CuGenDBv2

Gene ID	MELO3C014130
Organism	Cucumis melo DHL92 (Melon (DHL92) v4)
Description	RNA polymerase II elongation factor
Genome location	chr06:35076728..35078074
RNA-Seq Expression	MELO3C014130
Synteny	MELO3C014130
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7015562.1 hypothetical protein SDJN02_23198, partial [Cucurbita argyrosperma subsp. argyrosperma]

4.9e-95

84.19

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Query:  QTKDS-TAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDP
        +TKDS  AAH+VEIP E     QN+MISVI+ HPLRQISESSGHLLLLKLWQR+EHLFGLRIGRRETK+ESLKQQIFQLCC+FFLFHALSLTLL+TSSDP
Subjt:  QTKDS-TAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDP

Query:  IVCKKWWVPAVVIGATSGVFVIVVQLKLWMYWKARGQLQREKSENRALTRCAQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFIAISLLG
         VC KWWVP V +GATSGVFVIVVQLKLW+YWKA  QLQREKSENRALTRC QELRMKGSCFNLSKEPQIG+RMKSSSVEIKWGPLTW SRNF+ I LL 
Subjt:  IVCKKWWVPAVVIGATSGVFVIVVQLKLWMYWKARGQLQREKSENRALTRCAQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFIAISLLG

Query:  FSAIVFAASKFILCG
        FS IVF ASKFILCG
Subjt:  FSAIVFAASKFILCG

XP_004149573.1 uncharacterized protein LOC101219596 [Cucumis sativus]

2.8e-114

96.31

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Query:  MAQTKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSD
        MA+TKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSD
Subjt:  MAQTKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSD

Query:  PIVCKKWWVPAVVIGATSGVFVIVVQLKLWMYWKARGQLQREKSENRALTRCAQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFIAISLL
        PIVCKKWWVPAVVIGATSGVFVIVVQLKLWMYWKARGQLQ+EK+ENRALTRC QELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFI ISLL
Subjt:  PIVCKKWWVPAVVIGATSGVFVIVVQLKLWMYWKARGQLQREKSENRALTRCAQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFIAISLL

Query:  GFSAIVFAASKFILCGF
        GFSAI+F  SKFILCGF
Subjt:  GFSAIVFAASKFILCGF

XP_008449068.1 PREDICTED: uncharacterized protein LOC103491049 [Cucumis melo]

2.7e-117

100

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Query:  MAQTKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSD
        MAQTKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSD
Subjt:  MAQTKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSD

Query:  PIVCKKWWVPAVVIGATSGVFVIVVQLKLWMYWKARGQLQREKSENRALTRCAQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFIAISLL
        PIVCKKWWVPAVVIGATSGVFVIVVQLKLWMYWKARGQLQREKSENRALTRCAQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFIAISLL
Subjt:  PIVCKKWWVPAVVIGATSGVFVIVVQLKLWMYWKARGQLQREKSENRALTRCAQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFIAISLL

Query:  GFSAIVFAASKFILCGF
        GFSAIVFAASKFILCGF
Subjt:  GFSAIVFAASKFILCGF

XP_023553388.1 uncharacterized protein LOC111810817 [Cucurbita pepo subsp. pepo]

4.5e-96

84.11

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Query:  QTKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPI
        +T+DS AAH+VEIP E     QN+MISVI+ HPLRQISESSGHLLLLKLWQR+EHLFGLR+GRRETKMESLKQQIFQLCC+FFLFHALSLTLL+TSSDP 
Subjt:  QTKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPI

Query:  VCKKWWVPAVVIGATSGVFVIVVQLKLWMYWKARGQLQREKSENRALTRCAQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFIAISLLGF
        VC KWWVP V +GATSGVFVIVVQLKLW+YWKA  QLQREKSENRALTRC QELRMKGSCFNLSKEPQIG+RMKSSSVEIKWGPLTW SRNF+ I LL F
Subjt:  VCKKWWVPAVVIGATSGVFVIVVQLKLWMYWKARGQLQREKSENRALTRCAQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFIAISLLGF

Query:  SAIVFAASKFILCG
        S IVF ASKFILCG
Subjt:  SAIVFAASKFILCG

XP_038905570.1 uncharacterized protein LOC120091553 [Benincasa hispida]

5.6e-107

92.69

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Query:  MAQTKDSTAAHIVEIPVEQENHTQNL--MISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTS
        MA+TKDS  AHIVEIPVEQENHTQN   MISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTS
Subjt:  MAQTKDSTAAHIVEIPVEQENHTQNL--MISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTS

Query:  SDPIVCKKWWVPAVVIGATSGVFVIVVQLKLWMYWKARGQLQREKSENRALTRCAQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFIAIS
        SDP VCKKWWVPAV +GATSGVFVIVVQLKLW+YWKA GQLQREK+ENRALTRC QELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFI I 
Subjt:  SDPIVCKKWWVPAVVIGATSGVFVIVVQLKLWMYWKARGQLQREKSENRALTRCAQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFIAIS

Query:  LLGFSAIVFAASKFILCGF
        LLGFSAIVFAASKFILC F
Subjt:  LLGFSAIVFAASKFILCGF

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L2U7 Uncharacterized protein

1.3e-114

96.31

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Query:  MAQTKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSD
        MA+TKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSD
Subjt:  MAQTKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSD

Query:  PIVCKKWWVPAVVIGATSGVFVIVVQLKLWMYWKARGQLQREKSENRALTRCAQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFIAISLL
        PIVCKKWWVPAVVIGATSGVFVIVVQLKLWMYWKARGQLQ+EK+ENRALTRC QELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFI ISLL
Subjt:  PIVCKKWWVPAVVIGATSGVFVIVVQLKLWMYWKARGQLQREKSENRALTRCAQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFIAISLL

Query:  GFSAIVFAASKFILCGF
        GFSAI+F  SKFILCGF
Subjt:  GFSAIVFAASKFILCGF

A0A1S3BL81 uncharacterized protein LOC103491049

1.3e-117

100

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Query:  MAQTKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSD
        MAQTKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSD
Subjt:  MAQTKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSD

Query:  PIVCKKWWVPAVVIGATSGVFVIVVQLKLWMYWKARGQLQREKSENRALTRCAQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFIAISLL
        PIVCKKWWVPAVVIGATSGVFVIVVQLKLWMYWKARGQLQREKSENRALTRCAQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFIAISLL
Subjt:  PIVCKKWWVPAVVIGATSGVFVIVVQLKLWMYWKARGQLQREKSENRALTRCAQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFIAISLL

Query:  GFSAIVFAASKFILCGF
        GFSAIVFAASKFILCGF
Subjt:  GFSAIVFAASKFILCGF

A0A5A7VJ68 Uncharacterized protein

1.5e-76

99.32

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Query:  MESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAVVIGATSGVFVIVVQLKLWMYWKARGQLQREKSENRALTRCAQELRMKGSCFNLSKEP
        MESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAVVIGATSGVFVIVVQLKLWMYWKARGQLQREKSENRALTRC QELRMKGSCFNLSKEP
Subjt:  MESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAVVIGATSGVFVIVVQLKLWMYWKARGQLQREKSENRALTRCAQELRMKGSCFNLSKEP

Query:  QIGNRMKSSSVEIKWGPLTWFSRNFIAISLLGFSAIVFAASKFILCGF
        QIGNRMKSSSVEIKWGPLTWFSRNFIAISLLGFSAIVFAASKFILCGF
Subjt:  QIGNRMKSSSVEIKWGPLTWFSRNFIAISLLGFSAIVFAASKFILCGF

A0A6J1EWB5 uncharacterized protein LOC111438709

7.7e-94

83.72

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Query:  QTKDS-TAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDP
        +TKDS  AAH+VEIP E     QN+MISVI+ HPLRQISESSGHLLLLKLWQR+EHLFGLRIGRRETK+ESLKQQIFQLCC+FFLFHALSLTLL+TSSDP
Subjt:  QTKDS-TAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDP

Query:  IVCKKWWVPAVVIGATSGVFVIVVQLKLWMYWKARGQLQREKSENRALTRCAQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFIAISLLG
         VC KWWVP V +GATSGVFVIVVQLKLW+YWKA  QLQREKSENRALTRC QELRMKGSCFNLSKEPQIG+RMKSSSVEIKWGPLT  SRNF+ I LL 
Subjt:  IVCKKWWVPAVVIGATSGVFVIVVQLKLWMYWKARGQLQREKSENRALTRCAQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFIAISLLG

Query:  FSAIVFAASKFILCG
        FS IVF ASKFILCG
Subjt:  FSAIVFAASKFILCG

A0A6J1HN07 uncharacterized protein LOC111465114

3.4e-94

84.19

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Query:  QTKDSTAA-HIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDP
        +TKDS AA HIVEIP E     QN+MISVI+ HPLRQISESSGHLLLLKLWQR+EHLFGLRIGRRETK+ESLKQQIFQLCC+FFLFHALSLTLL+TSSDP
Subjt:  QTKDSTAA-HIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDP

Query:  IVCKKWWVPAVVIGATSGVFVIVVQLKLWMYWKARGQLQREKSENRALTRCAQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFIAISLLG
         VC KWWVP V +GATSGVFVIVVQLKLW+YWKA  QLQREKSENRALTR  QELRMKGSCFNLSKEPQIG+RMKSSSVEIKWGPLTW SRNF+ I LL 
Subjt:  IVCKKWWVPAVVIGATSGVFVIVVQLKLWMYWKARGQLQREKSENRALTRCAQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFIAISLLG

Query:  FSAIVFAASKFILCG
        FS IVF ASKFILCG
Subjt:  FSAIVFAASKFILCG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G12870.1 unknown protein

3.7e-24

35.26

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Query:  HPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLY-------TSSDPIVCKKWWVPAVVIGATSGVFVIVVQ
        HPL QI+++  H LLLK W ++E L   R+  +E++++S++++I QL  FFFLFH++SL LL+       +S+    CK+ W+P++    +S   +  V+
Subjt:  HPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLY-------TSSDPIVCKKWWVPAVVIGATSGVFVIVVQ

Query:  LKLWMYWKARGQLQREKSENRALTRCAQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPL-TWFSRNFIAISLLGFSAIVFAASKFILC
         K  +       L+REK + + L +C +EL+ KG  F+L KE     R KS  VE K  P+  W +R+F+ +     S +V A  + ILC
Subjt:  LKLWMYWKARGQLQREKSENRALTRCAQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPL-TWFSRNFIAISLLGFSAIVFAASKFILC

AT5G56120.1 unknown protein

1.0e-61

53.97

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Query:  MAQTKDSTAAHIVEIPVEQEN----HTQNL---------MISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLF
        MA TKDS   H+VEIPV++E+      Q L         ++ VIQ HPL +ISES GHLLLLKLWQR+E LF  R+  +E+++ES+K++IFQLCCFF +F
Subjt:  MAQTKDSTAAHIVEIPVEQEN----HTQNL---------MISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLF

Query:  HALSLTLLYTSS---------DPIVCKKWWVPAVVIGATSGVFVIVVQLKLWMYWKARGQLQREKSENRALTRCAQELRMKGSCFNLSKEPQIGNRMKSS
        H    TL+Y+SS            VCKKWW+P+ V  ATS V V +VQ KL+++WK    + RE+++NR LTRC  ELRMKGS F+LSKEP  G RMKSS
Subjt:  HALSLTLLYTSS---------DPIVCKKWWVPAVVIGATSGVFVIVVQLKLWMYWKARGQLQREKSENRALTRCAQELRMKGSCFNLSKEPQIGNRMKSS

Query:  SVEIKWGPLTWFSRNFIAISLLGFSAIVFAASKFILCGF
        SVEIKW P+TWFS+  I I LL  + + F  SKFILCGF
Subjt:  SVEIKWGPLTWFSRNFIAISLLGFSAIVFAASKFILCGF

