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MELO3C017777 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C017777
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionPentatricopeptide repeat-containing protein
Genome locationchr07:24679188..24681686
RNA-Seq ExpressionMELO3C017777
SyntenyMELO3C017777
Gene Ontology termsGO:0000373 - Group II intron splicing (biological process)
GO:0009658 - chloroplast organization (biological process)
GO:0003723 - RNA binding (molecular function)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily
IPR044190 - Protein THYLAKOID ASSEMBLY 8-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044536.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]7.5e-6799.22Show/hide
Query:  MQNEEWYEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAADTYRLMIASGCTPDKLTFKILIKNLEKFKEEFAI
        MQNEEWYEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAADTYRLMIASGCTPDKLTFKILIKNLEKFKEEFAI
Subjt:  MQNEEWYEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAADTYRLMIASGCTPDKLTFKILIKNLEKFKEEFAI

Query:  VVKKDCYEYLDNPQKFFNDEGQKLTTKG
        VVKKDC+EYLDNPQKFFNDEGQKLTTKG
Subjt:  VVKKDCYEYLDNPQKFFNDEGQKLTTKG

KGN53003.1 hypothetical protein Csa_015115 [Cucumis sativus]2.5e-6292.91Show/hide
Query:  MQNEEWYEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAADTYRLMIASGCTPDKLTFKILIKNLEKFKEEFAI
        MQNEEW+EPDLRLYHGMIM+MGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERA +TYRLMIASGCTPD+LTFKILIKNLEKF+EEFA+
Subjt:  MQNEEWYEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAADTYRLMIASGCTPDKLTFKILIKNLEKFKEEFAI

Query:  VVKKDCYEYLDNPQKFFNDEGQKLTTK
        VVKKDC EYLDNPQKFFND GQKLTTK
Subjt:  VVKKDCYEYLDNPQKFFNDEGQKLTTK

XP_004152311.2 pentatricopeptide repeat-containing protein At1g62350 [Cucumis sativus]2.5e-6292.91Show/hide
Query:  MQNEEWYEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAADTYRLMIASGCTPDKLTFKILIKNLEKFKEEFAI
        MQNEEW+EPDLRLYHGMIM+MGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERA +TYRLMIASGCTPD+LTFKILIKNLEKF+EEFA+
Subjt:  MQNEEWYEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAADTYRLMIASGCTPDKLTFKILIKNLEKFKEEFAI

Query:  VVKKDCYEYLDNPQKFFNDEGQKLTTK
        VVKKDC EYLDNPQKFFND GQKLTTK
Subjt:  VVKKDCYEYLDNPQKFFNDEGQKLTTK

XP_008454079.1 PREDICTED: pentatricopeptide repeat-containing protein At1g62350-like [Cucumis melo]2.0e-67100Show/hide
Query:  MQNEEWYEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAADTYRLMIASGCTPDKLTFKILIKNLEKFKEEFAI
        MQNEEWYEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAADTYRLMIASGCTPDKLTFKILIKNLEKFKEEFAI
Subjt:  MQNEEWYEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAADTYRLMIASGCTPDKLTFKILIKNLEKFKEEFAI

Query:  VVKKDCYEYLDNPQKFFNDEGQKLTTKG
        VVKKDCYEYLDNPQKFFNDEGQKLTTKG
Subjt:  VVKKDCYEYLDNPQKFFNDEGQKLTTKG

XP_038878176.1 pentatricopeptide repeat-containing protein At1g62350-like [Benincasa hispida]1.9e-5482.03Show/hide
Query:  MQNEEWYEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAADTYRLMIASGCTPDKLTFKILIKNLEKFKEEFAI
        +QNEEWYEPDLRLYHGMI+M GKNKMIEMAEE+FHKL+KDGLEPD RAFNEMMGAYLQVDM+ERA +TY LM ASGCTPDKLTFKILIKNLEKF+EEFA 
Subjt:  MQNEEWYEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAADTYRLMIASGCTPDKLTFKILIKNLEKFKEEFAI

Query:  VVKKDCYEYLDNPQKFFNDEGQKLTTKG
        VVKK+C  YLD+P+KF ND  QK T KG
Subjt:  VVKKDCYEYLDNPQKFFNDEGQKLTTKG

TrEMBL top hitse value%identityAlignment
A0A0A0KU23 Uncharacterized protein1.2e-6292.91Show/hide
Query:  MQNEEWYEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAADTYRLMIASGCTPDKLTFKILIKNLEKFKEEFAI
        MQNEEW+EPDLRLYHGMIM+MGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERA +TYRLMIASGCTPD+LTFKILIKNLEKF+EEFA+
Subjt:  MQNEEWYEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAADTYRLMIASGCTPDKLTFKILIKNLEKFKEEFAI

