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MELO3C012500 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C012500
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
Descriptionprotein RADIALIS-like 1
Genome locationchr01:17489017..17490802
RNA-Seq ExpressionMELO3C012500
SyntenyMELO3C012500
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036150.1 protein RADIALIS-like 1 [Cucumis melo var. makuwa]1.9e-38100Show/hide
Query:  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGDGNQ
        MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGDGNQ
Subjt:  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGDGNQ

KAE8645641.1 hypothetical protein Csa_020418 [Cucumis sativus]2.1e-3793.02Show/hide
Query:  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGDGNQDDDKI
        MASMSSHGSGTWTV QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSG GNQ++  I
Subjt:  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGDGNQDDDKI

XP_004151125.2 protein RADIALIS-like 1 [Cucumis sativus]6.2e-3797.53Show/hide
Query:  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGDGNQ
        MASMSSHGSGTWTV QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSG GNQ
Subjt:  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGDGNQ

XP_008447024.1 PREDICTED: protein RADIALIS-like 1 [Cucumis melo]1.9e-38100Show/hide
Query:  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGDGNQ
        MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGDGNQ
Subjt:  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGDGNQ

XP_022136064.1 protein RADIALIS-like 1 [Momordica charantia]6.8e-3682.65Show/hide
Query:  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSG---DGNQDDDKIKRMRNMKFH
        MASMSSHGS  WT KQNKAFEKALAVYDQDTP+RWLNVAKAVGGKTAEEVKRHY LLVEDVKFIESGQV FPYRTSG    GN   D  KRMRNMK +
Subjt:  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSG---DGNQDDDKIKRMRNMKFH

TrEMBL top hitse value%identityAlignment
A0A0A0K348 SANT domain-containing protein3.0e-3797.53Show/hide
Query:  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGDGNQ
        MASMSSHGSGTWTV QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSG GNQ
Subjt:  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGDGNQ

A0A1S3BFW6 protein RADIALIS-like 19.3e-39100Show/hide
Query:  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGDGNQ
        MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGDGNQ
Subjt:  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGDGNQ

A0A5A7SYK4 Protein RADIALIS-like 19.3e-39100Show/hide
Query:  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGDGNQ
        MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGDGNQ
Subjt:  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGDGNQ

A0A6J1C385 protein RADIALIS-like 13.3e-3682.65Show/hide
Query:  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSG---DGNQDDDKIKRMRNMKFH
        MASMSSHGS  WT KQNKAFEKALAVYDQDTP+RWLNVAKAVGGKTAEEVKRHY LLVEDVKFIESGQV FPYRTSG    GN   D  KRMRNMK +
Subjt:  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSG---DGNQDDDKIKRMRNMKFH

A0A6J1GJE9 protein RADIALIS-like 11.5e-3391.46Show/hide
Query:  MASMSSHGS-GTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGDGNQ
        MASMSSHGS GTWTVKQNKAFE+ALAVYDQDTPDRWLNVAKAV GKT EEV+RHYALLVEDVKFIESGQVPFPYRTSG G Q
Subjt:  MASMSSHGS-GTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGDGNQ

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 11.1e-2867.71Show/hide
Query:  ASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRTSG---DGNQDDDKIKRMRNMK
        +SMSS  SG+WT KQNKAFE+ALA YDQDTP+RW NVAK VGGKT EEVKRHY LLV+D+  IE+G VPFP YRTSG   +G    ++ KRMRNM+
Subjt:  ASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRTSG---DGNQDDDKIKRMRNMK

Q1A173 Protein RADIALIS-like 62.4e-2359.38Show/hide
Query:  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRT--SGDGNQDDDKIKRMRNMK
        MAS S      WT  QNK FE+ALAVYD+DTPDRW NVAKAVGGKT EEVKRHY +LVED+  IE+G+VP P Y+T  S   + +D   ++M+N+K
Subjt:  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRT--SGDGNQDDDKIKRMRNMK

Q58FS3 Transcription factor RADIALIS7.8e-2767.03Show/hide
Query:  SSHGSG-TWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRTSGDGNQDDDKIKRMRNMK
        S+ GSG  W+ K+NKAFE+ALAVYD+DTPDRW NVA+AV G+T EEVK+HY +LVED+K+IESG+VPFP YRT+G GN   D+ KR RN+K
Subjt:  SSHGSG-TWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRTSGDGNQDDDKIKRMRNMK

Q8GW75 Protein RADIALIS-like 51.1e-2359.18Show/hide
Query:  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRTSGDGNQ----DDDKIKRMRNMK
        MAS S   S +WT KQNK FE+ALAVYD+DTPDRW NVAKAVG K+AEEVKRHY +LVED+  IE   VP P Y+T   G++    DD  ++ M+NM+
Subjt:  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRTSGDGNQ----DDDKIKRMRNMK

