; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MELO3C010406 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C010406
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Genome locationchr07:10025566..10025964
RNA-Seq ExpressionMELO3C010406
SyntenyMELO3C010406
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033551.1 retrotransposon protein [Cucumis melo var. makuwa]7.3e-4172.09Show/hide
Query:  MEFPAMCRPRMNMSPKDMMSDRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSK
        MEFPAMC PRMNMSP++MM  RS +S+D RM S+ QKRK  MQQ ETYDLI +CME ATDQLRTI EWPEK MS ED M  QVIEL E+IPNLT+AEKSK
Subjt:  MEFPAMCRPRMNMSPKDMMSDRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSK

Query:  CIMIVNQKVSLKRSFIKMFDSMKTAYCKV
        C+M+VNQKVSL RSFIKM DSMK  Y ++
Subjt:  CIMIVNQKVSLKRSFIKMFDSMKTAYCKV

KAA0048148.1 retrotransposon protein [Cucumis melo var. makuwa]1.7e-4274.42Show/hide
Query:  MEFPAMCRPRMNMSPKDMMSDRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSK
        MEFP MC PRMNMSPKDMM  RS +SSD R  SS QKRK  MQQ ETYDLIR+CME ATDQLRTI EWP+KAMS ED M  QVIEL ++I NLT+AEKSK
Subjt:  MEFPAMCRPRMNMSPKDMMSDRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSK

Query:  CIMIVNQKVSLKRSFIKMFDSMKTAYCKV
        C+M+VNQKVSL RSFIKM D MK AYC+V
Subjt:  CIMIVNQKVSLKRSFIKMFDSMKTAYCKV

KAA0055070.1 retrotransposon protein [Cucumis melo var. makuwa]1.3e-2660.47Show/hide
Query:  MEFPAMCRPRMNMSPKDMMSDRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSK
        MEFPAMC PRMNMSP+DM+  RSS+SSD R  SS QKRKR MQQ ET+DLI                             +QVIEL E IPNLT+AEKSK
Subjt:  MEFPAMCRPRMNMSPKDMMSDRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSK

Query:  CIMIVNQKVSLKRSFIKMFDSMKTAYCKV
        CIMI+NQKVSL RSFIKM DSM  AYCKV
Subjt:  CIMIVNQKVSLKRSFIKMFDSMKTAYCKV

KAA0064184.1 retrotransposon protein [Cucumis melo var. makuwa]1.0e-6399.24Show/hide
Query:  MEFPAMCRPRMNMSPKDMMSDRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSK
        MEFPAMCRPRMNMSPKDMMS RSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSK
Subjt:  MEFPAMCRPRMNMSPKDMMSDRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSK

Query:  CIMIVNQKVSLKRSFIKMFDSMKTAYCKVPPW
        CIMIVNQKVSLKRSFIKMFDSMKTAYCKVPPW
Subjt:  CIMIVNQKVSLKRSFIKMFDSMKTAYCKVPPW

TYK02844.1 retrotransposon protein [Cucumis melo var. makuwa]1.0e-6399.24Show/hide
Query:  MEFPAMCRPRMNMSPKDMMSDRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSK
        MEFPAMCRPRMNMSPKDMMS RSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSK
Subjt:  MEFPAMCRPRMNMSPKDMMSDRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSK

Query:  CIMIVNQKVSLKRSFIKMFDSMKTAYCKVPPW
        CIMIVNQKVSLKRSFIKMFDSMKTAYCKVPPW
Subjt:  CIMIVNQKVSLKRSFIKMFDSMKTAYCKVPPW

TrEMBL top hitse value%identityAlignment
A0A5A7TYU4 Retrotransposon protein8.4e-4374.42Show/hide
Query:  MEFPAMCRPRMNMSPKDMMSDRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSK
        MEFP MC PRMNMSPKDMM  RS +SSD R  SS QKRK  MQQ ETYDLIR+CME ATDQLRTI EWP+KAMS ED M  QVIEL ++I NLT+AEKSK
Subjt:  MEFPAMCRPRMNMSPKDMMSDRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSK

Query:  CIMIVNQKVSLKRSFIKMFDSMKTAYCKV
        C+M+VNQKVSL RSFIKM D MK AYC+V
Subjt:  CIMIVNQKVSLKRSFIKMFDSMKTAYCKV

A0A5A7VAC3 Retrotransposon protein5.0e-6499.24Show/hide
Query:  MEFPAMCRPRMNMSPKDMMSDRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSK
        MEFPAMCRPRMNMSPKDMMS RSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSK
Subjt:  MEFPAMCRPRMNMSPKDMMSDRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSK

Query:  CIMIVNQKVSLKRSFIKMFDSMKTAYCKVPPW
        CIMIVNQKVSLKRSFIKMFDSMKTAYCKVPPW
Subjt:  CIMIVNQKVSLKRSFIKMFDSMKTAYCKVPPW

A0A5D3B9T0 Retrotransposon protein3.5e-4172.09Show/hide
Query:  MEFPAMCRPRMNMSPKDMMSDRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSK
        MEFPAMC PRMNMSP++MM  RS +S+D RM S+ QKRK  MQQ ETYDLI +CME ATDQLRTI EWPEK MS ED M  QVIEL E+IPNLT+AEKSK
Subjt:  MEFPAMCRPRMNMSPKDMMSDRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSK

Query:  CIMIVNQKVSLKRSFIKMFDSMKTAYCKV
        C+M+VNQKVSL RSFIKM DSMK  Y ++
Subjt:  CIMIVNQKVSLKRSFIKMFDSMKTAYCKV

A0A5D3BUJ4 Retrotransposon protein5.0e-6499.24Show/hide
Query:  MEFPAMCRPRMNMSPKDMMSDRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSK
        MEFPAMCRPRMNMSPKDMMS RSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSK
Subjt:  MEFPAMCRPRMNMSPKDMMSDRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSK

Query:  CIMIVNQKVSLKRSFIKMFDSMKTAYCKVPPW
        CIMIVNQKVSLKRSFIKMFDSMKTAYCKVPPW
Subjt:  CIMIVNQKVSLKRSFIKMFDSMKTAYCKVPPW

A0A5D3DLC6 Retrotransposon protein6.4e-2760.47Show/hide
Query:  MEFPAMCRPRMNMSPKDMMSDRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSK
        MEFPAMC PRMNMSP+DM+  RSS+SSD R  SS QKRKR MQQ ET+DLI                             +QVIEL E IPNLT+AEKSK
Subjt:  MEFPAMCRPRMNMSPKDMMSDRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSK

Query:  CIMIVNQKVSLKRSFIKMFDSMKTAYCKV
        CIMI+NQKVSL RSFIKM DSM  AYCKV
Subjt:  CIMIVNQKVSLKRSFIKMFDSMKTAYCKV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTTCCCCGCTATGTGCAGACCGAGGATGAACATGTCCCCTAAGGACATGATGAGCGATAGATCAAGCCAGTCGAGCGATGCTAGGATGGTCTCTAGCAGACAAAA
AAGGAAGCGCTTCATGCAGCAGTTAGAGACGTACGACCTGATTCGCAAATGTATGGAGGTTGCGACTGATCAGCTGAGAACCATTGTAGAATGGCCAGAGAAAGCTATGA
GCCGGGAGGACGTGATGCCGGTGCAGGTGATTGAGCTTTCGGAGTCCATCCCAAACCTTACTATAGCGGAGAAGAGTAAGTGCATCATGATAGTGAATCAGAAGGTGTCA
CTCAAAAGAAGCTTCATCAAGATGTTCGATTCGATGAAGACCGCTTACTGTAAGGTCCCTCCTTGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGTTCCCCGCTATGTGCAGACCGAGGATGAACATGTCCCCTAAGGACATGATGAGCGATAGATCAAGCCAGTCGAGCGATGCTAGGATGGTCTCTAGCAGACAAAA
AAGGAAGCGCTTCATGCAGCAGTTAGAGACGTACGACCTGATTCGCAAATGTATGGAGGTTGCGACTGATCAGCTGAGAACCATTGTAGAATGGCCAGAGAAAGCTATGA
GCCGGGAGGACGTGATGCCGGTGCAGGTGATTGAGCTTTCGGAGTCCATCCCAAACCTTACTATAGCGGAGAAGAGTAAGTGCATCATGATAGTGAATCAGAAGGTGTCA
CTCAAAAGAAGCTTCATCAAGATGTTCGATTCGATGAAGACCGCTTACTGTAAGGTCCCTCCTTGGTAG
Protein sequenceShow/hide protein sequence
MEFPAMCRPRMNMSPKDMMSDRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSKCIMIVNQKVS
LKRSFIKMFDSMKTAYCKVPPW