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MELO3C016461 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C016461
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Genome locationchr06:28052771..28053265
RNA-Seq ExpressionMELO3C016461
SyntenyMELO3C016461
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035629.1 retrotransposon protein [Cucumis melo var. makuwa]5.3e-3350.94Show/hide
Query:  AETFTDVGSNLPEGYEGFSADDGNDMEIPMMYSQGIDMLSDDIMGTRPDRSTEGRTGSSGSKRKQGGQAVETMEIIRNVMEHSNDRLKAIVEWSNVQRQD
        AE F D+GSN P GY+ F AD   D   P MYS G++M  DD+M TR  R +E R  SSGSKRK+ G A ++ +I+R  +E+ N++L  I EW  +QRQD
Subjt:  AETFTDVGSNLPEGYEGFSADDGNDMEIPMMYSQGIDMLSDDIMGTRPDRSTEGRTGSSGSKRKQGGQAVETMEIIRNVMEHSNDRLKAIVEWSNVQRQD

Query:  ASTRLVEVVRQLQRILELSRYDRVCSMQILMCNVDDMKAFLDILDELKLDYCTIIFQDN
        AS    E+VRQL+ I +L+  DR   M ILM NVDDMKAFL++ D +K  YC+II Q+N
Subjt:  ASTRLVEVVRQLQRILELSRYDRVCSMQILMCNVDDMKAFLDILDELKLDYCTIIFQDN

KAA0041444.1 retrotransposon protein [Cucumis melo var. makuwa]2.1e-3453.16Show/hide
Query:  ETFTDVGSNLPEGYEGFSADDGNDMEIPMMYSQGIDMLSDDIMGTRPDRSTEGRTGSSGSKRKQGGQAVETMEIIRNVMEHSNDRLKAIVEWSNVQRQDA
        ++F DVGSN P GY+ F AD   DM+ P MY+QG++M SDD+MGTR     E R  SSGSKRK+ G + ++ +IIR ++E+ N++L  I EW  +QRQDA
Subjt:  ETFTDVGSNLPEGYEGFSADDGNDMEIPMMYSQGIDMLSDDIMGTRPDRSTEGRTGSSGSKRKQGGQAVETMEIIRNVMEHSNDRLKAIVEWSNVQRQDA

Query:  STRLVEVVRQLQRILELSRYDRVCSMQILMCNVDDMKAFLDILDELKLDYCTIIFQDN
        S    EVVRQL+ I EL+  DR   M+ILM NVDDMKAFLD+ + +K  YC+II Q+N
Subjt:  STRLVEVVRQLQRILELSRYDRVCSMQILMCNVDDMKAFLDILDELKLDYCTIIFQDN

KAA0048280.1 retrotransposon protein [Cucumis melo var. makuwa]1.4e-3350.94Show/hide
Query:  AETFTDVGSNLPEGYEGFSADDGNDMEIPMMYSQGIDMLSDDIMGTRPDRSTEGRTGSSGSKRKQGGQAVETMEIIRNVMEHSNDRLKAIVEWSNVQRQD
        AE+F D+GSN P GY+ F+ADD +D +   MYS G++M  DD+M TR  R +E R  SSGSKRK+ G A ++ +I+R  ME+ N++L  I EW  +QRQD
Subjt:  AETFTDVGSNLPEGYEGFSADDGNDMEIPMMYSQGIDMLSDDIMGTRPDRSTEGRTGSSGSKRKQGGQAVETMEIIRNVMEHSNDRLKAIVEWSNVQRQD

Query:  ASTRLVEVVRQLQRILELSRYDRVCSMQILMCNVDDMKAFLDILDELKLDYCTIIFQDN
        A+    E+VRQL+ I EL+  DR   M+I+M NVDDMKAFL++ D +K  YC+II Q+N
Subjt:  ASTRLVEVVRQLQRILELSRYDRVCSMQILMCNVDDMKAFLDILDELKLDYCTIIFQDN

KAA0060529.1 retrotransposon protein [Cucumis melo var. makuwa]1.7e-7995.73Show/hide
Query:  MRECAETFTDVGSNLPEGYEGFSADDGNDMEIPMMYSQGIDMLSDDIMGTRPDRSTEGRTGSSGSKRKQGGQAVETMEIIRNVMEHSNDRLKAIVEWSNV
        MR C ETFTDVGSN PEGYEGFSADDGNDMEIPMMYSQGIDMLSDDIMGTRPDRSTEGRTGSSGSKRKQGGQAVETMEIIRNVMEHSNDRLKAIVEW NV
Subjt:  MRECAETFTDVGSNLPEGYEGFSADDGNDMEIPMMYSQGIDMLSDDIMGTRPDRSTEGRTGSSGSKRKQGGQAVETMEIIRNVMEHSNDRLKAIVEWSNV

Query:  QRQDASTRLVEVVRQLQRILELSRYDRVCSMQILMCNVDDMKAFLDILDELKLDYCTIIFQDNA
        QRQDAS RLVEVVRQLQRI ELSRYDRV SMQILMCNVDDMKAFLDILDELKLDYCTIIFQDNA
Subjt:  QRQDASTRLVEVVRQLQRILELSRYDRVCSMQILMCNVDDMKAFLDILDELKLDYCTIIFQDNA

TYK11924.1 retrotransposon protein [Cucumis melo var. makuwa]3.5e-3761.81Show/hide
Query:  FTDVGSNLPEGYEGFSADDGNDMEIPMMYSQGIDMLSDDIMGTRPDRSTEGRTGSSGSKRKQGGQAVETMEIIRNVMEHSNDRLKAIVEWSNVQRQDAST
        F DVGSN+P GYEGF  D  NDMEIP MYS+G+DM +  I GTR   + E R G S SK+K+GGQ++ET+EIIRNVME++ND+LKAI EW NVQ QDAST
Subjt:  FTDVGSNLPEGYEGFSADDGNDMEIPMMYSQGIDMLSDDIMGTRPDRSTEGRTGSSGSKRKQGGQAVETMEIIRNVMEHSNDRLKAIVEWSNVQRQDAST

Query:  RLVEVVRQLQRILELSRYDRVCSMQILMCNVDDMKAFLDILDEL
           E VRQLQ ILELSR D+   + +LM NV+DMKA LD+ D++
Subjt:  RLVEVVRQLQRILELSRYDRVCSMQILMCNVDDMKAFLDILDEL

TrEMBL top hitse value%identityAlignment
A0A5A7TDD6 Retrotransposon protein1.0e-3453.16Show/hide
Query:  ETFTDVGSNLPEGYEGFSADDGNDMEIPMMYSQGIDMLSDDIMGTRPDRSTEGRTGSSGSKRKQGGQAVETMEIIRNVMEHSNDRLKAIVEWSNVQRQDA
        ++F DVGSN P GY+ F AD   DM+ P MY+QG++M SDD+MGTR     E R  SSGSKRK+ G + ++ +IIR ++E+ N++L  I EW  +QRQDA
Subjt:  ETFTDVGSNLPEGYEGFSADDGNDMEIPMMYSQGIDMLSDDIMGTRPDRSTEGRTGSSGSKRKQGGQAVETMEIIRNVMEHSNDRLKAIVEWSNVQRQDA

Query:  STRLVEVVRQLQRILELSRYDRVCSMQILMCNVDDMKAFLDILDELKLDYCTIIFQDN
        S    EVVRQL+ I EL+  DR   M+ILM NVDDMKAFLD+ + +K  YC+II Q+N
Subjt:  STRLVEVVRQLQRILELSRYDRVCSMQILMCNVDDMKAFLDILDELKLDYCTIIFQDN

A0A5A7TYQ6 Retrotransposon protein6.7e-3450.94Show/hide
Query:  AETFTDVGSNLPEGYEGFSADDGNDMEIPMMYSQGIDMLSDDIMGTRPDRSTEGRTGSSGSKRKQGGQAVETMEIIRNVMEHSNDRLKAIVEWSNVQRQD
        AE+F D+GSN P GY+ F+ADD +D +   MYS G++M  DD+M TR  R +E R  SSGSKRK+ G A ++ +I+R  ME+ N++L  I EW  +QRQD
Subjt:  AETFTDVGSNLPEGYEGFSADDGNDMEIPMMYSQGIDMLSDDIMGTRPDRSTEGRTGSSGSKRKQGGQAVETMEIIRNVMEHSNDRLKAIVEWSNVQRQD

Query:  ASTRLVEVVRQLQRILELSRYDRVCSMQILMCNVDDMKAFLDILDELKLDYCTIIFQDN
        A+    E+VRQL+ I EL+  DR   M+I+M NVDDMKAFL++ D +K  YC+II Q+N
Subjt:  ASTRLVEVVRQLQRILELSRYDRVCSMQILMCNVDDMKAFLDILDELKLDYCTIIFQDN

A0A5A7V469 Retrotransposon protein8.1e-8095.73Show/hide
Query:  MRECAETFTDVGSNLPEGYEGFSADDGNDMEIPMMYSQGIDMLSDDIMGTRPDRSTEGRTGSSGSKRKQGGQAVETMEIIRNVMEHSNDRLKAIVEWSNV
        MR C ETFTDVGSN PEGYEGFSADDGNDMEIPMMYSQGIDMLSDDIMGTRPDRSTEGRTGSSGSKRKQGGQAVETMEIIRNVMEHSNDRLKAIVEW NV
Subjt:  MRECAETFTDVGSNLPEGYEGFSADDGNDMEIPMMYSQGIDMLSDDIMGTRPDRSTEGRTGSSGSKRKQGGQAVETMEIIRNVMEHSNDRLKAIVEWSNV

Query:  QRQDASTRLVEVVRQLQRILELSRYDRVCSMQILMCNVDDMKAFLDILDELKLDYCTIIFQDNA
        QRQDAS RLVEVVRQLQRI ELSRYDRV SMQILMCNVDDMKAFLDILDELKLDYCTIIFQDNA
Subjt:  QRQDASTRLVEVVRQLQRILELSRYDRVCSMQILMCNVDDMKAFLDILDELKLDYCTIIFQDNA

