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MELO3C008748 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C008748
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Genome locationchr01:10464187..10465160
RNA-Seq ExpressionMELO3C008748
SyntenyMELO3C008748
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031678.1 retrotransposon protein [Cucumis melo var. makuwa]8.1e-7778.35Show/hide
Query:  KSHRAAKGFLHKSFSYYDDLFYVFDKDQATGACLETFADVGSNMLNMFNDGVPLDDSHDKDIPTMYSQGVHMSLDEMFGTRTGQASGRRNCSSGSKRKRG
        +SH AAKG LHKSF YYDDL YVF  D ATGA  ETFAD GSN+ NMFNDGVPL DSH++DI T+YSQGVHMSLDE+FG R GQAS RRN SSGSKRKRG
Subjt:  KSHRAAKGFLHKSFSYYDDLFYVFDKDQATGACLETFADVGSNMLNMFNDGVPLDDSHDKDIPTMYSQGVHMSLDEMFGTRTGQASGRRNCSSGSKRKRG

Query:  SQHYETVKVIRSVMEFRNDQLKAIVDWSKEKRATEVELHAKVVKQLQDIPELRSQDRTKLIQILFRSVEGIEGFLSIPTELKLEYCNVLLENNV
        S+HYE V+VI S  EF NDQLK I DW KEKRATEVEL  +VVKQLQDIP+LRSQDR KL+QILFRSVE IEGFLSIPT+LKLEYCN+LLENNV
Subjt:  SQHYETVKVIRSVMEFRNDQLKAIVDWSKEKRATEVELHAKVVKQLQDIPELRSQDRTKLIQILFRSVEGIEGFLSIPTELKLEYCNVLLENNV

KAA0033290.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]9.0e-7678.72Show/hide
Query:  AAKGFLHKSFSYYDDLFYVFDKDQATGACLETFADVGSNMLNMFNDGVPLDDSHDKDIPTMYSQGVHMSLDEMFGTRTGQASGRRNCSSGSKRKRGSQHY
        A K  LHKSF YYDDLFYVF KD+AT A  ETFADVGSN+ NMFN  VPLDDSHD+DIP MYSQGVHMS DEMFG R GQAS R+NCSSGSKRK+GS+HY
Subjt:  AAKGFLHKSFSYYDDLFYVFDKDQATGACLETFADVGSNMLNMFNDGVPLDDSHDKDIPTMYSQGVHMSLDEMFGTRTGQASGRRNCSSGSKRKRGSQHY

Query:  ETVKVIRSVMEFRNDQLKAIVDWSKEKRATEVELHAKVVKQLQDIPELRSQDRTKLIQILFRSVEGIEGFLSIPTELKLEYCNVLLEN
        ETV+VI+S +EF NDQLKAI +W KEKRATEVEL A+V+KQLQDIPEL+S+DR KLIQILFRSVE IEGFLSIPTE KLEYCN+LL+N
Subjt:  ETVKVIRSVMEFRNDQLKAIVDWSKEKRATEVELHAKVVKQLQDIPELRSQDRTKLIQILFRSVEGIEGFLSIPTELKLEYCNVLLEN

KAA0042340.1 retrotransposon protein [Cucumis melo var. makuwa]3.3e-7878.17Show/hide
Query:  FDSWVKSHRAAKGFLHKSFSYYDDLFYVFDKDQATGACLETFADVGSNMLNMFNDGVPLDDSHDKDIPTMYSQGVHMSLDEMFGTRTGQASGRRNCSSGS
        F  W++SH   KG L+KSF YYDD+ YVF KDQAT A  ETFADVGSN+ NMFNDGVPL DSH +DIPTMYSQGV MSLDEMFGTR GQAS RRNCSS S
Subjt:  FDSWVKSHRAAKGFLHKSFSYYDDLFYVFDKDQATGACLETFADVGSNMLNMFNDGVPLDDSHDKDIPTMYSQGVHMSLDEMFGTRTGQASGRRNCSSGS

