; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MELO3C015580 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C015580
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
Descriptionarabinogalactan peptide 13-like
Genome locationchr02:3017578..3018186
RNA-Seq ExpressionMELO3C015580
SyntenyMELO3C015580
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0031225 - anchored component of membrane (cellular component)
InterPro domainsIPR039281 - Arabinogalactan protein 3/12/13/14/21


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8653471.1 hypothetical protein Csa_007150 [Cucumis sativus]1.8e-1084.48Show/hide
Query:  MEAANK---FLMITMMVVVVMVISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPL
        MEAA K    LM+TMMVVV++ ISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPL
Subjt:  MEAANK---FLMITMMVVVVMVISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPL
KAG7023913.1 Arabinogalactan peptide 14, partial [Cucurbita argyrosperma subsp. argyrosperma]6.7e-0569.39Show/hide
Query:  MMVVVVMVISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLLFGLF
        M+ +VV  ++ SS IVAAQEAPAPSPASDASLS+PTLMAS  PL  G F
Subjt:  MMVVVVMVISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLLFGLF
XP_011660059.1 arabinogalactan protein 13 [Cucumis sativus]3.0e-1383.08Show/hide
Query:  MEAANK---FLMITMMVVVVMVISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLLFGLFFI
        MEAA K    LM+TMMVVV++ ISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPL+FG FFI
Subjt:  MEAANK---FLMITMMVVVVMVISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLLFGLFFI
XP_022988237.1 arabinogalactan peptide 13-like [Cucurbita maxima]2.5e-0467.35Show/hide
Query:  MMVVVVMVISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLLFGLF
        M+ +VV  ++ SS IVAAQEAPAPSPASDA LS+PTLMAS  PL  G F
Subjt:  MMVVVVMVISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLLFGLF
XP_038879727.1 arabinogalactan protein 13-like [Benincasa hispida]2.1e-0661.67Show/hide
Query:  MEAANKFLMITMMVVVVMVISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLLFGLF
        MEA     ++ M++VVV++  SSS+IVAAQEAPAPSPASDA +S+PTLMAS  PL+ G F
Subjt:  MEAANKFLMITMMVVVVMVISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLLFGLF
TrEMBL top hitse value%identityAlignment
A0A0A0LWU9 Uncharacterized protein1.5e-1383.08Show/hide
Query:  MEAANK---FLMITMMVVVVMVISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLLFGLFFI
        MEAA K    LM+TMMVVV++ ISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPL+FG FFI
Subjt:  MEAANK---FLMITMMVVVVMVISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLLFGLFFI
A0A6J1JCI6 arabinogalactan peptide 13-like1.2e-0467.35Show/hide
Query:  MMVVVVMVISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLLFGLF
        M+ +VV  ++ SS IVAAQEAPAPSPASDA LS+PTLMAS  PL  G F
Subjt:  MMVVVVMVISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLLFGLF
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G56540.1 arabinogalactan protein 147.9e-0446.55Show/hide
Query:  ANKFLMITMMVVVVMVISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLLFGLFF
        A K  +  +++V V+  S+    VAA +APAPSP SDAS  IPT  AS   + FG FF
Subjt:  ANKFLMITMMVVVVMVISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLLFGLFF

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGCAGCAAACAAGTTTCTAATGATAACAATGATGGTGGTTGTTGTAATGGTCATTTCATCATCATCCGCCATTGTTGCAGCTCAAGAAGCTCCAGCTCCAAGCCC
AGCTTCTGATGCCTCTCTTTCTATTCCAACGTTAATGGCTTCTTTTGTTCCTCTTCTTTTTGGATTGTTTTTCATCTAA
mRNA sequenceShow/hide mRNA sequence
CAAACCACCAAATCAAACCAACCTGTAAAAAACCTTAAATAATAAAAGAAATTCCCATTTCTTTTGCTATAAATACCAACACACTCTTCATCATTTCCCTTACCATTTTC
AAAAAAAAGAAAAGAAAAGAAAAACAAAGAGAAACCCATTTGAAAAAAAGAAAAAAAAAAGTCCTCAACTTTCAAGGATTTTTTCATCAAAATGGAAGCAGCAAACAAGT
TTCTAATGATAACAATGATGGTGGTTGTTGTAATGGTCATTTCATCATCATCCGCCATTGTTGCAGCTCAAGAAGCTCCAGCTCCAAGCCCAGCTTCTGATGCCTCTCTT
TCTATTCCAACGTTAATGGCTTCTTTTGTTCCTCTTCTTTTTGGATTGTTTTTCATCTAATAATTTTCTTCCCCTTTCCTCTTTTTTCTTTTCTTTCAATTTACCTATGA
ATATATATATATATATATAAATGTGTGTGTGTGTGTGTGTGTTTTTCTTTATTTAGGGGATGATGATTGAATTTGTTTGGGTGTGAGATTTGGGATTATTATTGATTTTA
TGTATATCTTTCCATATTAATTTAATGTTATGTTGTTATTCTATATTATTGTTCTCATT
Protein sequenceShow/hide protein sequence
MEAANKFLMITMMVVVVMVISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLLFGLFFI