; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MELO3C014564 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C014564
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
Descriptionprotein LATERAL ROOT PRIMORDIUM 1-like
Genome locationchr05:1367261..1368183
RNA-Seq ExpressionMELO3C014564
SyntenyMELO3C014564
Gene Ontology termsGO:0009734 - auxin-activated signaling pathway (biological process)
GO:0009851 - auxin biosynthetic process (biological process)
GO:0045893 - positive regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR006510 - Zinc finger, lateral root primordium type 1
IPR007818 - SHI protein family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061772.1 protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 [Cucumis melo var. makuwa]1.1e-159100Show/hide
Query:  VVATTRRLPSDSGAFADWAAPTSSAARAAPPDDLSLGFNAAPSAAPPPGPPVSMWSAAAQRSLNYGLGSEMGMVGLRDVYVVAPASSFNQNPHQHDVNLL
        VVATTRRLPSDSGAFADWAAPTSSAARAAPPDDLSLGFNAAPSAAPPPGPPVSMWSAAAQRSLNYGLGSEMGMVGLRDVYVVAPASSFNQNPHQHDVNLL
Subjt:  VVATTRRLPSDSGAFADWAAPTSSAARAAPPDDLSLGFNAAPSAAPPPGPPVSMWSAAAQRSLNYGLGSEMGMVGLRDVYVVAPASSFNQNPHQHDVNLL

Query:  SDPHSLAVSNPATALGVGVGVGVIPLLTAGPCVGVEEENLFGNRSSNRGGGIQFQQSTQHYLKKTPSGSLDHVSGTNNELIGGGIGGSGGLASSSSATTT
        SDPHSLAVSNPATALGVGVGVGVIPLLTAGPCVGVEEENLFGNRSSNRGGGIQFQQSTQHYLKKTPSGSLDHVSGTNNELIGGGIGGSGGLASSSSATTT
Subjt:  SDPHSLAVSNPATALGVGVGVGVIPLLTAGPCVGVEEENLFGNRSSNRGGGIQFQQSTQHYLKKTPSGSLDHVSGTNNELIGGGIGGSGGLASSSSATTT

Query:  CQDCGNQAKKDCSHRRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAVTATAAADGSSASTSGAKKPRLIPSQTTSHTSTSNTTPPRSLDTSSSHQ
        CQDCGNQAKKDCSHRRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAVTATAAADGSSASTSGAKKPRLIPSQTTSHTSTSNTTPPRSLDTSSSHQ
Subjt:  CQDCGNQAKKDCSHRRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAVTATAAADGSSASTSGAKKPRLIPSQTTSHTSTSNTTPPRSLDTSSSHQ

XP_008449658.1 PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 [Cucumis melo]3.0e-130100Show/hide
Query:  MWSAAAQRSLNYGLGSEMGMVGLRDVYVVAPASSFNQNPHQHDVNLLSDPHSLAVSNPATALGVGVGVGVIPLLTAGPCVGVEEENLFGNRSSNRGGGIQ
        MWSAAAQRSLNYGLGSEMGMVGLRDVYVVAPASSFNQNPHQHDVNLLSDPHSLAVSNPATALGVGVGVGVIPLLTAGPCVGVEEENLFGNRSSNRGGGIQ
Subjt:  MWSAAAQRSLNYGLGSEMGMVGLRDVYVVAPASSFNQNPHQHDVNLLSDPHSLAVSNPATALGVGVGVGVIPLLTAGPCVGVEEENLFGNRSSNRGGGIQ

Query:  FQQSTQHYLKKTPSGSLDHVSGTNNELIGGGIGGSGGLASSSSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAVTAT
        FQQSTQHYLKKTPSGSLDHVSGTNNELIGGGIGGSGGLASSSSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAVTAT
Subjt:  FQQSTQHYLKKTPSGSLDHVSGTNNELIGGGIGGSGGLASSSSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAVTAT

Query:  AAADGSSASTSGAKKPRLIPSQTTSHTSTSNTTPPRSLDTSSSHQ
        AAADGSSASTSGAKKPRLIPSQTTSHTSTSNTTPPRSLDTSSSHQ
Subjt:  AAADGSSASTSGAKKPRLIPSQTTSHTSTSNTTPPRSLDTSSSHQ

