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MELO3C009751 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C009751
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
Descriptionexopolygalacturonase-like
Genome locationchr04:28497015..28498550
RNA-Seq ExpressionMELO3C009751
SyntenyMELO3C009751
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0004650 - polygalacturonase activity (molecular function)
InterPro domainsIPR000743 - Glycoside hydrolase, family 28
IPR011050 - Pectin lyase fold/virulence factor
IPR012334 - Pectin lyase fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045593.1 exopolygalacturonase-like [Cucumis melo var. makuwa]3.0e-2685.14Show/hide
Query:  KGRDGFLLEYVDQLTVSGTGVLVGQGKAGWEKNDYDLKKRCTKLPMNLKLNFITNSIVKDIMSLDSKNYHINLI
        KG    LLEYVDQLTVSGTGVL GQGKAGWEKND  LKK CTKLPMNLKLNF+TNSIVKDI SLDSKNYHINL+
Subjt:  KGRDGFLLEYVDQLTVSGTGVLVGQGKAGWEKNDYDLKKRCTKLPMNLKLNFITNSIVKDIMSLDSKNYHINLI

KAA0045594.1 exopolygalacturonase-like [Cucumis melo var. makuwa]3.0e-2685.14Show/hide
Query:  KGRDGFLLEYVDQLTVSGTGVLVGQGKAGWEKNDYDLKKRCTKLPMNLKLNFITNSIVKDIMSLDSKNYHINLI
        KG    LLEYVDQLTVSGTGVL GQGKAGWEKND  LKK CTKLPMNLKLNF+TNSIVKDI SLDSKNYHINL+
Subjt:  KGRDGFLLEYVDQLTVSGTGVLVGQGKAGWEKNDYDLKKRCTKLPMNLKLNFITNSIVKDIMSLDSKNYHINLI

KAA0045608.1 exopolygalacturonase-like [Cucumis melo var. makuwa]3.0e-2685.14Show/hide
Query:  KGRDGFLLEYVDQLTVSGTGVLVGQGKAGWEKNDYDLKKRCTKLPMNLKLNFITNSIVKDIMSLDSKNYHINLI
        KG    LLEYVDQLTVSGTGVL GQGKAGWEKND  LKK CTKLPMNLKLNF+TNSIVKDI SLDSKNYHINL+
Subjt:  KGRDGFLLEYVDQLTVSGTGVLVGQGKAGWEKNDYDLKKRCTKLPMNLKLNFITNSIVKDIMSLDSKNYHINLI

KAA0045610.1 exopolygalacturonase-like [Cucumis melo var. makuwa]3.0e-2685.14Show/hide
Query:  KGRDGFLLEYVDQLTVSGTGVLVGQGKAGWEKNDYDLKKRCTKLPMNLKLNFITNSIVKDIMSLDSKNYHINLI
        KG    LLEYVDQLTVSGTGVL GQGKAGWEKND  LKK CTKLPMNLKLNF+TNSIVKDI SLDSKNYHINL+
Subjt:  KGRDGFLLEYVDQLTVSGTGVLVGQGKAGWEKNDYDLKKRCTKLPMNLKLNFITNSIVKDIMSLDSKNYHINLI

XP_016903689.1 PREDICTED: exopolygalacturonase-like, partial [Cucumis melo]3.0e-2685.14Show/hide
Query:  KGRDGFLLEYVDQLTVSGTGVLVGQGKAGWEKNDYDLKKRCTKLPMNLKLNFITNSIVKDIMSLDSKNYHINLI
        KG    LLEYVDQLTVSGTGVL GQGKAGWEKND  LKK CTKLPMNLKLNF+TNSIVKDI SLDSKNYHINL+
Subjt:  KGRDGFLLEYVDQLTVSGTGVLVGQGKAGWEKNDYDLKKRCTKLPMNLKLNFITNSIVKDIMSLDSKNYHINLI