Query:  KRKRGSQHYETVKVIRSVMEFRNDQLKAIVDWSKEKRATEVELHAKVVKQLQDIPELRSQDRTKLIQILFRSVEGIEGFLSIPTELKLEYCNVLLEN
        KRK+GSQHYETV+VIRS M+F NDQLKAI DW KEKRA +VEL A VVKQLQDIP+L+++DR K+IQILF SVEGIEGFLSIPTELKLEYCNVLLEN
Subjt:  KRKRGSQHYETVKVIRSVMEFRNDQLKAIVDWSKEKRATEVELHAKVVKQLQDIPELRSQDRTKLIQILFRSVEGIEGFLSIPTELKLEYCNVLLEN

KAA0062747.1 retrotransposon protein [Cucumis melo var. makuwa]1.1e-7668.16Show/hide
Query:  MRESSSSCFGWNEEFQCIVVKGELFDSWVKSHRAAKGFLHKSFSYYDDLFYVFDKDQATGACLETFADVGSNMLNMFNDGVPLDDSHDKDIPTMYSQGVH
        MR  S S FGWNEEFQCI+ + +LFDSWVKSH A KG LHKSF YYDDL YVF KD+ATGA  ETF DVGSN+ NMFND +PL DSHD+DIPTMYSQGVH
Subjt:  MRESSSSCFGWNEEFQCIVVKGELFDSWVKSHRAAKGFLHKSFSYYDDLFYVFDKDQATGACLETFADVGSNMLNMFNDGVPLDDSHDKDIPTMYSQGVH

Query:  MSLDEMFGTRTGQASGRRNCSSGSKRKRGSQHYETVKVIRSVMEFRNDQLKAIVDWSKEKRATEVELHAKVVKQLQDIPELRSQDRTKLIQILFRSVEGI
        +S DEMFG R                          +VIRSVMEF N+QLKAI DW+KEKRA E+E+ A+VVKQLQDIPELRSQ RTKL+QILFRS+E I
Subjt:  MSLDEMFGTRTGQASGRRNCSSGSKRKRGSQHYETVKVIRSVMEFRNDQLKAIVDWSKEKRATEVELHAKVVKQLQDIPELRSQDRTKLIQILFRSVEGI

Query:  EGFLSIPTELKLEYCNVLLENNV
         GFLSIPTELKLEYCN+LL+NNV
Subjt:  EGFLSIPTELKLEYCNVLLENNV

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]6.8e-9277.58Show/hide
Query:  MRESSSSCFGWNEEFQCIVVKGELFDSWVKSHRAAKGFLHKSFSYYDDLFYVFDKDQATGACLETFADVGSNMLNMFNDGVPLDDSHDKDIPTMYSQGVH
        MR  S S FGWNEEFQCI+ + +LFDSW+KSH AAKG LHKSF YYDDL YVF KD+ATGA  ETF +VGSN+ NMFND +PL DSHD+DIPTMYSQGVH
Subjt:  MRESSSSCFGWNEEFQCIVVKGELFDSWVKSHRAAKGFLHKSFSYYDDLFYVFDKDQATGACLETFADVGSNMLNMFNDGVPLDDSHDKDIPTMYSQGVH

Query:  MSLDEMFGTRTGQASGRRNCSSGSKRKRGSQHYETVKVIRSVMEFRNDQLKAIVDWSKEKRATEVELHAKVVKQLQDIPELRSQDRTKLIQILFRSVEGI
        MS DEMFG R GQAS RRNCSS SKRKRGS+ YETV+VIRSVMEF N+QLKAI DW KEKRA EVE+ A+VVKQLQDIP+LRSQDR KL+QILFRS+E I
Subjt:  MSLDEMFGTRTGQASGRRNCSSGSKRKRGSQHYETVKVIRSVMEFRNDQLKAIVDWSKEKRATEVELHAKVVKQLQDIPELRSQDRTKLIQILFRSVEGI

