; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MELO3C009051 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C009051
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionGag/pol protein
Genome locationchr08:19002495..19008737
RNA-Seq ExpressionMELO3C009051
SyntenyMELO3C009051
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035470.1 gag/pol protein [Cucumis melo var. makuwa]1.1e-0560.66Show/hide
Query:  LSLRLEITMCTLVSLGLLVKSVNSESRQIQVKESVVRRLHAILWSKLAGSLGGGVTSKHII
        LSL  ++     VSLGLLVKSVN ESRQIQV++SVV  LHAI  SK+AGS  GGVT   ++
Subjt:  LSLRLEITMCTLVSLGLLVKSVNSESRQIQVKESVVRRLHAILWSKLAGSLGGGVTSKHII
KAA0042349.1 uncharacterized protein E6C27_scaffold795G00510 [Cucumis melo var. makuwa]1.1e-0784.09Show/hide
Query:  VSLGLLVKSVNSESRQIQVKESVVRRLHAILWSKLAGSLGGGVT
        VSLGLLVKSVN ESRQIQV++SVVRRLHAI  SK+AGS GGGVT
Subjt:  VSLGLLVKSVNSESRQIQVKESVVRRLHAILWSKLAGSLGGGVT
KAA0056695.1 hypothetical protein E6C27_scaffold73G00230 [Cucumis melo var. makuwa]7.0e-0547.87Show/hide
Query:  MTKILSLRLEITMCTL----------------------------------VSLGLLVKSVNSESRQIQVKESVVRRLHAILWSKLAGSLGGGVT
        MT+ILSLRLEIT+CTL                                  VSLGLLVKSVN      +V++SVVRRLHAI  SK+AGS GGGVT
Subjt:  MTKILSLRLEITMCTL----------------------------------VSLGLLVKSVNSESRQIQVKESVVRRLHAILWSKLAGSLGGGVT
KAA0060081.1 hypothetical protein E6C27_scaffold160G00510 [Cucumis melo var. makuwa]8.5e-19100Show/hide
Query:  MRVANRTWAETENWASGHAECASREVGRAWSTQSLKEYAIGHRSVLSQNL
        MRVANRTWAETENWASGHAECASREVGRAWSTQSLKEYAIGHRSVLSQNL
Subjt:  MRVANRTWAETENWASGHAECASREVGRAWSTQSLKEYAIGHRSVLSQNL
TYK31055.1 gag/pol protein [Cucumis melo var. makuwa]6.3e-0669.39Show/hide
Query:  VSLGLLVKSVNSESRQIQVKESVVRRLHAILWSKLAGSLGGGVTSKHII
        VSLGLLVKSVN ESRQIQV++SVV  LHAI  SK+AGS  GGVT   ++
Subjt:  VSLGLLVKSVNSESRQIQVKESVVRRLHAILWSKLAGSLGGGVTSKHII
TrEMBL top hitse value%identityAlignment
A0A5A7SWQ7 Gag/pol protein5.2e-0660.66Show/hide
Query:  LSLRLEITMCTLVSLGLLVKSVNSESRQIQVKESVVRRLHAILWSKLAGSLGGGVTSKHII
        LSL  ++     VSLGLLVKSVN ESRQIQV++SVV  LHAI  SK+AGS  GGVT   ++
Subjt:  LSLRLEITMCTLVSLGLLVKSVNSESRQIQVKESVVRRLHAILWSKLAGSLGGGVTSKHII
A0A5A7TLX3 Retrotrans_gag domain-containing protein5.6e-0884.09Show/hide
Query:  VSLGLLVKSVNSESRQIQVKESVVRRLHAILWSKLAGSLGGGVT
        VSLGLLVKSVN ESRQIQV++SVVRRLHAI  SK+AGS GGGVT
Subjt:  VSLGLLVKSVNSESRQIQVKESVVRRLHAILWSKLAGSLGGGVT
A0A5A7UT45 Uncharacterized protein3.4e-0547.87Show/hide
Query:  MTKILSLRLEITMCTL----------------------------------VSLGLLVKSVNSESRQIQVKESVVRRLHAILWSKLAGSLGGGVT
        MT+ILSLRLEIT+CTL                                  VSLGLLVKSVN      +V++SVVRRLHAI  SK+AGS GGGVT
Subjt:  MTKILSLRLEITMCTL----------------------------------VSLGLLVKSVNSESRQIQVKESVVRRLHAILWSKLAGSLGGGVT
A0A5A7V2U4 Uncharacterized protein4.1e-19100Show/hide