TrEMBL top hitse value%identityAlignment
A0A1S4E643 exopolygalacturonase-like1.4e-2685.14Show/hide
Query:  KGRDGFLLEYVDQLTVSGTGVLVGQGKAGWEKNDYDLKKRCTKLPMNLKLNFITNSIVKDIMSLDSKNYHINLI
        KG    LLEYVDQLTVSGTGVL GQGKAGWEKND  LKK CTKLPMNLKLNF+TNSIVKDI SLDSKNYHINL+
Subjt:  KGRDGFLLEYVDQLTVSGTGVLVGQGKAGWEKNDYDLKKRCTKLPMNLKLNFITNSIVKDIMSLDSKNYHINLI

A0A5A7TR51 Exopolygalacturonase-like1.4e-2685.14Show/hide
Query:  KGRDGFLLEYVDQLTVSGTGVLVGQGKAGWEKNDYDLKKRCTKLPMNLKLNFITNSIVKDIMSLDSKNYHINLI
        KG    LLEYVDQLTVSGTGVL GQGKAGWEKND  LKK CTKLPMNLKLNF+TNSIVKDI SLDSKNYHINL+
Subjt:  KGRDGFLLEYVDQLTVSGTGVLVGQGKAGWEKNDYDLKKRCTKLPMNLKLNFITNSIVKDIMSLDSKNYHINLI

A0A5A7TRZ0 Exopolygalacturonase-like1.4e-2685.14Show/hide
Query:  KGRDGFLLEYVDQLTVSGTGVLVGQGKAGWEKNDYDLKKRCTKLPMNLKLNFITNSIVKDIMSLDSKNYHINLI
        KG    LLEYVDQLTVSGTGVL GQGKAGWEKND  LKK CTKLPMNLKLNF+TNSIVKDI SLDSKNYHINL+
Subjt:  KGRDGFLLEYVDQLTVSGTGVLVGQGKAGWEKNDYDLKKRCTKLPMNLKLNFITNSIVKDIMSLDSKNYHINLI

A0A5D3BWP4 Exopolygalacturonase-like1.4e-2685.14Show/hide
Query:  KGRDGFLLEYVDQLTVSGTGVLVGQGKAGWEKNDYDLKKRCTKLPMNLKLNFITNSIVKDIMSLDSKNYHINLI
        KG    LLEYVDQLTVSGTGVL GQGKAGWEKND  LKK CTKLPMNLKLNF+TNSIVKDI SLDSKNYHINL+
Subjt:  KGRDGFLLEYVDQLTVSGTGVLVGQGKAGWEKNDYDLKKRCTKLPMNLKLNFITNSIVKDIMSLDSKNYHINLI

A0A5D3DYI3 Exopolygalacturonase-like1.4e-2685.14Show/hide
Query:  KGRDGFLLEYVDQLTVSGTGVLVGQGKAGWEKNDYDLKKRCTKLPMNLKLNFITNSIVKDIMSLDSKNYHINLI
        KG    LLEYVDQLTVSGTGVL GQGKAGWEKND  LKK CTKLPMNLKLNF+TNSIVKDI SLDSKNYHINL+
Subjt:  KGRDGFLLEYVDQLTVSGTGVLVGQGKAGWEKNDYDLKKRCTKLPMNLKLNFITNSIVKDIMSLDSKNYHINLI

SwissProt top hitse value%identityAlignment
P24548 Exopolygalacturonase (Fragment)5.6e-1246.75Show/hide
Query:  KSKGRDGFLLEYVDQLTVSGTGVLVGQGKAGWEKND-YDLKKRCTKLPMNLKLNFITNSIVKDIMSLDSKNYHINLI
        K KG     L  +D LT+ G GV  GQGK+ W +ND +     C  L MNL+L  +TNSI++D+ +LDSKN+H+N+I
Subjt:  KSKGRDGFLLEYVDQLTVSGTGVLVGQGKAGWEKND-YDLKKRCTKLPMNLKLNFITNSIVKDIMSLDSKNYHINLI

P35337 Polygalacturonase5.3e-1035.06Show/hide
Query:  SKGRDGFLL-EYVDQLTVSGTGVLVGQGKAGWEKNDYDLKKRCTKLPMNLKLNFITNSIVKDIMSLDSKNYHINLIS
        ++G+D +++ E ++   ++G G   G+G A W+ N+      C KLP++++ +F+ N+ +KD+ SLD+KN+H N+IS
Subjt:  SKGRDGFLL-EYVDQLTVSGTGVLVGQGKAGWEKNDYDLKKRCTKLPMNLKLNFITNSIVKDIMSLDSKNYHINLIS