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCCCAAACCAAAGATTCTACCGCTGCCCACATAGTTGAAATCCCAGTAGAACAAGAAAACCACACGCAAAACCTCATGATCTCTGTAATTCAACACCACCCATTGCG
ACAAATTTCCGAAAGCTCCGGCCATTTATTACTCTTAAAGCTTTGGCAAAGAGACGAGCATCTCTTCGGTCTCAGAATCGGACGTCGAGAGACAAAAATGGAGTCTTTAA
AGCAACAAATCTTTCAACTCTGTTGCTTCTTCTTCCTCTTCCATGCCCTCTCTCTCACTCTCTTGTACACTTCCTCTGATCCCATTGTGTGTAAGAAATGGTGGGTTCCG
GCTGTGGTGATAGGGGCGACGTCCGGGGTGTTCGTGATCGTGGTGCAGCTGAAATTGTGGATGTATTGGAAAGCAAGAGGGCAGTTACAGAGGGAGAAGAGTGAAAACAG
AGCACTTACAAGATGTGCTCAAGAACTTAGAATGAAAGGATCTTGCTTTAATTTGTCTAAAGAACCACAAATTGGGAATAGAATGAAGAGTTCTAGTGTGGAGATTAAAT
GGGGGCCTCTCACTTGGTTTTCAAGGAATTTCATTGCCATTTCTCTTCTTGGCTTTTCTGCCATTGTTTTCGCTGCTTCCAAGTTCATTCTTTGCGGCTTTTAA

mRNA sequence

Show/hide mRNA sequence

AATTCCAAACTCACAATCATCAAAGTTCAAATCTCCAATGGCCCAAACCAAAGATTCTACCGCTGCCCACATAGTTGAAATCCCAGTAGAACAAGAAAACCACACGCAAA
ACCTCATGATCTCTGTAATTCAACACCACCCATTGCGACAAATTTCCGAAAGCTCCGGCCATTTATTACTCTTAAAGCTTTGGCAAAGAGACGAGCATCTCTTCGGTCTC
AGAATCGGACGTCGAGAGACAAAAATGGAGTCTTTAAAGCAACAAATCTTTCAACTCTGTTGCTTCTTCTTCCTCTTCCATGCCCTCTCTCTCACTCTCTTGTACACTTC
CTCTGATCCCATTGTGTGTAAGAAATGGTGGGTTCCGGCTGTGGTGATAGGGGCGACGTCCGGGGTGTTCGTGATCGTGGTGCAGCTGAAATTGTGGATGTATTGGAAAG
CAAGAGGGCAGTTACAGAGGGAGAAGAGTGAAAACAGAGCACTTACAAGATGTGCTCAAGAACTTAGAATGAAAGGATCTTGCTTTAATTTGTCTAAAGAACCACAAATT
GGGAATAGAATGAAGAGTTCTAGTGTGGAGATTAAATGGGGGCCTCTCACTTGGTTTTCAAGGAATTTCATTGCCATTTCTCTTCTTGGCTTTTCTGCCATTGTTTTCGC
TGCTTCCAAGTTCATTCTTTGCGGCTTTTAATTGCCATTTCTCAGGTGGTTGAAGAATTAATATGTAGTGGAGGATGAAGCAAGATGGGTCCGACATAAAAACTATCATT
AGGGAAGGCAAGGGAGGCTCCATTTTTGTAGAATCTTTACAAATTATGAAGAGAAAGATGGTGAAGAAAGGATTGAAGTACACAAGAAGATTAAGTGTTGGTTTGAAGAG
AACTAAAAATCAGTGTTAATTAAGCAACACTGCTTGTGTCCAAATTTTTGTTTTGGCTTTCTAGGCATAGTTAATGAACTTGCCAATTTTGAAATTGGCCATATGTAACT
TTGTGGCTAATTTTGTTTATTTATTTATTTATTTATTTATACACCCCCGTTCCTTATTATTATCTATATAAAAGTTCCTATTTATACATTCAGAT

Protein sequence

Show/hide protein sequence

MAQTKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVP
AVVIGATSGVFVIVVQLKLWMYWKARGQLQREKSENRALTRCAQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFIAISLLGFSAIVFAASKFILCGF

MELO3C014130 (gene) of Melon (DHL92) v4 genome