XP_008449659.1 PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like isoform X2 [Cucumis melo]3.0e-130100Show/hide
Query:  MWSAAAQRSLNYGLGSEMGMVGLRDVYVVAPASSFNQNPHQHDVNLLSDPHSLAVSNPATALGVGVGVGVIPLLTAGPCVGVEEENLFGNRSSNRGGGIQ
        MWSAAAQRSLNYGLGSEMGMVGLRDVYVVAPASSFNQNPHQHDVNLLSDPHSLAVSNPATALGVGVGVGVIPLLTAGPCVGVEEENLFGNRSSNRGGGIQ
Subjt:  MWSAAAQRSLNYGLGSEMGMVGLRDVYVVAPASSFNQNPHQHDVNLLSDPHSLAVSNPATALGVGVGVGVIPLLTAGPCVGVEEENLFGNRSSNRGGGIQ

Query:  FQQSTQHYLKKTPSGSLDHVSGTNNELIGGGIGGSGGLASSSSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAVTAT
        FQQSTQHYLKKTPSGSLDHVSGTNNELIGGGIGGSGGLASSSSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAVTAT
Subjt:  FQQSTQHYLKKTPSGSLDHVSGTNNELIGGGIGGSGGLASSSSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAVTAT

Query:  AAADGSSASTSGAKKPRLIPSQTTSHTSTSNTTPPRSLDTSSSHQ
        AAADGSSASTSGAKKPRLIPSQTTSHTSTSNTTPPRSLDTSSSHQ
Subjt:  AAADGSSASTSGAKKPRLIPSQTTSHTSTSNTTPPRSLDTSSSHQ

XP_008449660.1 PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like isoform X3 [Cucumis melo]3.0e-130100Show/hide
Query:  MWSAAAQRSLNYGLGSEMGMVGLRDVYVVAPASSFNQNPHQHDVNLLSDPHSLAVSNPATALGVGVGVGVIPLLTAGPCVGVEEENLFGNRSSNRGGGIQ
        MWSAAAQRSLNYGLGSEMGMVGLRDVYVVAPASSFNQNPHQHDVNLLSDPHSLAVSNPATALGVGVGVGVIPLLTAGPCVGVEEENLFGNRSSNRGGGIQ
Subjt:  MWSAAAQRSLNYGLGSEMGMVGLRDVYVVAPASSFNQNPHQHDVNLLSDPHSLAVSNPATALGVGVGVGVIPLLTAGPCVGVEEENLFGNRSSNRGGGIQ

Query:  FQQSTQHYLKKTPSGSLDHVSGTNNELIGGGIGGSGGLASSSSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAVTAT
        FQQSTQHYLKKTPSGSLDHVSGTNNELIGGGIGGSGGLASSSSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAVTAT
Subjt:  FQQSTQHYLKKTPSGSLDHVSGTNNELIGGGIGGSGGLASSSSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAVTAT

Query:  AAADGSSASTSGAKKPRLIPSQTTSHTSTSNTTPPRSLDTSSSHQ
        AAADGSSASTSGAKKPRLIPSQTTSHTSTSNTTPPRSLDTSSSHQ
Subjt:  AAADGSSASTSGAKKPRLIPSQTTSHTSTSNTTPPRSLDTSSSHQ

XP_023512287.1 protein LATERAL ROOT PRIMORDIUM 1-like, partial [Cucurbita pepo subsp. pepo]1.9e-12983.77Show/hide
Query:  VVATTRRLPSDSGAFADWAAPTSSAARAAPPDDLSLGFNAAPSAAPPPGPPVSMWS--AAAQRSLNYGLGSEMGMVGLRDVYVVAPASSFNQNPHQHDVN
        VVATTRRLPSDSGAFADWAAP+SSA R APPDDLSLGFNAAP+ APP GPP  +WS  AAAQRSLNYGLGSEMGMVGLRDVYVVAPA+SFN NPH HD N
Subjt:  VVATTRRLPSDSGAFADWAAPTSSAARAAPPDDLSLGFNAAPSAAPPPGPPVSMWS--AAAQRSLNYGLGSEMGMVGLRDVYVVAPASSFNQNPHQHDVN