Q05967 Polygalacturonase2.8e-1150.79Show/hide
Query:  VDQLTVSGTGVLVGQGKAGWEKNDYDLKKRCTKLPMNLKLNFITNSIVKDIMSLDSKNYHINL
        +DQ T+SG G+L GQ  A WE       K+C KLP NL  N +TNS +KDI +LDSK++H+N+
Subjt:  VDQLTVSGTGVLVGQGKAGWEKNDYDLKKRCTKLPMNLKLNFITNSIVKDIMSLDSKNYHINL

Q39766 Polygalacturonase2.2e-0838.46Show/hide
Query:  VDQLTVSGTGVLVGQGKAGWEKNDYDLKKRCTKLPMNLKLNFITNSIVKDIMSLDSKNYHINLIS
        V+   + G G+  GQG   +EKN  + ++  +KLP+N++ +F+TN++++DI S DSK +HIN+ +
Subjt:  VDQLTVSGTGVLVGQGKAGWEKNDYDLKKRCTKLPMNLKLNFITNSIVKDIMSLDSKNYHINLIS

Q6H9K0 Exopolygalacturonase (Fragment)3.3e-1247.22Show/hide
Query:  DGFLLEY-VDQLTVSGTGVLVGQGKAGWEKNDYDLKKRCTKLPMNLKLNFITNSIVKDIMSLDSKNYHINLI
        DG++  Y +D LTVSGTG L GQG+  W KN+ D    C    MNL+ +F+ +++V+DI SL+SK +HIN++
Subjt:  DGFLLEY-VDQLTVSGTGVLVGQGKAGWEKNDYDLKKRCTKLPMNLKLNFITNSIVKDIMSLDSKNYHINLI

Arabidopsis top hitse value%identityAlignment
AT1G43090.1 Pectin lyase-like superfamily protein8.3e-1145.45Show/hide
Query:  YVDQLTVSGTGVLVGQGKAGWEKNDYDLKKRCTKLPMNLKLNFITNSIVKDIMSLDSKNYHINLIS
        Y++ L++SG+G L GQGK  W  ND      C KL M +   F+ NS +KDI SL+SK  H N  S
Subjt:  YVDQLTVSGTGVLVGQGKAGWEKNDYDLKKRCTKLPMNLKLNFITNSIVKDIMSLDSKNYHINLIS

AT2G15450.1 Pectin lyase-like superfamily protein3.7e-1145.45Show/hide
Query:  YVDQLTVSGTGVLVGQGKAGWEKNDYDLKKRCTKLPMNLKLNFITNSIVKDIMSLDSKNYHINLIS
        Y++ L++SG+G L GQGK  W  ND      C KL M +   F+ NS +KDI SL+SK  H N  S
Subjt:  YVDQLTVSGTGVLVGQGKAGWEKNDYDLKKRCTKLPMNLKLNFITNSIVKDIMSLDSKNYHINLIS

AT2G15460.1 Pectin lyase-like superfamily protein3.7e-1145.45Show/hide
Query:  YVDQLTVSGTGVLVGQGKAGWEKNDYDLKKRCTKLPMNLKLNFITNSIVKDIMSLDSKNYHINLIS
        Y++ L++SG+G L GQGK  W  ND      C KL M +   F+ NS +KDI SL+SK  H N  S
Subjt:  YVDQLTVSGTGVLVGQGKAGWEKNDYDLKKRCTKLPMNLKLNFITNSIVKDIMSLDSKNYHINLIS

AT2G15470.1 Pectin lyase-like superfamily protein3.7e-1145.45Show/hide
Query:  YVDQLTVSGTGVLVGQGKAGWEKNDYDLKKRCTKLPMNLKLNFITNSIVKDIMSLDSKNYHINLIS
        Y++ L++SG+G L GQGK  W  ND      C KL M +   F+ NS +KDI SL+SK  H N  S
Subjt:  YVDQLTVSGTGVLVGQGKAGWEKNDYDLKKRCTKLPMNLKLNFITNSIVKDIMSLDSKNYHINLIS

AT4G13760.1 Pectin lyase-like superfamily protein3.7e-1144.78Show/hide
Query:  EYVDQLTVSGTGVLVGQGKAGWEKNDYDLKKRCTKLPMNLKLNFITNSIVKDIMSLDSKNYHINLIS
        +Y++ L++SG+G L GQGK  W  ND      C KL M +   F+ NS +KDI SL+SK  H N  S
Subjt:  EYVDQLTVSGTGVLVGQGKAGWEKNDYDLKKRCTKLPMNLKLNFITNSIVKDIMSLDSKNYHINLIS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGGAGGTATGTGCATCAACCACTCCAAGCCCTTGCATGTAAAAGTTCTATTGAACTACAAATCGAAGGGAAGAGATGGGTTCCTTTTGGAATATGTCGACCAATT
GACAGTGTCAGGTACTGGAGTTTTGGTTGGCCAAGGAAAAGCAGGTTGGGAAAAGAATGATTATGATTTAAAGAAAAGATGCACCAAACTTCCCATGAATTTGAAGTTGA
ATTTTATCACAAATTCAATAGTAAAGGACATAATGTCATTGGATAGCAAGAATTATCATATTAATCTTATATCTTTTGGGTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGATTGATATCAAATTTTGTGGCATTACTGCCATTGTTGTTATTGTTGGTGTCTAATTCTAAAGCTCAATCTACGGGTGGTGTTTTTGATGTCACAACATACGATGC
TAAACCTAATGCTGATATAACTACGGTATGAGTACTTTAGGTGGATGAACGATTTTAATTGATACAAATTAAAACATTTTAGTTATCAAATGAAATGATTTAATTTTACA
GGCTTTGGCAAGTGCATGGAAGGAGGTATGTGCATCAACCACTCCAAGCCCTTGCATGTAAAAGTTCTATTGAACTACAAATCGAAGGGAAGAGATGGGTTCCTTTTGGA
ATATGTCGACCAATTGACAGTGTCAGGTACTGGAGTTTTGGTTGGCCAAGGAAAAGCAGGTTGGGAAAAGAATGATTATGATTTAAAGAAAAGATGCACCAAACTTCCCA
TGAATTTGAAGTTGAATTTTATCACAAATTCAATAGTAAAGGACATAATGTCATTGGATAGCAAGAATTATCATATTAATCTTATATCTTTTGGGTTGTAAGAATCTTAC
CTTTGACCACATGACAATTACTACACCAGAGAACAGTCCCAACATCGATGGAACTCACATGAGTAGTTCAAAGGAGATTAACATTCTCAATACCAATATCACAGTCGAAG
ATAATTGTATATCGGTGGGAGATACCAACAAACAGATAGTTATTAGCAATATTACTTGCGAATCGGGGCATGGAATTAGCATAGGATATTTGGGAAAATAGCAAGGAAAA
AAAGTGGTAGGAGTGACGATGAAAAAATGTAAATTGGCCAGTACTACAAACGGTGTTCGAATCAAAACATGGCCAGATTCTGTTGGCACGTTCCCAACCACTGACATGCA
TTTTGAAGATATAGAAATGGTTAATGTGAGTAATCCTATCATCATAGACCAAGAATATTGTCCATGGAACCAATGCAACCGAAAGGTTCCATAAAAAATTAAGATCAACA
AAGTAAGCTTCAAGGATATCACATACACTTCTGTAACTCCGACTGCAGTCAAACTTGTTTGCAGTGCAAGTAAATCCATGTGAGGGCCGAGTGGAAGTTGTTGATATTGG
CCTCACTTATAGTGAAAGTGAAGGTCAAATTAAGTCGCAGTATGCAAATGTGAAACTCGCCATTTTAACAAAACAAAATCCCTCAATCTGTGATGAACCTGCACCAGCTG
ATAGTCCATCAACCGATTGA
Protein sequenceShow/hide protein sequence
MEGGMCINHSKPLHVKVLLNYKSKGRDGFLLEYVDQLTVSGTGVLVGQGKAGWEKNDYDLKKRCTKLPMNLKLNFITNSIVKDIMSLDSKNYHINLISFGL