Query:  EGFLSIPTELKLEYCNVLLENNV
        EGFLSIPTELKLEYCN+LL+N V
Subjt:  EGFLSIPTELKLEYCNVLLENNV

TrEMBL top hitse value%identityAlignment
A0A1S3B4L3 uncharacterized protein LOC1034859533.3e-9277.58Show/hide
Query:  MRESSSSCFGWNEEFQCIVVKGELFDSWVKSHRAAKGFLHKSFSYYDDLFYVFDKDQATGACLETFADVGSNMLNMFNDGVPLDDSHDKDIPTMYSQGVH
        MR  S S FGWNEEFQCI+ + +LFDSW+KSH AAKG LHKSF YYDDL YVF KD+ATGA  ETF +VGSN+ NMFND +PL DSHD+DIPTMYSQGVH
Subjt:  MRESSSSCFGWNEEFQCIVVKGELFDSWVKSHRAAKGFLHKSFSYYDDLFYVFDKDQATGACLETFADVGSNMLNMFNDGVPLDDSHDKDIPTMYSQGVH

Query:  MSLDEMFGTRTGQASGRRNCSSGSKRKRGSQHYETVKVIRSVMEFRNDQLKAIVDWSKEKRATEVELHAKVVKQLQDIPELRSQDRTKLIQILFRSVEGI
        MS DEMFG R GQAS RRNCSS SKRKRGS+ YETV+VIRSVMEF N+QLKAI DW KEKRA EVE+ A+VVKQLQDIP+LRSQDR KL+QILFRS+E I
Subjt:  MSLDEMFGTRTGQASGRRNCSSGSKRKRGSQHYETVKVIRSVMEFRNDQLKAIVDWSKEKRATEVELHAKVVKQLQDIPELRSQDRTKLIQILFRSVEGI

Query:  EGFLSIPTELKLEYCNVLLENNV
        EGFLSIPTELKLEYCN+LL+N V
Subjt:  EGFLSIPTELKLEYCNVLLENNV

A0A5A7U0H7 Retrotransposon protein3.3e-9277.58Show/hide
Query:  MRESSSSCFGWNEEFQCIVVKGELFDSWVKSHRAAKGFLHKSFSYYDDLFYVFDKDQATGACLETFADVGSNMLNMFNDGVPLDDSHDKDIPTMYSQGVH
        MR  S S FGWNEEFQCI+ + +LFDSW+KSH AAKG LHKSF YYDDL YVF KD+ATGA  ETF +VGSN+ NMFND +PL DSHD+DIPTMYSQGVH
Subjt:  MRESSSSCFGWNEEFQCIVVKGELFDSWVKSHRAAKGFLHKSFSYYDDLFYVFDKDQATGACLETFADVGSNMLNMFNDGVPLDDSHDKDIPTMYSQGVH

Query:  MSLDEMFGTRTGQASGRRNCSSGSKRKRGSQHYETVKVIRSVMEFRNDQLKAIVDWSKEKRATEVELHAKVVKQLQDIPELRSQDRTKLIQILFRSVEGI
        MS DEMFG R GQAS RRNCSS SKRKRGS+ YETV+VIRSVMEF N+QLKAI DW KEKRA EVE+ A+VVKQLQDIP+LRSQDR KL+QILFRS+E I
Subjt:  MSLDEMFGTRTGQASGRRNCSSGSKRKRGSQHYETVKVIRSVMEFRNDQLKAIVDWSKEKRATEVELHAKVVKQLQDIPELRSQDRTKLIQILFRSVEGI

Query:  EGFLSIPTELKLEYCNVLLENNV
        EGFLSIPTELKLEYCN+LL+N V
Subjt:  EGFLSIPTELKLEYCNVLLENNV

A0A5D3BZU3 Retrotransposon protein3.9e-7778.35Show/hide
Query:  KSHRAAKGFLHKSFSYYDDLFYVFDKDQATGACLETFADVGSNMLNMFNDGVPLDDSHDKDIPTMYSQGVHMSLDEMFGTRTGQASGRRNCSSGSKRKRG
        +SH AAKG LHKSF YYDDL YVF  D ATGA  ETFAD GSN+ NMFNDGVPL DSH++DI T+YSQGVHMSLDE+FG R GQAS RRN SSGSKRKRG
Subjt:  KSHRAAKGFLHKSFSYYDDLFYVFDKDQATGACLETFADVGSNMLNMFNDGVPLDDSHDKDIPTMYSQGVHMSLDEMFGTRTGQASGRRNCSSGSKRKRG

