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MELO3C009013 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C009013
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptiontRNA pseudouridine synthase
Genome locationchr08:20004360..20004578
RNA-Seq ExpressionMELO3C009013
SyntenyMELO3C009013
Gene Ontology termsGO:0031119 - tRNA pseudouridine synthesis (biological process)
GO:0003723 - RNA binding (molecular function)
GO:0106029 - tRNA pseudouridine synthase activity (molecular function)
InterPro domainsIPR001406 - Pseudouridine synthase I, TruA
IPR020094 - Pseudouridine synthase TruA/RsuA/RluB/E/F, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3437272.1 hypothetical protein FNV43_RR20025 [Rhamnella rubrinervis]6.0e-1384.78Show/hide
Query:  VRNIIGKFVDETKAQMLKDKCLPLEGCVVVAGRTDKGVTALQQVCT
        V   IGKFVDE KAQ+LKDKCLP+EGCVVVAGRTDKGVTALQQVC+
Subjt:  VRNIIGKFVDETKAQMLKDKCLPLEGCVVVAGRTDKGVTALQQVCT
TYK28521.1 tRNA pseudouridine synthase A [Cucumis melo var. makuwa]7.8e-1382.98Show/hide
Query:  LVRNIIGKFVDETKAQMLKDKCLPLEGCVVVAGRTDKGVTALQQVCT
        LV   +GKFVDE KAQMLKDKCLPLEGC VVAGRTDKGVTAL+QVC+
Subjt:  LVRNIIGKFVDETKAQMLKDKCLPLEGCVVVAGRTDKGVTALQQVCT
XP_008453520.1 PREDICTED: tRNA pseudouridine synthase A [Cucumis melo]7.8e-1382.98Show/hide
Query:  LVRNIIGKFVDETKAQMLKDKCLPLEGCVVVAGRTDKGVTALQQVCT
        LV   +GKFVDE KAQMLKDKCLPLEGC VVAGRTDKGVTAL+QVC+
Subjt:  LVRNIIGKFVDETKAQMLKDKCLPLEGCVVVAGRTDKGVTALQQVCT
XP_015881667.1 uncharacterized protein LOC107417573 [Ziziphus jujuba]7.8e-1382.98Show/hide
Query:  LVRNIIGKFVDETKAQMLKDKCLPLEGCVVVAGRTDKGVTALQQVCT
        LV   +GKFVDE KAQ+LKDKCLPLEGC VVAGRTDKGVTALQQVC+
Subjt:  LVRNIIGKFVDETKAQMLKDKCLPLEGCVVVAGRTDKGVTALQQVCT
XP_015881730.1 uncharacterized protein LOC107417627 [Ziziphus jujuba]7.8e-1382.98Show/hide
Query:  LVRNIIGKFVDETKAQMLKDKCLPLEGCVVVAGRTDKGVTALQQVCT
        LV   +GKFVDE KAQ+LKDKCLPLEGC VVAGRTDKGVTALQQVC+
Subjt:  LVRNIIGKFVDETKAQMLKDKCLPLEGCVVVAGRTDKGVTALQQVCT
TrEMBL top hitse value%identityAlignment
A0A1S3BWI6 tRNA pseudouridine synthase3.8e-1382.98Show/hide
Query:  LVRNIIGKFVDETKAQMLKDKCLPLEGCVVVAGRTDKGVTALQQVCT
        LV   +GKFVDE KAQMLKDKCLPLEGC VVAGRTDKGVTAL+QVC+
Subjt:  LVRNIIGKFVDETKAQMLKDKCLPLEGCVVVAGRTDKGVTALQQVCT
A0A5A7UXE7 tRNA pseudouridine synthase3.8e-1382.98Show/hide
Query:  LVRNIIGKFVDETKAQMLKDKCLPLEGCVVVAGRTDKGVTALQQVCT
        LV   +GKFVDE KAQMLKDKCLPLEGC VVAGRTDKGVTAL+QVC+
Subjt:  LVRNIIGKFVDETKAQMLKDKCLPLEGCVVVAGRTDKGVTALQQVCT
A0A5D3DY63 tRNA pseudouridine synthase A3.8e-1382.98Show/hide
Query:  LVRNIIGKFVDETKAQMLKDKCLPLEGCVVVAGRTDKGVTALQQVCT
        LV   +GKFVDE KAQMLKDKCLPLEGC VVAGRTDKGVTAL+QVC+
Subjt:  LVRNIIGKFVDETKAQMLKDKCLPLEGCVVVAGRTDKGVTALQQVCT
A0A6P3ZQW7 tRNA pseudouridine synthase3.8e-1382.98Show/hide
Query:  LVRNIIGKFVDETKAQMLKDKCLPLEGCVVVAGRTDKGVTALQQVCT
        LV   +GKFVDE KAQ+LKDKCLPLEGC VVAGRTDKGVTALQQVC+
Subjt:  LVRNIIGKFVDETKAQMLKDKCLPLEGCVVVAGRTDKGVTALQQVCT
A0A6P4A7G1 tRNA pseudouridine synthase3.8e-1382.98Show/hide
Query:  LVRNIIGKFVDETKAQMLKDKCLPLEGCVVVAGRTDKGVTALQQVCT
        LV   +GKFVDE KAQ+LKDKCLPLEGC VVAGRTDKGVTALQQVC+
Subjt:  LVRNIIGKFVDETKAQMLKDKCLPLEGCVVVAGRTDKGVTALQQVCT
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G35400.1 Pseudouridine synthase family protein5.4e-1268.09Show/hide
Query:  LVRNIIGKFVDETKAQMLKDKCLPLEGCVVVAGRTDKGVTALQQVCT
        +V   +G FVDE KAQ+LK KC PLEG V+VAGRTDKGV+AL QVC+
Subjt:  LVRNIIGKFVDETKAQMLKDKCLPLEGCVVVAGRTDKGVTALQQVCT
AT5G35400.2 Pseudouridine synthase family protein5.4e-1268.09Show/hide
Query:  LVRNIIGKFVDETKAQMLKDKCLPLEGCVVVAGRTDKGVTALQQVCT
        +V   +G FVDE KAQ+LK KC PLEG V+VAGRTDKGV+AL QVC+
Subjt:  LVRNIIGKFVDETKAQMLKDKCLPLEGCVVVAGRTDKGVTALQQVCT

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAACACTGATGTATATAGGAGGATTATGTCTACTTGCATCCTTTGGCAGCTTGTTAGAAATATCATAGGGAAGTTTGTAGATGAGACGAAAGCTCAAATGCTGAA
AGATAAATGCTTACCATTAGAAGGATGTGTTGTGGTTGCTGGGCGCACTGACAAAGGGGTGACTGCTCTACAACAAGTTTGCACAATTTGTTGTATGTTAGCTTTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAAACACTGATGTATATAGGAGGATTATGTCTACTTGCATCCTTTGGCAGCTTGTTAGAAATATCATAGGGAAGTTTGTAGATGAGACGAAAGCTCAAATGCTGAA
AGATAAATGCTTACCATTAGAAGGATGTGTTGTGGTTGCTGGGCGCACTGACAAAGGGGTGACTGCTCTACAACAAGTTTGCACAATTTGTTGTATGTTAGCTTTCTAA
Protein sequenceShow/hide protein sequence
MENTDVYRRIMSTCILWQLVRNIIGKFVDETKAQMLKDKCLPLEGCVVVAGRTDKGVTALQQVCTICCMLAF