Q9SIJ5 Protein RADIALIS-like 28.4e-2969.47Show/hide
Query:  SMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YR-TSGDGNQD--DDKIKRMRNMK
        SMSS+GSG+WTVKQNKAFE+ALAVYDQDTPDRW NVA+AVGGKT EE KR Y LLV D++ IE+G VPFP Y+ T+G+ N+    D+ KRMR+MK
Subjt:  SMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YR-TSGDGNQD--DDKIKRMRNMK

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 57.5e-2559.18Show/hide
Query:  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRTSGDGNQ----DDDKIKRMRNMK
        MAS S   S +WT KQNK FE+ALAVYD+DTPDRW NVAKAVG K+AEEVKRHY +LVED+  IE   VP P Y+T   G++    DD  ++ M+NM+
Subjt:  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRTSGDGNQ----DDDKIKRMRNMK

AT1G75250.1 RAD-like 63.2e-2368.42Show/hide
Query:  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRT
        MAS S      WT  QNK FE+ALAVYD+DTPDRW NVAKAVGGKT EEVKRHY +LVED+  IE+G+VP P Y+T
Subjt:  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRT

AT1G75250.2 RAD-like 61.7e-2459.38Show/hide
Query:  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRT--SGDGNQDDDKIKRMRNMK
        MAS S      WT  QNK FE+ALAVYD+DTPDRW NVAKAVGGKT EEVKRHY +LVED+  IE+G+VP P Y+T  S   + +D   ++M+N+K
Subjt:  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRT--SGDGNQDDDKIKRMRNMK

AT2G21650.1 Homeodomain-like superfamily protein6.0e-3069.47Show/hide
Query:  SMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YR-TSGDGNQD--DDKIKRMRNMK
        SMSS+GSG+WTVKQNKAFE+ALAVYDQDTPDRW NVA+AVGGKT EE KR Y LLV D++ IE+G VPFP Y+ T+G+ N+    D+ KRMR+MK
Subjt:  SMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YR-TSGDGNQD--DDKIKRMRNMK

AT4G39250.1 RAD-like 17.8e-3067.71Show/hide
Query:  ASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRTSG---DGNQDDDKIKRMRNMK
        +SMSS  SG+WT KQNKAFE+ALA YDQDTP+RW NVAK VGGKT EEVKRHY LLV+D+  IE+G VPFP YRTSG   +G    ++ KRMRNM+
Subjt:  ASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRTSG---DGNQDDDKIKRMRNMK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCGATGTCTTCTCATGGATCTGGTACATGGACTGTAAAGCAAAACAAGGCCTTTGAGAAGGCATTGGCAGTTTATGATCAAGACACACCTGATCGATGGCTAAA
TGTTGCAAAAGCTGTGGGTGGAAAAACTGCTGAAGAAGTCAAGAGGCATTACGCACTTCTTGTCGAGGATGTTAAGTTTATTGAGTCTGGCCAAGTTCCTTTCCCTTATC
GAACCTCCGGAGATGGTAACCAAGACGATGACAAAATTAAACGGATGAGGAACATGAAGTTCCACCATGAGATTTGA
mRNA sequenceShow/hide mRNA sequence
AACGGTGGGATTGTGGCAACCTAATCGAATAAATTTTTTCCCCATCAACCCTTTGCTTCCTACTTATAAAGAGCACCCATTGCTCATTCTCTGGCACACACATTATCGTT
TGTTTCCCACAGCAAACTTTTGAATCCCTCTTTCAAACCATTTTTTTTTTTCACTTCTTCAAAACAATTGAAGCTTCTCTTTATTTATCATCAATGGCTTCGATGTCTTC
TCATGGATCTGGTACATGGACTGTAAAGCAAAACAAGGCCTTTGAGAAGGCATTGGCAGTTTATGATCAAGACACACCTGATCGATGGCTAAATGTTGCAAAAGCTGTGG
GTGGAAAAACTGCTGAAGAAGTCAAGAGGCATTACGCACTTCTTGTCGAGGATGTTAAGTTTATTGAGTCTGGCCAAGTTCCTTTCCCTTATCGAACCTCCGGAGATGGT
AACCAAGACGATGACAAAATTAAACGGATGAGGAACATGAAGTTCCACCATGAGATTTGATGGTGAGAAGTAATGGAAGAATAAAGGAGGAAAGAAGAATGAATCTTTTG
CTCTAACTTATATATAAAATATGATATATTTCTTGTGTTTTGTTTTTTCAATGATATCTAATATTATTGATTTGTGTTAAGCTTTTAAGTTATTGGTTAATTCCATGTAT
TATTGTGCATCGACCTCTGAT
Protein sequenceShow/hide protein sequence
MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGDGNQDDDKIKRMRNMKFHHEI