Query:  LLSDPHSLAVSNPATALGVGVGVGVIPLLTAGPCVGVEEENLFGNRSSNRGGGIQF----QQSTQHYLKKTPSGSLDH----VSGTNNELIGGGIGGSGG
        L+SD HSLA SN ATALGVGVGVGVIPLLTAGPC+GVEE+NL G+RS +RGGGIQ     QQSTQHYLKKTPS SLDH     SGTNN+LIGGGIG  GG
Subjt:  LLSDPHSLAVSNPATALGVGVGVGVIPLLTAGPCVGVEEENLFGNRSSNRGGGIQF----QQSTQHYLKKTPSGSLDH----VSGTNNELIGGGIGGSGG

Query:  LASSSSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAVTATAAADGSSASTSGAKKPRLIPSQTTSHTSTSNTTPPRS
        LASSSSATTTCQDCGNQAKKDCS  RCRTCCRSRGFDCATHVKSTWVPAARRRERQLMA+T T AADGSS S SG KKPRLI SQTTSHTSTSNTTPP S
Subjt:  LASSSSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAVTATAAADGSSASTSGAKKPRLIPSQTTSHTSTSNTTPPRS

Query:  LDTSSSHQ
        +DTSSSHQ
Subjt:  LDTSSSHQ

TrEMBL top hitse value%identityAlignment
A0A0A0KF01 Uncharacterized protein1.7e-12697.96Show/hide
Query:  MWSAAAQRSLNYGLGSEMGMVGLRDVYVVAPASSFNQNPHQHDVNLLSDPHSLAVSNPATALGVGVGVGVIPLLTAGPCVGVEEENLFGNRSSNRGGGIQ
        MWSAAAQRSLNYG GSEMGMVGLRDVYVVAPASSFNQNP QHDVNLLSDPHSLAVSNPATALGVGVGVGVIPLLTAGPC+GVEEEN FGNR SNRGGGIQ
Subjt:  MWSAAAQRSLNYGLGSEMGMVGLRDVYVVAPASSFNQNPHQHDVNLLSDPHSLAVSNPATALGVGVGVGVIPLLTAGPCVGVEEENLFGNRSSNRGGGIQ

Query:  FQQSTQHYLKKTPSGSLDHVSGTNNELIGGGIGGSGGLASSSSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAVTAT
        FQQSTQHYLKKTPSGSLDHVSGTNNELIGGGIGGSGGLASSSSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAVTAT
Subjt:  FQQSTQHYLKKTPSGSLDHVSGTNNELIGGGIGGSGGLASSSSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAVTAT

Query:  AAADGSSASTSGAKKPRLIPSQTTSHTSTSNTTPPRSLDTSSSHQ
        AAADGSSASTSGAKKPRLIPSQTTSHTSTSNTTPPRSLDTSSSHQ
Subjt:  AAADGSSASTSGAKKPRLIPSQTTSHTSTSNTTPPRSLDTSSSHQ

A0A1S3BMI2 protein LATERAL ROOT PRIMORDIUM 1-like isoform X21.4e-130100Show/hide
Query:  MWSAAAQRSLNYGLGSEMGMVGLRDVYVVAPASSFNQNPHQHDVNLLSDPHSLAVSNPATALGVGVGVGVIPLLTAGPCVGVEEENLFGNRSSNRGGGIQ
        MWSAAAQRSLNYGLGSEMGMVGLRDVYVVAPASSFNQNPHQHDVNLLSDPHSLAVSNPATALGVGVGVGVIPLLTAGPCVGVEEENLFGNRSSNRGGGIQ
Subjt:  MWSAAAQRSLNYGLGSEMGMVGLRDVYVVAPASSFNQNPHQHDVNLLSDPHSLAVSNPATALGVGVGVGVIPLLTAGPCVGVEEENLFGNRSSNRGGGIQ

Query:  FQQSTQHYLKKTPSGSLDHVSGTNNELIGGGIGGSGGLASSSSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAVTAT
        FQQSTQHYLKKTPSGSLDHVSGTNNELIGGGIGGSGGLASSSSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAVTAT
Subjt:  FQQSTQHYLKKTPSGSLDHVSGTNNELIGGGIGGSGGLASSSSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAVTAT

Query:  AAADGSSASTSGAKKPRLIPSQTTSHTSTSNTTPPRSLDTSSSHQ
        AAADGSSASTSGAKKPRLIPSQTTSHTSTSNTTPPRSLDTSSSHQ
Subjt:  AAADGSSASTSGAKKPRLIPSQTTSHTSTSNTTPPRSLDTSSSHQ

A0A1S3BMJ0 protein LATERAL ROOT PRIMORDIUM 1-like isoform X11.4e-130100Show/hide
Query:  MWSAAAQRSLNYGLGSEMGMVGLRDVYVVAPASSFNQNPHQHDVNLLSDPHSLAVSNPATALGVGVGVGVIPLLTAGPCVGVEEENLFGNRSSNRGGGIQ
        MWSAAAQRSLNYGLGSEMGMVGLRDVYVVAPASSFNQNPHQHDVNLLSDPHSLAVSNPATALGVGVGVGVIPLLTAGPCVGVEEENLFGNRSSNRGGGIQ
Subjt:  MWSAAAQRSLNYGLGSEMGMVGLRDVYVVAPASSFNQNPHQHDVNLLSDPHSLAVSNPATALGVGVGVGVIPLLTAGPCVGVEEENLFGNRSSNRGGGIQ

Query:  FQQSTQHYLKKTPSGSLDHVSGTNNELIGGGIGGSGGLASSSSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAVTAT
        FQQSTQHYLKKTPSGSLDHVSGTNNELIGGGIGGSGGLASSSSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAVTAT
Subjt:  FQQSTQHYLKKTPSGSLDHVSGTNNELIGGGIGGSGGLASSSSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAVTAT

Query:  AAADGSSASTSGAKKPRLIPSQTTSHTSTSNTTPPRSLDTSSSHQ
        AAADGSSASTSGAKKPRLIPSQTTSHTSTSNTTPPRSLDTSSSHQ
Subjt:  AAADGSSASTSGAKKPRLIPSQTTSHTSTSNTTPPRSLDTSSSHQ

A0A1S3BN66 protein LATERAL ROOT PRIMORDIUM 1-like isoform X31.4e-130100Show/hide
Query:  MWSAAAQRSLNYGLGSEMGMVGLRDVYVVAPASSFNQNPHQHDVNLLSDPHSLAVSNPATALGVGVGVGVIPLLTAGPCVGVEEENLFGNRSSNRGGGIQ
        MWSAAAQRSLNYGLGSEMGMVGLRDVYVVAPASSFNQNPHQHDVNLLSDPHSLAVSNPATALGVGVGVGVIPLLTAGPCVGVEEENLFGNRSSNRGGGIQ
Subjt:  MWSAAAQRSLNYGLGSEMGMVGLRDVYVVAPASSFNQNPHQHDVNLLSDPHSLAVSNPATALGVGVGVGVIPLLTAGPCVGVEEENLFGNRSSNRGGGIQ

Query:  FQQSTQHYLKKTPSGSLDHVSGTNNELIGGGIGGSGGLASSSSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAVTAT
        FQQSTQHYLKKTPSGSLDHVSGTNNELIGGGIGGSGGLASSSSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAVTAT
Subjt:  FQQSTQHYLKKTPSGSLDHVSGTNNELIGGGIGGSGGLASSSSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAVTAT

Query:  AAADGSSASTSGAKKPRLIPSQTTSHTSTSNTTPPRSLDTSSSHQ
        AAADGSSASTSGAKKPRLIPSQTTSHTSTSNTTPPRSLDTSSSHQ
Subjt:  AAADGSSASTSGAKKPRLIPSQTTSHTSTSNTTPPRSLDTSSSHQ

A0A5A7V0Q8 Protein LATERAL ROOT PRIMORDIUM 1-like isoform X15.1e-160100Show/hide
Query:  VVATTRRLPSDSGAFADWAAPTSSAARAAPPDDLSLGFNAAPSAAPPPGPPVSMWSAAAQRSLNYGLGSEMGMVGLRDVYVVAPASSFNQNPHQHDVNLL
        VVATTRRLPSDSGAFADWAAPTSSAARAAPPDDLSLGFNAAPSAAPPPGPPVSMWSAAAQRSLNYGLGSEMGMVGLRDVYVVAPASSFNQNPHQHDVNLL
Subjt:  VVATTRRLPSDSGAFADWAAPTSSAARAAPPDDLSLGFNAAPSAAPPPGPPVSMWSAAAQRSLNYGLGSEMGMVGLRDVYVVAPASSFNQNPHQHDVNLL

