; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MELO3C016181 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C016181
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionPhotosystem II 10 kDa polypeptide, chloroplastic
Genome locationchr07:20033730..20035931
RNA-Seq ExpressionMELO3C016181
SyntenyMELO3C016181
Gene Ontology termsGO:0010270 - photosystem II oxygen evolving complex assembly (biological process)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0009654 - photosystem II oxygen evolving complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR006814 - Photosystem II PsbR


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062951.1 photosystem II 10 kDa polypeptide [Cucumis melo var. makuwa]9.3e-4098.88Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGY
        MAAS+MTSVSLKPAPFTVEKSARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGY
Subjt:  MAASVMTSVSLKPAPFTVEKSARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGY

XP_004147752.1 photosystem II 10 kDa polypeptide, chloroplastic [Cucumis sativus]1.3e-3694.38Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGY
        MAASVMTSVSLKPAPFTVEKSA GLPSLAR S SFKVVASGGKKIKTDKPYGINGSMNLRDG+DASGRK KGKGVYQFVDKYGANVDGY
Subjt:  MAASVMTSVSLKPAPFTVEKSARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGY

XP_008451826.1 PREDICTED: photosystem II 10 kDa polypeptide, chloroplastic [Cucumis melo]4.2e-40100Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGY
        MAASVMTSVSLKPAPFTVEKSARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGY
Subjt:  MAASVMTSVSLKPAPFTVEKSARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGY

XP_022136536.1 photosystem II 10 kDa polypeptide, chloroplastic [Momordica charantia]5.7e-3794.38Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGY
        MAASVMTSVSLKPAPFTVEKSA+GLPSLAR SASFKV ASGGKKIKTDKPYGINGSMNLRDG+DASGRK KGKGVYQFVDKYGANVDGY
Subjt:  MAASVMTSVSLKPAPFTVEKSARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGY

XP_038876356.1 photosystem II 10 kDa polypeptide, chloroplastic-like [Benincasa hispida]1.3e-3693.26Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGY
        MAASVMTSVSLKPAPFTVEKSA+GLPSLARNS  FKV ASGGKKIKTDKPYGINGSMNLRDG+DASGRK KGKGVYQFVDKYGANVDGY
Subjt:  MAASVMTSVSLKPAPFTVEKSARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGY

TrEMBL top hitse value%identityAlignment
A0A0A0KXH3 Photosystem II 10 kDa polypeptide, chloroplastic6.1e-3794.38Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGY
        MAASVMTSVSLKPAPFTVEKSA GLPSLAR S SFKVVASGGKKIKTDKPYGINGSMNLRDG+DASGRK KGKGVYQFVDKYGANVDGY
Subjt:  MAASVMTSVSLKPAPFTVEKSARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGY

A0A1S3BSD1 Photosystem II 10 kDa polypeptide, chloroplastic2.0e-40100Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGY
        MAASVMTSVSLKPAPFTVEKSARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGY
Subjt:  MAASVMTSVSLKPAPFTVEKSARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGY

A0A5A7VB86 Photosystem II 10 kDa polypeptide, chloroplastic4.5e-4098.88Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGY
        MAAS+MTSVSLKPAPFTVEKSARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGY
Subjt:  MAASVMTSVSLKPAPFTVEKSARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGY

A0A5D3CXX1 Photosystem II 10 kDa polypeptide, chloroplastic2.0e-40100Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGY
        MAASVMTSVSLKPAPFTVEKSARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGY
Subjt:  MAASVMTSVSLKPAPFTVEKSARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGY

A0A6J1C3S3 Photosystem II 10 kDa polypeptide, chloroplastic2.7e-3794.38Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGY
        MAASVMTSVSLKPAPFTVEKSA+GLPSLAR SASFKV ASGGKKIKTDKPYGINGSMNLRDG+DASGRK KGKGVYQFVDKYGANVDGY
Subjt:  MAASVMTSVSLKPAPFTVEKSARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGY

SwissProt top hitse value%identityAlignment
P06183 Photosystem II 10 kDa polypeptide, chloroplastic8.8e-3382.22Show/hide
Query:  MAASVMTSVSLKPAPFTVEK-SARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGY
        MA++VM+S+SLKP  FT+EK S +GLPSLAR+S+SFKVVASG KK+KTDKPYGINGSM LRDGVDASGRKPKGKGVYQ+VDKYGANVDGY
Subjt:  MAASVMTSVSLKPAPFTVEK-SARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGY

P27202 Photosystem II 10 kDa polypeptide, chloroplastic1.4e-3080.22Show/hide
Query:  MAASVM-TSVSLKPAPFTVEK-SARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGY
        MAASVM +SV+LKPA FTVEK +ARGLPSL R   SFK+VASG KKIKTDKP+GINGSM+LRDGVDASGRK KG GVY++VDKYGANVDGY
Subjt:  MAASVM-TSVSLKPAPFTVEK-SARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGY

P49108 Photosystem II 10 kDa polypeptide, chloroplastic3.1e-3080.43Show/hide
Query:  MAASVM-TSVSLKPAPFTVEK-SARGLPSLARNS-ASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGY
        MAASVM +SV+LKPA FTVEK SARGLPSL R S +SF++VASG KKIKTDKP+G+NGSM+LRDGVDASGRK KG GVY+FVDKYGANVDGY
Subjt:  MAASVM-TSVSLKPAPFTVEK-SARGLPSLARNS-ASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGY

Q40163 Photosystem II 10 kDa polypeptide, chloroplastic2.6e-3281.11Show/hide
Query:  MAASVMTSVSLKPAPFTVEK-SARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGY
        MA++VM+S+SLKP  FT+EK S +GLPSL R+S+SFKVVASG KK+KTDKPYGINGSM LRDGVDASGRKPKGKGVYQ+VDKYGANVDGY
Subjt:  MAASVMTSVSLKPAPFTVEK-SARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGY

Q40519 Photosystem II 10 kDa polypeptide, chloroplastic5.7e-3281.11Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSA-RGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGY
        MA++VM   SLKPAPF+VEK+A +GLPSLAR+S+SF+V ASG KK+KTDKPYGINGSM+LRDGVDASGRK KGKGVYQFVDKYGANVDGY
Subjt:  MAASVMTSVSLKPAPFTVEKSA-RGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGY

Arabidopsis top hitse value%identityAlignment
AT1G79040.1 photosystem II subunit R1.0e-3180.22Show/hide
Query:  MAASVM-TSVSLKPAPFTVEK-SARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGY
        MAASVM +SV+LKPA FTVEK +ARGLPSL R   SFK+VASG KKIKTDKP+GINGSM+LRDGVDASGRK KG GVY++VDKYGANVDGY
Subjt:  MAASVM-TSVSLKPAPFTVEK-SARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGCCTCAGTGATGACCTCAGTGAGTCTTAAACCAGCTCCCTTCACCGTCGAGAAATCGGCGAGAGGTCTTCCATCTCTGGCGAGAAACTCCGCCTCCTTCAAGGT
CGTCGCCAGTGGTGGGAAGAAGATCAAGACCGACAAACCATACGGAATCAATGGTTCGATGAATTTGAGGGATGGAGTTGATGCATCGGGAAGGAAGCCCAAGGGAAAGG
GAGTGTACCAATTTGTCGACAAGTACGGAGCCAATGTCGATGGTTACAGGTGA
mRNA sequenceShow/hide mRNA sequence
ATCACACTTCTCAGATTATCAAGCTCTGAGTTCCGTTTTGCGCCATTGCAAATTTTCGAGCTAGAGAAGAAGAAGAAGAAGAAGAAGCTTATCGATCGGAAATGGCGGCC
TCAGTGATGACCTCAGTGAGTCTTAAACCAGCTCCCTTCACCGTCGAGAAATCGGCGAGAGGTCTTCCATCTCTGGCGAGAAACTCCGCCTCCTTCAAGGTCGTCGCCAG
TGGTGGGAAGAAGATCAAGACCGACAAACCATACGGAATCAATGGTTCGATGAATTTGAGGGATGGAGTTGATGCATCGGGAAGGAAGCCCAAGGGAAAGGGAGTGTACC
AATTTGTCGACAAGTACGGAGCCAATGTCGATGGTTACAGGTGAAACATCTGGCTCTGATTTTGTTCTTAGTTTTCTGAATTTGAAAATCAACCTGAATTCAAAGCGTTA
TTGTTCATGTTTAATTTGAAAATCTTTCATTATCATGTATCAACAAATTAAACCTTACGTGTATTGTATTCTCCACTTTTGCAGTCCCATCTACGATACCAAAGACTGGT
CTCCAACTGGTGATGTCTATGTTGGTGGTACTACTGGGTTAGCCATTTGGGCAGTGACTTTGGCTGGTCTTCTTGCTGGAGGTGCTCTTCTTGTGTACAACACCAGTGCT
TTGGTGCAGTAAGGTGGAGGGAAAGTTAAAAGTCTTGTTTTTTCTTCACATTAGTTTTTGTAGCATGTTATTATTATGAACATACATTATTATTAAGAAATTCTGTGTGT
AATTATCTGGATAATTGCTTCATAAATGCTTGGTAAGATAATTCTTCTCGTTCCCATCTTTTATCTTCTTGTTTTTTTCCTTTACTTTGTATATTAGGGTTGGCACCGAG
TTTGAAATCACCTTTTGGATATAGTACTATTTTAAGTCTAAAAATTCTTCTACTAATTAGAGTAGTTTTTTGAGTGTTTATTGTTAATCGAGGTGTAGTGTTTTTAGCTT
AAAATATATACCTTGATCCGAATGTTTAAATGTT
Protein sequenceShow/hide protein sequence
MAASVMTSVSLKPAPFTVEKSARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGYR