTRLKDPSNSVRKNVVLELSHLIFNDIMK

Arabidopsis top hits

e value

%identity

Alignment

AT3G57060.1 binding

7.7e-23

78.69

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Query:  APSDIVRSNCTIALGDLAVCFPNLLEPWTENMYTRLKDPSNSVRKNVVLELSHLIFNDIMK
        APS++VRSNCT++LGDLAV FPNLLEPWTENMY RL+D S SVRKN VL LSHLI ND+MK
Subjt:  APSDIVRSNCTIALGDLAVCFPNLLEPWTENMYTRLKDPSNSVRKNVVLELSHLIFNDIMK

AT3G57060.2 binding

7.7e-23

78.69

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Query:  APSDIVRSNCTIALGDLAVCFPNLLEPWTENMYTRLKDPSNSVRKNVVLELSHLIFNDIMK
        APS++VRSNCT++LGDLAV FPNLLEPWTENMY RL+D S SVRKN VL LSHLI ND+MK
Subjt:  APSDIVRSNCTIALGDLAVCFPNLLEPWTENMYTRLKDPSNSVRKNVVLELSHLIFNDIMK

Sequences

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CDS sequence

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ATTGCACCATCAGATATTGTTCGTTCCAATTGTACTATTGCTTTAGGAGATTTGGCAGTTTGTTTCCCTAATCTCTTGGAGCCATGGACCGAGAATATGTATACAAGGTT
GAAGGATCCTTCAAATTCTGTTAGGAAGAATGTTGTATTGGAGCTATCTCATCTCATTTTCAACGATATTATGAAGGCTTGA

mRNA sequence

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AAATTGCACCATCAGATATTGTTCGTTCCAATTGTACTATTGCTTTAGGAGATTTGGCAGTTTGTTTCCCTAATCTCTTGGAGCCATGGACCGAGAATATGTATACAAGG
TTGAAGGATCCTTCAAATTCTGTTAGGAAGAATGTTGTATTGGAGCTATCTCATCTCATTTTCAACGATATTATGAAGGCTTGA

Protein sequence

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IAPSDIVRSNCTIALGDLAVCFPNLLEPWTENMYTRLKDPSNSVRKNVVLELSHLIFNDIMKA

MELO3C008538 (gene) of Melon (DHL92) v4 genome