Query:  SQHYETVKVIRSVMEFRNDQLKAIVDWSKEKRATEVELHAKVVKQLQDIPELRSQDRTKLIQILFRSVEGIEGFLSIPTELKLEYCNVLLENNV
        S+HYE V+VI S  EF NDQLK I DW KEKRATEVEL  +VVKQLQDIP+LRSQDR KL+QILFRSVE IEGFLSIPT+LKLEYCN+LLENNV
Subjt:  SQHYETVKVIRSVMEFRNDQLKAIVDWSKEKRATEVELHAKVVKQLQDIPELRSQDRTKLIQILFRSVEGIEGFLSIPTELKLEYCNVLLENNV

A0A5D3CVB7 Retrotransposon protein1.6e-7878.17Show/hide
Query:  FDSWVKSHRAAKGFLHKSFSYYDDLFYVFDKDQATGACLETFADVGSNMLNMFNDGVPLDDSHDKDIPTMYSQGVHMSLDEMFGTRTGQASGRRNCSSGS
        F  W++SH   KG L+KSF YYDD+ YVF KDQAT A  ETFADVGSN+ NMFNDGVPL DSH +DIPTMYSQGV MSLDEMFGTR GQAS RRNCSS S
Subjt:  FDSWVKSHRAAKGFLHKSFSYYDDLFYVFDKDQATGACLETFADVGSNMLNMFNDGVPLDDSHDKDIPTMYSQGVHMSLDEMFGTRTGQASGRRNCSSGS

Query:  KRKRGSQHYETVKVIRSVMEFRNDQLKAIVDWSKEKRATEVELHAKVVKQLQDIPELRSQDRTKLIQILFRSVEGIEGFLSIPTELKLEYCNVLLEN
        KRK+GSQHYETV+VIRS M+F NDQLKAI DW KEKRA +VEL A VVKQLQDIP+L+++DR K+IQILF SVEGIEGFLSIPTELKLEYCNVLLEN
Subjt:  KRKRGSQHYETVKVIRSVMEFRNDQLKAIVDWSKEKRATEVELHAKVVKQLQDIPELRSQDRTKLIQILFRSVEGIEGFLSIPTELKLEYCNVLLEN

A0A5D3DG22 Retrotransposon protein5.1e-7768.16Show/hide
Query:  MRESSSSCFGWNEEFQCIVVKGELFDSWVKSHRAAKGFLHKSFSYYDDLFYVFDKDQATGACLETFADVGSNMLNMFNDGVPLDDSHDKDIPTMYSQGVH
        MR  S S FGWNEEFQCI+ + +LFDSWVKSH A KG LHKSF YYDDL YVF KD+ATGA  ETF DVGSN+ NMFND +PL DSHD+DIPTMYSQGVH
Subjt:  MRESSSSCFGWNEEFQCIVVKGELFDSWVKSHRAAKGFLHKSFSYYDDLFYVFDKDQATGACLETFADVGSNMLNMFNDGVPLDDSHDKDIPTMYSQGVH

Query:  MSLDEMFGTRTGQASGRRNCSSGSKRKRGSQHYETVKVIRSVMEFRNDQLKAIVDWSKEKRATEVELHAKVVKQLQDIPELRSQDRTKLIQILFRSVEGI
        +S DEMFG R                          +VIRSVMEF N+QLKAI DW+KEKRA E+E+ A+VVKQLQDIPELRSQ RTKL+QILFRS+E I
Subjt:  MSLDEMFGTRTGQASGRRNCSSGSKRKRGSQHYETVKVIRSVMEFRNDQLKAIVDWSKEKRATEVELHAKVVKQLQDIPELRSQDRTKLIQILFRSVEGI

