CuGenDBv2

Gene ID	MELO3C014176
Organism	Cucumis melo DHL92 (Melon (DHL92) v4)
Description	30S ribosomal protein S6
Genome location	chr06:35850589..35855484
RNA-Seq Expression	MELO3C014176
Synteny	MELO3C014176
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005737 - cytoplasm (cellular component) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0070181 - small ribosomal subunit rRNA binding (molecular function)
InterPro domains	IPR000529 - Ribosomal protein S6 IPR014717 - Translation elongation factor EF1B/ribosomal protein S6 IPR035980 - Ribosomal protein S6 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008449133.1 PREDICTED: 30S ribosomal protein S6 [Cucumis melo]

3.9e-75

100

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Query:  MPLYDVMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
        MPLYDVMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
Subjt:  MPLYDVMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ

Query:  YGLEFLSEDDDKSGPGQFSRLNLMGDEDDDDDDDDDDDEEYDVEQEDTKAE
        YGLEFLSEDDDKSGPGQFSRLNLMGDEDDDDDDDDDDDEEYDVEQEDTKAE
Subjt:  YGLEFLSEDDDKSGPGQFSRLNLMGDEDDDDDDDDDDDEEYDVEQEDTKAE

XP_011650517.1 uncharacterized protein LOC101218568 [Cucumis sativus]

1.3e-65

89.54

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Query:  MPLYDVMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
        MPLYDVM LMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
Subjt:  MPLYDVMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ

Query:  YGLEFLSEDDDKSGPGQFSRLNLMG--DEDDDDDDDDDDDEEYDVEQEDTKAE
        +GLEFL EDDDK+G  + SRLNLMG  DED+D+D+DDDDDEEY+VE +DTKAE
Subjt:  YGLEFLSEDDDKSGPGQFSRLNLMG--DEDDDDDDDDDDDEEYDVEQEDTKAE

XP_022143220.1 uncharacterized protein LOC111013137 [Momordica charantia]

2.3e-59

82.89

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Query:  MPLYDVMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
        MPLYD MLLMKPHVKKEALLDLVARVGKHVFRRNGVV DIKSFGVVQLGYGIKKLDGR+YQGQLMQMTMMATPNMNKEL YLNKEDR+LRW+LVKHRD +
Subjt:  MPLYDVMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ

Query:  YGLEFLSEDDDKSGPGQFSRLNLMGDED-DDDDDDDDDDEEYDVEQEDTKAE
        YGLEFLSEDD K    +F R+ +MGD+D D++DDDDD+DEEYDVEQE++K E
Subjt:  YGLEFLSEDDDKSGPGQFSRLNLMGDED-DDDDDDDDDDEEYDVEQEDTKAE

XP_023539684.1 uncharacterized protein LOC111800294 [Cucurbita pepo subsp. pepo]

4.0e-59

82.35

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Query:  MPLYDVMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
        MPLYD MLLMKPHV+KEALLDLVARVGKHVFRRNGVV DIKSFGVVQLGYGIKKLDGRY+QGQLMQMTMMATPNMNKEL YLNKEDRLLRW+LVKHRD +
Subjt:  MPLYDVMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ

Query:  YGLEFLSEDDDKSGPGQFSRLNLMGDE--DDDDDDDDDDDEEYDVEQEDTKAE
        YGLEFLSEDD K+   +F R N++GD+  D++DDDDDDDDEEYDVEQE+   E
Subjt:  YGLEFLSEDDDKSGPGQFSRLNLMGDE--DDDDDDDDDDDEEYDVEQEDTKAE

XP_038905169.1 uncharacterized protein LOC120091279 [Benincasa hispida]

6.8e-59

81.82

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Query:  MPLYDVMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
        MPLYD MLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKL+GRYYQGQLMQMTMMATPN+NKEL YLNKEDRLLRW+LVKHRD +
Subjt:  MPLYDVMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ

Query:  YGLEFLSEDDDKSGPGQFSRLNLMGDEDDDD---DDDDDDDEEYDVEQEDTKAE
        YGLEFLSE+D KS  G+F RL+++ D+D+D+   DDDD+DDEEY+VEQE  +AE
Subjt:  YGLEFLSEDDDKSGPGQFSRLNLMGDEDDDD---DDDDDDDEEYDVEQEDTKAE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L2X6 Uncharacterized protein

6.2e-66

89.54

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Query:  MPLYDVMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
        MPLYDVM LMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
Subjt:  MPLYDVMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ

Query:  YGLEFLSEDDDKSGPGQFSRLNLMG--DEDDDDDDDDDDDEEYDVEQEDTKAE
        +GLEFL EDDDK+G  + SRLNLMG  DED+D+D+DDDDDEEY+VE +DTKAE
Subjt:  YGLEFLSEDDDKSGPGQFSRLNLMG--DEDDDDDDDDDDDEEYDVEQEDTKAE

A0A1S3BLC8 30S ribosomal protein S6

1.9e-75

100

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Query:  MPLYDVMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
        MPLYDVMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
Subjt:  MPLYDVMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ

Query:  YGLEFLSEDDDKSGPGQFSRLNLMGDEDDDDDDDDDDDEEYDVEQEDTKAE
        YGLEFLSEDDDKSGPGQFSRLNLMGDEDDDDDDDDDDDEEYDVEQEDTKAE
Subjt:  YGLEFLSEDDDKSGPGQFSRLNLMGDEDDDDDDDDDDDEEYDVEQEDTKAE

A0A6J1CN79 uncharacterized protein LOC111013137

1.1e-59

82.89

Show/hide

Query:  MPLYDVMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
        MPLYD MLLMKPHVKKEALLDLVARVGKHVFRRNGVV DIKSFGVVQLGYGIKKLDGR+YQGQLMQMTMMATPNMNKEL YLNKEDR+LRW+LVKHRD +
Subjt:  MPLYDVMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ

Query:  YGLEFLSEDDDKSGPGQFSRLNLMGDED-DDDDDDDDDDEEYDVEQEDTKAE
        YGLEFLSEDD K    +F R+ +MGD+D D++DDDDD+DEEYDVEQE++K E
Subjt:  YGLEFLSEDDDKSGPGQFSRLNLMGDED-DDDDDDDDDDEEYDVEQEDTKAE

A0A6J1FEF6 uncharacterized protein LOC111443208

9.5e-59

81.7

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Query:  MPLYDVMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
        MPLYD MLLMKPHV+KEALLDLVARVGKHVFRRNGVV DIKSFGVVQLGYGIKKLDGRY+QGQLMQMTMMATPNMNKEL YLNKEDRLLRW+LVKHRD +
Subjt:  MPLYDVMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ

Query:  YGLEFLSEDDDKSGPGQFSRLNLMGDE--DDDDDDDDDDDEEYDVEQEDTKAE
        YGLEFLSEDD K+   +F R  ++GD+  D++DDDDDDDDEEYDVEQE+   E
Subjt:  YGLEFLSEDDDKSGPGQFSRLNLMGDE--DDDDDDDDDDDEEYDVEQEDTKAE

A0A6J1KXT7 uncharacterized protein LOC111498530

4.4e-56

79.47

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Query:  MPLYDVMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
        MPLYD MLLMKPHV+KEALLDLVARVGKHVFRRNGVV D+KSFGVVQLGYGIKKLDGRY+QGQLMQMTMMATPNMNKEL YLNKEDRLLRW+LVKHRD +
Subjt:  MPLYDVMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ

Query:  YGLEFLSEDDDKSGPGQFSRLNLMGDEDDDDDDDDDDDEEYDVEQEDTKAE
        YGLEFLSEDD K+   +F R +++GD+D D++DDDDDD+  DVEQE  + E
Subjt:  YGLEFLSEDDDKSGPGQFSRLNLMGDEDDDDDDDDDDDEEYDVEQEDTKAE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G18760.1 Translation elongation factor EF1B/ribosomal protein S6 family protein

2.6e-40

61.48

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Query:  MPLYDVMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
        MPLYD MLL KP ++KE L+DLVAR+GKHV+ RNGV+ +IKSFG V+LGYGI+KLDGR+YQGQLMQ+TMM TPNMNKEL YLNKED+LLRW+LVKHRD +
Subjt:  MPLYDVMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ

Query:  YGLEFLSEDDDKSGPGQFSRLNLMGDEDDDDDDDD
         G     ++D  + P + +  +L      D+DD++
Subjt:  YGLEFLSEDDDKSGPGQFSRLNLMGDEDDDDDDDD

AT3G18760.2 Translation elongation factor EF1B/ribosomal protein S6 family protein

1.1e-35

57.78

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Query:  MPLYDVMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
        MPLYD MLL KP ++KE L+DLVAR+GKHV+ RNGV+ +IKSFG V+LGYGI+KLDGR+Y     Q+TMM TPNMNKEL YLNKED+LLRW+LVKHRD +
Subjt:  MPLYDVMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ

Query:  YGLEFLSEDDDKSGPGQFSRLNLMGDEDDDDDDDD
         G     ++D  + P + +  +L      D+DD++
Subjt:  YGLEFLSEDDDKSGPGQFSRLNLMGDEDDDDDDDD

Sequences

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CDS sequence

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ATGCCTCTTTACGATGTTATGCTTTTGATGAAACCCCATGTAAAGAAGGAGGCTTTGTTGGATTTGGTTGCTAGAGTGGGCAAGCATGTGTTCAGGAGAAACGGGGTTGT
CTGTGACATTAAGTCATTTGGTGTTGTCCAATTGGGTTATGGTATTAAGAAGCTTGATGGAAGATACTATCAGGGCCAACTTATGCAGATGACGATGATGGCTACTCCCA
ACATGAACAAGGAGTTGTTTTACTTAAACAAGGAAGATCGATTGTTGCGTTGGATTTTAGTGAAGCACCGTGACAGACAATATGGCCTGGAATTCCTTAGTGAAGATGAT
GACAAGAGTGGACCTGGCCAATTTAGTCGACTTAACTTGATGGGTGATGAAGATGATGACGACGACGACGACGATGACGACGATGAAGAATACGATGTGGAACAAGAAGA
TACAAAAGCAGAGTGA

mRNA sequence

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TTTGTCAAATTGGACTTTTACGTGCGTTGTTGGGGGATTGAACCTGAAGGAGAAAACCATTTTTCCATAAACCCTATTTCACCTTCAGCCACACACCCTCCCACTAATAG
CCACTGCATCCCGCCCGGACACACGCCGCTCGTGCCCGACACAGTATCAGCGGCGGCCGCTATATGCTGCACTCTTATCTGCCGGATTCTCATCTTTCGGACGAACTCGA
CGCCTCTCCCTCCCTCTCACACTCTCTCGCTTCTCCAAGCAATCGGAGCTACTTATCTCCGTTGTTGTTATCTCAGAAATAGAAACAGTGGTTCAGCCCCCCTGTTGGTG
AGATCCTACCGTCCCTCACGCCTACTGCCGCTCATTTTTTAAATTCCAAGGAGTTAAGTGAAGGAAACGGCGCAGGCTGCCATTTCTCTCAAAAGTTCGAAATAGGAACT
TTAGTTCTAAAGAACAGAAGATTAAGATGCCTCTTTACGATGTTATGCTTTTGATGAAACCCCATGTAAAGAAGGAGGCTTTGTTGGATTTGGTTGCTAGAGTGGGCAAG
CATGTGTTCAGGAGAAACGGGGTTGTCTGTGACATTAAGTCATTTGGTGTTGTCCAATTGGGTTATGGTATTAAGAAGCTTGATGGAAGATACTATCAGGGCCAACTTAT
GCAGATGACGATGATGGCTACTCCCAACATGAACAAGGAGTTGTTTTACTTAAACAAGGAAGATCGATTGTTGCGTTGGATTTTAGTGAAGCACCGTGACAGACAATATG
GCCTGGAATTCCTTAGTGAAGATGATGACAAGAGTGGACCTGGCCAATTTAGTCGACTTAACTTGATGGGTGATGAAGATGATGACGACGACGACGACGATGACGACGAT
GAAGAATACGATGTGGAACAAGAAGATACAAAAGCAGAGTGAATTTTATTTTACCAGTCTCTATTTTCATGGCCCAACTTTCAACTTGTTGACCTCTTGTACCATTTTTG
GATTCTAGACAGACAAATAAAGAGGTCCATAGTTTCTTTAGTTGTCCTTGTCCATATTATCTGTTTCTCAGAAACAAAGATCCATAAATGTCTTTTACTCAAACTTCCAT
TAGAATGGGATGTTTTCCAGGTCTTGGATTTCAGCTCTAAATGAAAAGTTCAAGAAATGAATATCCTTGTTTGTCTTTTAAAGCTGTTCTACTTTATTCTTGCTTTTATA
TTGAATGAAACTGGAGCAAGTATGAGGTTTGATGAAGATCTGGTTGAGATCATCTAGGTTTGTTTCAAGTGATGTTCAATTCAAATATGGTTATGGTTGTGGTTGTGGTT
CT

Protein sequence

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MPLYDVMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQYGLEFLSEDD
DKSGPGQFSRLNLMGDEDDDDDDDDDDDEEYDVEQEDTKAE

MELO3C014176 (gene) of Melon (DHL92) v4 genome