Query:  SDPHSLAVSNPATALGVGVGVGVIPLLTAGPCVGVEEENLFGNRSSNRGGGIQFQQSTQHYLKKTPSGSLDHVSGTNNELIGGGIGGSGGLASSSSATTT
        SDPHSLAVSNPATALGVGVGVGVIPLLTAGPCVGVEEENLFGNRSSNRGGGIQFQQSTQHYLKKTPSGSLDHVSGTNNELIGGGIGGSGGLASSSSATTT
Subjt:  SDPHSLAVSNPATALGVGVGVGVIPLLTAGPCVGVEEENLFGNRSSNRGGGIQFQQSTQHYLKKTPSGSLDHVSGTNNELIGGGIGGSGGLASSSSATTT

Query:  CQDCGNQAKKDCSHRRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAVTATAAADGSSASTSGAKKPRLIPSQTTSHTSTSNTTPPRSLDTSSSHQ
        CQDCGNQAKKDCSHRRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAVTATAAADGSSASTSGAKKPRLIPSQTTSHTSTSNTTPPRSLDTSSSHQ
Subjt:  CQDCGNQAKKDCSHRRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAVTATAAADGSSASTSGAKKPRLIPSQTTSHTSTSNTTPPRSLDTSSSHQ

SwissProt top hitse value%identityAlignment
F4KH89 Protein SHI RELATED SEQUENCE 81.4e-1866.67Show/hide
Query:  GGIGGSGGLASSSSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAVT
        GG GGSGG+        +CQD GNQAKKDCSH RCRTCC+SRGF+C+THV+STWVPA +RRERQ    T
Subjt:  GGIGGSGGLASSSSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAVT

O65517 Protein SHI RELATED SEQUENCE 21.9e-1843.33Show/hide
Query:  SSNRGGGIQFQQSTQHYLKKTPSGSLDHVSGTNNELIGGGIGGSGGLASSSSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHVKSTWVPAARRRE
        SS +   I  +Q   H+       SLD   G         I  S    SS S T +C+DCGNQAKKDC+H RCRTCC+SRGFDC+THV+STW+P ARRRE
Subjt:  SSNRGGGIQFQQSTQHYLKKTPSGSLDHVSGTNNELIGGGIGGSGGLASSSSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHVKSTWVPAARRRE

Query:  RQLMAVTATAAADGSS----ASTSGAKKPRLIPSQTTSHTSTSNTTPPRS
        RQ     +T+   G S    A   G+  P+     T   TS+S+  P  S
Subjt:  RQLMAVTATAAADGSS----ASTSGAKKPRLIPSQTTSHTSTSNTTPPRS

Q94CK9 Protein LATERAL ROOT PRIMORDIUM 11.3e-4048.09Show/hide
Query:  MGMVGLRDVYVVAPASSFNQNPHQHDVNLLSDPHSLAVSNPATALGVGVGVGVIPLLTAG-PCVGVEEENLFGNRSSNRGGGIQFQQSTQHYLKKTPSGS
        MGMVGLRDV++VAPA       H  +  ++S    +   N   A    +GVGVIPLLTAG P   VE+ ++    ++ R         TQ+         
Subjt:  MGMVGLRDVYVVAPASSFNQNPHQHDVNLLSDPHSLAVSNPATALGVGVGVGVIPLLTAG-PCVGVEEENLFGNRSSNRGGGIQFQQSTQHYLKKTPSGS

Query:  LDHVSGTNNELIGGGIGGSGGLASSSSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAVTATAAADGSSASTSGAKKP
          H   TN   +G     SG   S +S T TCQDCGNQAKK+C  RRCRTCC+SRGFDC+THVKSTWV AARRRERQ+M   A   A  S +++SG KKP
Subjt:  LDHVSGTNNELIGGGIGGSGGLASSSSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAVTATAAADGSSASTSGAKKP

Query:  RLIPS------QTTSHTSTSNTTPPRSLDTSSSHQ
        R++ S      Q TSHTSTSN TPP+S +TSSS Q
Subjt:  RLIPS------QTTSHTSTSNTTPPRSLDTSSSHQ

Q9FXH7 Protein SHI RELATED SEQUENCE 71.6e-1761.33Show/hide
Query:  SGGLASSSSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHVKSTWVPAARRRER--QLMAVTATAAADGSS
        +GG   +      CQDCGNQAKKDC H RCRTCC+SRGFDC THVKSTWV AA+RRER  QL  + A    D +S
Subjt:  SGGLASSSSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHVKSTWVPAARRRER--QLMAVTATAAADGSS

Q9SD40 Protein SHI RELATED SEQUENCE 17.6e-2068.57Show/hide
Query:  GGGIGGSGGLASSSSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAVT
        GG  GGSGG+        +CQDCGNQAKKDCSH RCRTCC+SRGF+C+THV+STWVPAA+RRERQ    T
Subjt:  GGGIGGSGGLASSSSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAVT

Arabidopsis top hitse value%identityAlignment
AT3G51060.1 Lateral root primordium (LRP) protein-related5.4e-2168.57Show/hide
Query:  GGGIGGSGGLASSSSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAVT
        GG  GGSGG+        +CQDCGNQAKKDCSH RCRTCC+SRGF+C+THV+STWVPAA+RRERQ    T
Subjt:  GGGIGGSGGLASSSSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAVT

AT5G12330.1 Lateral root primordium (LRP) protein-related9.5e-4248.09Show/hide
Query:  MGMVGLRDVYVVAPASSFNQNPHQHDVNLLSDPHSLAVSNPATALGVGVGVGVIPLLTAG-PCVGVEEENLFGNRSSNRGGGIQFQQSTQHYLKKTPSGS
        MGMVGLRDV++VAPA       H  +  ++S    +   N   A    +GVGVIPLLTAG P   VE+ ++    ++ R         TQ+         
Subjt:  MGMVGLRDVYVVAPASSFNQNPHQHDVNLLSDPHSLAVSNPATALGVGVGVGVIPLLTAG-PCVGVEEENLFGNRSSNRGGGIQFQQSTQHYLKKTPSGS

Query:  LDHVSGTNNELIGGGIGGSGGLASSSSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAVTATAAADGSSASTSGAKKP
          H   TN   +G     SG   S +S T TCQDCGNQAKK+C  RRCRTCC+SRGFDC+THVKSTWV AARRRERQ+M   A   A  S +++SG KKP
Subjt:  LDHVSGTNNELIGGGIGGSGGLASSSSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAVTATAAADGSSASTSGAKKP

Query:  RLIPS------QTTSHTSTSNTTPPRSLDTSSSHQ
        R++ S      Q TSHTSTSN TPP+S +TSSS Q
Subjt:  RLIPS------QTTSHTSTSNTTPPRSLDTSSSHQ

AT5G12330.2 Lateral root primordium (LRP) protein-related9.5e-4248.09Show/hide
Query:  MGMVGLRDVYVVAPASSFNQNPHQHDVNLLSDPHSLAVSNPATALGVGVGVGVIPLLTAG-PCVGVEEENLFGNRSSNRGGGIQFQQSTQHYLKKTPSGS
        MGMVGLRDV++VAPA       H  +  ++S    +   N   A    +GVGVIPLLTAG P   VE+ ++    ++ R         TQ+         
Subjt:  MGMVGLRDVYVVAPASSFNQNPHQHDVNLLSDPHSLAVSNPATALGVGVGVGVIPLLTAG-PCVGVEEENLFGNRSSNRGGGIQFQQSTQHYLKKTPSGS

Query:  LDHVSGTNNELIGGGIGGSGGLASSSSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAVTATAAADGSSASTSGAKKP
          H   TN   +G     SG   S +S T TCQDCGNQAKK+C  RRCRTCC+SRGFDC+THVKSTWV AARRRERQ+M   A   A  S +++SG KKP
Subjt:  LDHVSGTNNELIGGGIGGSGGLASSSSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAVTATAAADGSSASTSGAKKP

Query:  RLIPS------QTTSHTSTSNTTPPRSLDTSSSHQ
        R++ S      Q TSHTSTSN TPP+S +TSSS Q
Subjt:  RLIPS------QTTSHTSTSNTTPPRSLDTSSSHQ

AT5G12330.3 Lateral root primordium (LRP) protein-related1.9e-4248.1Show/hide
Query:  MGMVGLRDVYVVAPASSFNQNPHQHDVNLLSDPHSLAVSNPATALGVGVGVGVIPLLTAG-PCVGVEEENLFGNRSSNRGGGIQFQQSTQHYLKKTPSGS
        MGMVGLRDV++VAPA       H  +  ++S    +   N   A    +GVGVIPLLTAG P   VE+ ++    ++ R         TQ+         
Subjt:  MGMVGLRDVYVVAPASSFNQNPHQHDVNLLSDPHSLAVSNPATALGVGVGVGVIPLLTAG-PCVGVEEENLFGNRSSNRGGGIQFQQSTQHYLKKTPSGS

Query:  LDHVSGTNNELIGGGIGGSGGLASSSSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAVTATAAADGSSASTSGAKKP
          H   TN   +G     SG   S +S T TCQDCGNQAKK+C  RRCRTCC+SRGFDC+THVKSTWV AARRRERQ+M   A   A  S +++SG KKP
Subjt:  LDHVSGTNNELIGGGIGGSGGLASSSSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAVTATAAADGSSASTSGAKKP

Query:  RLIPS------QTTSHTSTSNTTPPRSLDTSSSHQGT
        R++ S      Q TSHTSTSN TPP+S +TSSS QG+
Subjt:  RLIPS------QTTSHTSTSNTTPPRSLDTSSSHQGT

AT5G12330.4 Lateral root primordium (LRP) protein-related4.5e-5247.53Show/hide
Query:  VATTRR--LP-SDSGAFADWAAPTSSAARAAPPDDLSLGFNAAPS------------AAPPPGPPVSMWSAAAQRSLNYGLGS-----EMGMVGLRDVYV
        VATTRR  LP SDSGAF DWAA T++ +RA   +DLSLGFNA  S            A  P  PP S        S+ YGL S     EMGMVGLRDV++
Subjt:  VATTRR--LP-SDSGAFADWAAPTSSAARAAPPDDLSLGFNAAPS------------AAPPPGPPVSMWSAAAQRSLNYGLGS-----EMGMVGLRDVYV

Query:  VAPASSFNQNPHQHDVNLLSDPHSLAVSNPATALGVGVGVGVIPLLTAG-PCVGVEEENLFGNRSSNRGGGIQFQQSTQHYLKKTPSGSLDHVSGTNNEL
        VAPA       H  +  ++S    +   N   A    +GVGVIPLLTAG P   VE+ ++    ++ R         TQ+           H   TN   
Subjt:  VAPASSFNQNPHQHDVNLLSDPHSLAVSNPATALGVGVGVGVIPLLTAG-PCVGVEEENLFGNRSSNRGGGIQFQQSTQHYLKKTPSGSLDHVSGTNNEL

Query:  IGGGIGGSGGLASSSSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAVTATAAADGSSASTSGAKKPRLIPS------
        +G     SG   S +S T TCQDCGNQAKK+C  RRCRTCC+SRGFDC+THVKSTWV AARRRERQ+M   A   A  S +++SG KKPR++ S      
Subjt:  IGGGIGGSGGLASSSSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAVTATAAADGSSASTSGAKKPRLIPS------