Query:  EGFLSIPTELKLEYCNVLLENNV
         GFLSIPTELKLEYCN+LL+NNV
Subjt:  EGFLSIPTELKLEYCNVLLENNV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGGAGTCGTCGAGTAGTTGCTTTGGATGGAACGAAGAATTTCAATGCATCGTCGTAAAAGGAGAGTTGTTTGATAGTTGGGTAAAGAGCCATCGTGCAGCCAAAGG
CTTTCTACACAAATCATTTTCATATTATGATGATCTATTCTATGTCTTCGACAAAGATCAGGCAACGGGAGCATGTTTAGAGACCTTTGCTGATGTAGGATCTAATATGC
TAAACATGTTTAATGACGGTGTTCCCCTCGATGATTCACATGATAAAGACATCCCAACGATGTATAGCCAAGGAGTGCATATGTCACTAGATGAGATGTTTGGAACACGT
ACAGGTCAAGCAAGTGGGAGAAGAAATTGTTCAAGTGGAAGTAAAAGAAAACGAGGTAGCCAACATTATGAAACGGTAAAGGTGATTAGGAGTGTAATGGAATTTAGAAA
TGATCAATTAAAAGCAATTGTAGATTGGTCAAAAGAGAAGCGTGCAACGGAGGTCGAATTGCATGCTAAAGTCGTGAAACAGCTGCAAGATATCCCTGAACTACGAAGCC
AAGATAGGACAAAGCTTATTCAAATCTTATTCCGTAGTGTGGAGGGCATTGAGGGGTTCTTGTCGATTCCAACAGAACTTAAATTGGAGTATTGCAATGTTCTCTTGGAA
AATAATGTTTGA
mRNA sequenceShow/hide mRNA sequence
ACACACATGGACTAAAGAGGAAGAAGCAAAACTAGTTGAGTGCTTGGTCAAATTTGTTTCAGCTGGTGGATGGAGGTCGGATAGTAGGACATTTCGACCTGGGTACCTGG
CCCAATTACAACGGATGATGGTAGAGAAGTTGCCCGACACTAATATCCAAGGATCGTCCATGATAGATTGTCATGTGAAATCTGTTAAAAAACCTACCAAGCAATTGCAG
AAATGAGGGAGTCGTCGAGTAGTTGCTTTGGATGGAACGAAGAATTTCAATGCATCGTCGTAAAAGGAGAGTTGTTTGATAGTTGGGTAAAGAGCCATCGTGCAGCCAAA
GGCTTTCTACACAAATCATTTTCATATTATGATGATCTATTCTATGTCTTCGACAAAGATCAGGCAACGGGAGCATGTTTAGAGACCTTTGCTGATGTAGGATCTAATAT
GCTAAACATGTTTAATGACGGTGTTCCCCTCGATGATTCACATGATAAAGACATCCCAACGATGTATAGCCAAGGAGTGCATATGTCACTAGATGAGATGTTTGGAACAC
GTACAGGTCAAGCAAGTGGGAGAAGAAATTGTTCAAGTGGAAGTAAAAGAAAACGAGGTAGCCAACATTATGAAACGGTAAAGGTGATTAGGAGTGTAATGGAATTTAGA
AATGATCAATTAAAAGCAATTGTAGATTGGTCAAAAGAGAAGCGTGCAACGGAGGTCGAATTGCATGCTAAAGTCGTGAAACAGCTGCAAGATATCCCTGAACTACGAAG
CCAAGATAGGACAAAGCTTATTCAAATCTTATTCCGTAGTGTGGAGGGCATTGAGGGGTTCTTGTCGATTCCAACAGAACTTAAATTGGAGTATTGCAATGTTCTCTTGG
AAAATAATGTTTGA
Protein sequenceShow/hide protein sequence
MRESSSSCFGWNEEFQCIVVKGELFDSWVKSHRAAKGFLHKSFSYYDDLFYVFDKDQATGACLETFADVGSNMLNMFNDGVPLDDSHDKDIPTMYSQGVHMSLDEMFGTR
TGQASGRRNCSSGSKRKRGSQHYETVKVIRSVMEFRNDQLKAIVDWSKEKRATEVELHAKVVKQLQDIPELRSQDRTKLIQILFRSVEGIEGFLSIPTELKLEYCNVLLE
NNV