Query:  MRVANRTWAETENWASGHAECASREVGRAWSTQSLKEYAIGHRSVLSQNL
        MRVANRTWAETENWASGHAECASREVGRAWSTQSLKEYAIGHRSVLSQNL
Subjt:  MRVANRTWAETENWASGHAECASREVGRAWSTQSLKEYAIGHRSVLSQNL
A0A5D3E6W6 Gag/pol protein3.0e-0669.39Show/hide
Query:  VSLGLLVKSVNSESRQIQVKESVVRRLHAILWSKLAGSLGGGVTSKHII
        VSLGLLVKSVN ESRQIQV++SVV  LHAI  SK+AGS  GGVT   ++
Subjt:  VSLGLLVKSVNSESRQIQVKESVVRRLHAILWSKLAGSLGGGVTSKHII
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTAGGAGTGAATTTCATCTTGCATCCTATGTCCCTAGTCATCCACCCGGTTTGAATTCGAAGTCGCATAATTATCGTCGTTTAAGAATTTCAGAAGCTAAG
AGTTGTACTGTTGAGTCATTCATGAAAGTTGGAGAAAATTCGGATATTCATTGGGTGCTTTTTGATGAAGAAAACAGGGTCGTTGGTTTTCACGCGAAATCAGGA
GGTCTCTGGTTTTTCTTAGGTCGTGTGCGTGCAATTCTTAAAGCTGTTCTGTTTCGAGGGTTATCTGAGTTTATTCATAGGGAATCAGATTTATATGTCTTCAGT
ATACATTTGGAGACTAGATTTCTTAAAGAAATTTATGCTAGCACGTGGATATTAAATGTTTGGAAAATGATTTATGAAATTTTCATTAACTACATGACTAAGATC
TTGAGCCTGAGGCTAGAGATTACCATGTGCACACTGGTGTCTTTAGGTTTACTCGTGAAATCAGTTAATTCCGAGAGTCGACAGATACAGGTAAAGGAAAGCGTT
GTTCGTCGGCTTCACGCCATCTTGTGGTCTAAGCTAGCAGGTAGTCTGGGAGGGGGTGTGACAAGCAAGCACATTATAGGAATCTCACGATGCGACTCATGGAAG
AGACCATGGGATTACATTACTTTCCCTACCCAAAAGGATTGTGGGCCAAGTGTGTGCTATCTGGATCAAAGGCGTGATGGTAGGTCGCATGCGAGAAAGGCCAGG
GACGGGTTAATGCGCACGGGTCGGGTCGTCAGACGAGTCACAATGAGGGTTGCAAACAGAACTTGGGCCGAAACTGAAAACTGGGCTAGTGGGCACGCTGAGTGT
GCTTCGCGTGAAGTGGGTCGGGCTTGGAGTACACAATCACTTAAGGAGTACGCGATTGGTCATCGGTCGGTTCTGAGTCAAAATCTAGGTCTGGGGAGTAAAATC
GGGTCCGTCTTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGTAGGAGTGAATTTCATCTTGCATCCTATGTCCCTAGTCATCCACCCGGTTTGAATTCGAAGTCGCATAATTATCGTCGTTTAAGAATTTCAGAAGCTAAG
AGTTGTACTGTTGAGTCATTCATGAAAGTTGGAGAAAATTCGGATATTCATTGGGTGCTTTTTGATGAAGAAAACAGGGTCGTTGGTTTTCACGCGAAATCAGGA
GGTCTCTGGTTTTTCTTAGGTCGTGTGCGTGCAATTCTTAAAGCTGTTCTGTTTCGAGGGTTATCTGAGTTTATTCATAGGGAATCAGATTTATATGTCTTCAGT
ATACATTTGGAGACTAGATTTCTTAAAGAAATTTATGCTAGCACGTGGATATTAAATGTTTGGAAAATGATTTATGAAATTTTCATTAACTACATGACTAAGATC
TTGAGCCTGAGGCTAGAGATTACCATGTGCACACTGGTGTCTTTAGGTTTACTCGTGAAATCAGTTAATTCCGAGAGTCGACAGATACAGGTAAAGGAAAGCGTT
GTTCGTCGGCTTCACGCCATCTTGTGGTCTAAGCTAGCAGGTAGTCTGGGAGGGGGTGTGACAAGCAAGCACATTATAGGAATCTCACGATGCGACTCATGGAAG
AGACCATGGGATTACATTACTTTCCCTACCCAAAAGGATTGTGGGCCAAGTGTGTGCTATCTGGATCAAAGGCGTGATGGTAGGTCGCATGCGAGAAAGGCCAGG
GACGGGTTAATGCGCACGGGTCGGGTCGTCAGACGAGTCACAATGAGGGTTGCAAACAGAACTTGGGCCGAAACTGAAAACTGGGCTAGTGGGCACGCTGAGTGT
GCTTCGCGTGAAGTGGGTCGGGCTTGGAGTACACAATCACTTAAGGAGTACGCGATTGGTCATCGGTCGGTTCTGAGTCAAAATCTAGGTCTGGGGAGTAAAATC
GGGTCCGTCTTCTAA
Protein sequenceShow/hide protein sequence
MGRSEFHLASYVPSHPPGLNSKSHNYRRLRISEAKSCTVESFMKVGENSDIHWVLFDEENRVVGFHAKSGGLWFFLGRVRAILKAVLFRGLSEFIHRESDLYVFS
IHLETRFLKEIYASTWILNVWKMIYEIFINYMTKILSLRLEITMCTLVSLGLLVKSVNSESRQIQVKESVVRRLHAILWSKLAGSLGGGVTSKHIIGISRCDSWK
RPWDYITFPTQKDCGPSVCYLDQRRDGRSHARKARDGLMRTGRVVRRVTMRVANRTWAETENWASGHAECASREVGRAWSTQSLKEYAIGHRSVLSQNLGLGSKI
GSVF