Query:  QTTSHTSTSNTTPPRSLDTSSSHQ
        Q TSHTSTSN TPP+S +TSSS Q
Subjt:  QTTSHTSTSNTTPPRSLDTSSSHQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTTGTGGCTACTACAAGGCGGTTACCTTCTGATTCCGGCGCTTTTGCAGATTGGGCGGCTCCCACTTCCTCAGCCGCCCGTGCTGCTCCTCCTGATGATCTCTCT
CTTGGCTTCAATGCCGCTCCCTCCGCCGCACCTCCTCCTGGACCTCCCGTCTCCATGTGGTCCGCTGCTGCTCAGCGTTCTCTCAATTACGGCCTTGGATCCGAG
ATGGGAATGGTTGGTCTTCGTGATGTTTACGTCGTTGCTCCGGCTTCTTCTTTCAACCAAAATCCTCACCAACACGATGTTAATCTTCTCTCCGATCCTCATTCT
CTTGCTGTTTCCAATCCTGCCACAGCTCTCGGCGTTGGTGTAGGCGTCGGGGTTATTCCCCTACTTACCGCTGGTCCCTGCGTTGGAGTTGAGGAGGAGAATCTT
TTCGGTAATCGGAGTAGTAACAGAGGTGGAGGGATTCAGTTTCAACAATCGACTCAACATTATTTAAAGAAAACGCCGTCGGGTTCTCTCGATCATGTTTCCGGT
ACTAATAATGAGTTAATCGGTGGTGGAATCGGCGGTTCCGGTGGTCTGGCTTCGTCGTCGTCGGCGACTACGACGTGTCAGGACTGTGGTAACCAAGCGAAGAAA
GATTGTAGTCACAGACGGTGTAGAACTTGCTGTAGAAGTCGAGGGTTCGATTGTGCTACTCACGTGAAGAGCACGTGGGTACCTGCTGCTCGACGGAGAGAACGA
CAACTTATGGCGGTTACTGCTACCGCCGCTGCCGATGGCTCCTCCGCTTCCACCTCCGGCGCGAAGAAACCGCGGCTAATTCCCTCGCAAACCACTTCCCATACC
TCCACTTCCAACACCACTCCTCCGAGAAGCCTCGATACGAGCTCCAGCCATCAAGGTACCAGAAAACTCTTCCGAATTTAG
mRNA sequenceShow/hide mRNA sequence
CAGTTGTGGCTACTACAAGGCGGTTACCTTCTGATTCCGGCGCTTTTGCAGATTGGGCGGCTCCCACTTCCTCAGCCGCCCGTGCTGCTCCTCCTGATGATCTCT
CTCTTGGCTTCAATGCCGCTCCCTCCGCCGCACCTCCTCCTGGACCTCCCGTCTCCATGTGGTCCGCTGCTGCTCAGCGTTCTCTCAATTACGGCCTTGGATCCG
AGATGGGAATGGTTGGTCTTCGTGATGTTTACGTCGTTGCTCCGGCTTCTTCTTTCAACCAAAATCCTCACCAACACGATGTTAATCTTCTCTCCGATCCTCATT
CTCTTGCTGTTTCCAATCCTGCCACAGCTCTCGGCGTTGGTGTAGGCGTCGGGGTTATTCCCCTACTTACCGCTGGTCCCTGCGTTGGAGTTGAGGAGGAGAATC
TTTTCGGTAATCGGAGTAGTAACAGAGGTGGAGGGATTCAGTTTCAACAATCGACTCAACATTATTTAAAGAAAACGCCGTCGGGTTCTCTCGATCATGTTTCCG
GTACTAATAATGAGTTAATCGGTGGTGGAATCGGCGGTTCCGGTGGTCTGGCTTCGTCGTCGTCGGCGACTACGACGTGTCAGGACTGTGGTAACCAAGCGAAGA
AAGATTGTAGTCACAGACGGTGTAGAACTTGCTGTAGAAGTCGAGGGTTCGATTGTGCTACTCACGTGAAGAGCACGTGGGTACCTGCTGCTCGACGGAGAGAAC
GACAACTTATGGCGGTTACTGCTACCGCCGCTGCCGATGGCTCCTCCGCTTCCACCTCCGGCGCGAAGAAACCGCGGCTAATTCCCTCGCAAACCACTTCCCATA
CCTCCACTTCCAACACCACTCCTCCGAGAAGCCTCGATACGAGCTCCAGCCATCAAGGTACCAGAAAACTCTTCCGAATTTAG
Protein sequenceShow/hide protein sequence
VVATTRRLPSDSGAFADWAAPTSSAARAAPPDDLSLGFNAAPSAAPPPGPPVSMWSAAAQRSLNYGLGSEMGMVGLRDVYVVAPASSFNQNPHQHDVNLLSDPHS
LAVSNPATALGVGVGVGVIPLLTAGPCVGVEEENLFGNRSSNRGGGIQFQQSTQHYLKKTPSGSLDHVSGTNNELIGGGIGGSGGLASSSSATTTCQDCGNQAKK
DCSHRRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAVTATAAADGSSASTSGAKKPRLIPSQTTSHTSTSNTTPPRSLDTSSSHQGTRKLFRI