A0A5D3CL79 Retrotransposon protein1.7e-3761.81Show/hide
Query:  FTDVGSNLPEGYEGFSADDGNDMEIPMMYSQGIDMLSDDIMGTRPDRSTEGRTGSSGSKRKQGGQAVETMEIIRNVMEHSNDRLKAIVEWSNVQRQDAST
        F DVGSN+P GYEGF  D  NDMEIP MYS+G+DM +  I GTR   + E R G S SK+K+GGQ++ET+EIIRNVME++ND+LKAI EW NVQ QDAST
Subjt:  FTDVGSNLPEGYEGFSADDGNDMEIPMMYSQGIDMLSDDIMGTRPDRSTEGRTGSSGSKRKQGGQAVETMEIIRNVMEHSNDRLKAIVEWSNVQRQDAST

Query:  RLVEVVRQLQRILELSRYDRVCSMQILMCNVDDMKAFLDILDEL
           E VRQLQ ILELSR D+   + +LM NV+DMKA LD+ D++
Subjt:  RLVEVVRQLQRILELSRYDRVCSMQILMCNVDDMKAFLDILDEL

A0A5D3E474 Retrotransposon protein2.6e-3350.94Show/hide
Query:  AETFTDVGSNLPEGYEGFSADDGNDMEIPMMYSQGIDMLSDDIMGTRPDRSTEGRTGSSGSKRKQGGQAVETMEIIRNVMEHSNDRLKAIVEWSNVQRQD
        AE F D+GSN P GY+ F AD   D   P MYS G++M  DD+M TR  R +E R  SSGSKRK+ G A ++ +I+R  +E+ N++L  I EW  +QRQD
Subjt:  AETFTDVGSNLPEGYEGFSADDGNDMEIPMMYSQGIDMLSDDIMGTRPDRSTEGRTGSSGSKRKQGGQAVETMEIIRNVMEHSNDRLKAIVEWSNVQRQD

Query:  ASTRLVEVVRQLQRILELSRYDRVCSMQILMCNVDDMKAFLDILDELKLDYCTIIFQDN
        AS    E+VRQL+ I +L+  DR   M ILM NVDDMKAFL++ D +K  YC+II Q+N
Subjt:  ASTRLVEVVRQLQRILELSRYDRVCSMQILMCNVDDMKAFLDILDELKLDYCTIIFQDN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAGAGTGCGCAGAGACATTCACCGATGTGGGGTCGAATTTGCCTGAAGGGTACGAGGGATTTTCTGCTGACGATGGAAACGATATGGAGATCCCTATGATG
TATAGTCAAGGAATAGACATGTTGTCTGATGACATCATGGGCACACGACCCGATCGCTCAACTGAGGGTAGGACTGGTTCAAGCGGGTCGAAGAGGAAGCAGGGA
GGTCAGGCGGTAGAAACTATGGAAATCATTCGCAATGTAATGGAACATTCAAATGACCGATTGAAGGCCATTGTAGAATGGTCGAATGTACAACGCCAAGATGCA
AGCACAAGACTTGTGGAAGTCGTTAGACAGTTGCAGAGAATACTTGAACTAAGTAGATATGACAGGGTTTGCAGTATGCAGATACTTATGTGCAATGTGGACGAC
ATGAAAGCATTCTTGGACATACTCGATGAGCTTAAATTGGACTATTGCACAATCATTTTTCAAGATAACGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGAGAGTGCGCAGAGACATTCACCGATGTGGGGTCGAATTTGCCTGAAGGGTACGAGGGATTTTCTGCTGACGATGGAAACGATATGGAGATCCCTATGATG
TATAGTCAAGGAATAGACATGTTGTCTGATGACATCATGGGCACACGACCCGATCGCTCAACTGAGGGTAGGACTGGTTCAAGCGGGTCGAAGAGGAAGCAGGGA
GGTCAGGCGGTAGAAACTATGGAAATCATTCGCAATGTAATGGAACATTCAAATGACCGATTGAAGGCCATTGTAGAATGGTCGAATGTACAACGCCAAGATGCA
AGCACAAGACTTGTGGAAGTCGTTAGACAGTTGCAGAGAATACTTGAACTAAGTAGATATGACAGGGTTTGCAGTATGCAGATACTTATGTGCAATGTGGACGAC
ATGAAAGCATTCTTGGACATACTCGATGAGCTTAAATTGGACTATTGCACAATCATTTTTCAAGATAACGCTTAA
Protein sequenceShow/hide protein sequence
MRECAETFTDVGSNLPEGYEGFSADDGNDMEIPMMYSQGIDMLSDDIMGTRPDRSTEGRTGSSGSKRKQGGQAVETMEIIRNVMEHSNDRLKAIVEWSNVQRQDA
STRLVEVVRQLQRILELSRYDRVCSMQILMCNVDDMKAFLDILDELKLDYCTIIFQDNA