Query:  VVKKDCYEYLDNPQKFFNDEGQKLTTK
        VVKKDC EYLDNPQKFFND GQKLTTK
Subjt:  VVKKDCYEYLDNPQKFFNDEGQKLTTK

A0A1S3BX97 pentatricopeptide repeat-containing protein At1g62350-like9.5e-68100Show/hide
Query:  MQNEEWYEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAADTYRLMIASGCTPDKLTFKILIKNLEKFKEEFAI
        MQNEEWYEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAADTYRLMIASGCTPDKLTFKILIKNLEKFKEEFAI
Subjt:  MQNEEWYEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAADTYRLMIASGCTPDKLTFKILIKNLEKFKEEFAI

Query:  VVKKDCYEYLDNPQKFFNDEGQKLTTKG
        VVKKDCYEYLDNPQKFFNDEGQKLTTKG
Subjt:  VVKKDCYEYLDNPQKFFNDEGQKLTTKG

A0A5A7TQZ8 Pentatricopeptide repeat-containing protein3.6e-6799.22Show/hide
Query:  MQNEEWYEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAADTYRLMIASGCTPDKLTFKILIKNLEKFKEEFAI
        MQNEEWYEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAADTYRLMIASGCTPDKLTFKILIKNLEKFKEEFAI
Subjt:  MQNEEWYEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAADTYRLMIASGCTPDKLTFKILIKNLEKFKEEFAI

Query:  VVKKDCYEYLDNPQKFFNDEGQKLTTKG
        VVKKDC+EYLDNPQKFFNDEGQKLTTKG
Subjt:  VVKKDCYEYLDNPQKFFNDEGQKLTTKG

A0A5D3CZ95 Pentatricopeptide repeat-containing protein9.5e-68100Show/hide
Query:  MQNEEWYEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAADTYRLMIASGCTPDKLTFKILIKNLEKFKEEFAI
        MQNEEWYEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAADTYRLMIASGCTPDKLTFKILIKNLEKFKEEFAI
Subjt:  MQNEEWYEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAADTYRLMIASGCTPDKLTFKILIKNLEKFKEEFAI

Query:  VVKKDCYEYLDNPQKFFNDEGQKLTTKG
        VVKKDCYEYLDNPQKFFNDEGQKLTTKG
Subjt:  VVKKDCYEYLDNPQKFFNDEGQKLTTKG

A0A6J1IY98 pentatricopeptide repeat-containing protein At1g62350-like6.2e-5179.84Show/hide
Query:  MQNEEWYEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAADTYRLMIASGCTPDKLTFKILIKNLEKFKEEFAI
        M+NEEWYEPDL LYH MI MMGKNKMIEMAEEVFH  ++DGLEPDTRAFNEMMGAYLQVDM+ERA +TY LM ASGCTPDKLTFKILIKNLE+F+EEFA 
Subjt:  MQNEEWYEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAADTYRLMIASGCTPDKLTFKILIKNLEKFKEEFAI

Query:  VVKKDCYEYLDNPQKFFNDEGQKL
        VVKK+C E+LD+P+KF  D  QKL
Subjt:  VVKKDCYEYLDNPQKFFNDEGQKL

SwissProt top hitse value%identityAlignment
A0A1D6IEG9 Pentatricopeptide repeat-containing protein CRP1, chloroplastic3.1e-0733.73Show/hide
Query:  PDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAADTYRLMIASGCTPDKLTFKILIKNL
        PD   Y+ MI   GK   +  A + F+K+R++G+EPD   +N ++ A+ +    +RAA+ +  M  S C P   T+ I+I  L
Subjt:  PDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAADTYRLMIASGCTPDKLTFKILIKNL

O82178 Pentatricopeptide repeat-containing protein At2g351309.6e-0932.1Show/hide
Query:  EPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAADTYRLMIASGCTPDKLTFKILI
        +P++  Y  ++    +  + E AEE+F +L++DGLEPD   +N +M +Y +      AA+ + LM   GC PD+ ++ I++
Subjt:  EPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAADTYRLMIASGCTPDKLTFKILI

Q1PFH7 Pentatricopeptide repeat-containing protein At1g623501.8e-0728.57Show/hide
Query:  MQNEEWYEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAADTYRLMIASGCTPDKLTFKILIKNL-------EK
        ++ E WY PD+  Y  M+MM+ +NK ++  ++V+  L+K+ +  D   F +++  +L  ++   A   Y  M  S   P  L F++++K L       EK
Subjt:  MQNEEWYEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAADTYRLMIASGCTPDKLTFKILIKNL-------EK

Query:  FKEEF
         K++F
Subjt:  FKEEF

Q9STF9 Protein THYLAKOID ASSEMBLY 8-like, chloroplastic1.8e-1028.8Show/hide
Query:  MQNEEWYEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAADTYRLMIASGCTPDKLTFKILIKNL-------EK
        +Q +EWY+PD+ +Y  +I+ + K+K ++ A  ++ K++K+ L PD++ + E++  +L+      A + Y  M+ S   P++L F++L+K L        K
Subjt:  MQNEEWYEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAADTYRLMIASGCTPDKLTFKILIKNL-------EK

Query:  FKEEF-AIVVKKDCYEYLDNPQKFF
         K++F  +  +K  Y   D P++ F
Subjt:  FKEEF-AIVVKKDCYEYLDNPQKFF

Q9ZU27 Pentatricopeptide repeat-containing protein At1g51965, mitochondrial8.2e-0830.23Show/hide
Query:  EPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAADTYRLMIASGCTPDKLTFKILIKNLEK
        +PD+  Y+ +I  +GKN  ++ A   F ++++ GL PD   ++ +M  + + + +E A   +  M+  GC P+ +T+ IL+  LEK
Subjt:  EPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAADTYRLMIASGCTPDKLTFKILIKNLEK

Arabidopsis top hitse value%identityAlignment
AT1G51965.1 ABA Overly-Sensitive 55.8e-0930.23Show/hide
Query:  EPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAADTYRLMIASGCTPDKLTFKILIKNLEK
        +PD+  Y+ +I  +GKN  ++ A   F ++++ GL PD   ++ +M  + + + +E A   +  M+  GC P+ +T+ IL+  LEK
Subjt:  EPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAADTYRLMIASGCTPDKLTFKILIKNLEK

AT1G62350.1 Pentatricopeptide repeat (PPR) superfamily protein1.3e-0828.57Show/hide
Query:  MQNEEWYEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAADTYRLMIASGCTPDKLTFKILIKNL-------EK
        ++ E WY PD+  Y  M+MM+ +NK ++  ++V+  L+K+ +  D   F +++  +L  ++   A   Y  M  S   P  L F++++K L       EK
Subjt:  MQNEEWYEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAADTYRLMIASGCTPDKLTFKILIKNL-------EK

Query:  FKEEF
         K++F
Subjt:  FKEEF

AT2G35130.1 Tetratricopeptide repeat (TPR)-like superfamily protein6.8e-1032.1Show/hide
Query:  EPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAADTYRLMIASGCTPDKLTFKILI
        +P++  Y  ++    +  + E AEE+F +L++DGLEPD   +N +M +Y +      AA+ + LM   GC PD+ ++ I++
Subjt:  EPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAADTYRLMIASGCTPDKLTFKILI

AT2G35130.2 Tetratricopeptide repeat (TPR)-like superfamily protein6.8e-1032.1Show/hide
Query:  EPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAADTYRLMIASGCTPDKLTFKILI
        +P++  Y  ++    +  + E AEE+F +L++DGLEPD   +N +M +Y +      AA+ + LM   GC PD+ ++ I++
Subjt:  EPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAADTYRLMIASGCTPDKLTFKILI

AT3G46870.1 Pentatricopeptide repeat (PPR) superfamily protein1.2e-1128.8Show/hide
Query:  MQNEEWYEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAADTYRLMIASGCTPDKLTFKILIKNL-------EK
        +Q +EWY+PD+ +Y  +I+ + K+K ++ A  ++ K++K+ L PD++ + E++  +L+      A + Y  M+ S   P++L F++L+K L        K
Subjt:  MQNEEWYEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAADTYRLMIASGCTPDKLTFKILIKNL-------EK

Query:  FKEEF-AIVVKKDCYEYLDNPQKFF
         K++F  +  +K  Y   D P++ F
Subjt:  FKEEF-AIVVKKDCYEYLDNPQKFF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAAATGAAGAATGGTACGAGCCAGATTTAAGGTTATACCATGGAATGATTATGATGATGGGAAAGAACAAAATGATTGAAATGGCTGAAGAGGTCTTTCATAAGTT
AAGAAAGGATGGGTTAGAACCAGACACAAGAGCTTTCAATGAAATGATGGGAGCATATCTGCAAGTGGACATGATCGAAAGAGCGGCTGATACATACAGATTGATGATAG
CTTCAGGTTGTACTCCAGATAAACTGACTTTCAAGATCTTGATAAAGAATCTTGAGAAATTTAAGGAAGAATTTGCTATAGTGGTGAAGAAAGACTGTTATGAGTACTTG
GATAATCCTCAGAAGTTTTTCAACGACGAAGGGCAGAAACTGACGACGAAAGGTTGA
mRNA sequenceShow/hide mRNA sequence
ATTTGTGAAAAAGTGGAGCGGATCATCGATTGCTAAAAGAGTCATCCGTACACAAGTCTCTTCAAGTGATAAACCAAAGTGAACCAAAATAGAAACGGTCTCACGTTACT
ATCCCGATAAGCTGAGATATATCGAAGTGGCAACGCCGAGCGCGTACACTGCAACCACAGCTCCAACCACATCCTTTCCAGACCGAGTCACGGCGCCGATTCCGGCGATT
CCGGCAATTCCCATCGGAACTCGAACCATCACTTTCTTTCCCACGTTCTTCACCACAGCCTCTGCGAATAGTTCAATCGCCCAACGCTGAAACCGGATCAGTCCTAGTGT
TTCGCCTTCACAATCCGAGTCATCGCGATTGACGGCTCGTAGTGCTGAGTCCACTTGGAGACGAGTCGGGGGAGAGGGAAGCCAGTTGGTGATTAGTGGATGCGGCTGGA
CGACGGTGAGGAGGTGGTGAAGGTGGTCGGCGGCGGTGCAGAGTTGATAGGGGAAAACGCCGTTGTATGCGTGCTGTGTTAGGGCAAGGCAGTGGGAGAAGGTTGAATTG
CAGGCTGAGTCAAATTCGGGCGAGTTGGTAAGTGAGTTTCTGACTCGTTTTGAAGCTGATAGTCCCATTATCTTTCTTCCTCGCCTCCCTCTCGCTCTCTCTCTCTCCTT
CCCTCAACCAATTCTGGTCTTTAAGGACACTGGAATAAATATCTGAAGACAAAAGCCTTTTATATTAAGTGTAGTTTTCACATAGATTAGCAAAATATCTTTAAACCTCA
AAATTTTCCAATAAGCTTCTAAAAAATTTTAAGAATACCCATACGGTTAGATTTCTGCTACATTCCATCTTCATTGAACTGACTTTCTCGCAAAAGGGCGGTTGGAGATG
AAATCTACTCTAATGGGTCGTCTTCAACTCCATTTTCCTGAATTGGGTCTTCGCCAAAACCTCACAAACCGAAGCCTCCATTGTTGTACGGCAGCTCCACCTCCAAATAT
CATTTGTGGCCTCAGAAAGGGTTTGAAGAAGCCCTTAGGGAGGTCAAGGGTGCCCTCCAATGAGGCAATTCAAGCAGTTCAATCTCTCAAGCTTGCTAAATGTACCTCCA
AAATGGAAGACGTTATCAATACCAAGCTCAGCAGATTGCTTAAAGCAGACTTGTTTGATGCTCTGACTGAATTACAGAGGCAAAATGAATTGGAATTATCGCTTCAGGCT
TTAGGTCTTTAAATTTATGCAAAATGAAGAATGGTACGAGCCAGATTTAAGGTTATACCATGGAATGATTATGATGATGGGAAAGAACAAAATGATTGAAATGGCTGAAG
AGGTCTTTCATAAGTTAAGAAAGGATGGGTTAGAACCAGACACAAGAGCTTTCAATGAAATGATGGGAGCATATCTGCAAGTGGACATGATCGAAAGAGCGGCTGATACA
TACAGATTGATGATAGCTTCAGGTTGTACTCCAGATAAACTGACTTTCAAGATCTTGATAAAGAATCTTGAGAAATTTAAGGAAGAATTTGCTATAGTGGTGAAGAAAGA
CTGTTATGAGTACTTGGATAATCCTCAGAAGTTTTTCAACGACGAAGGGCAGAAACTGACGACGAAAGGTTGAATTCTTTAAACATGCAGTTGGGTTACTTCTGGGATTG
TATTTGATTTTTTATCTGATCAATGTCTTTGGGATTCTCATAATCCTTGAATACTTTGTAACAGCTAGTAATGAATGAAGGTAAACTCTAGACTATTAACTATGATGCGA
GTGGCTGAGTTTTCGGTGAGCTCTTTTTTGCCATGGAACTTAATTGTTACCGAATGTCAATACTTGGATGAAAATTTTCATTGTTACA
Protein sequenceShow/hide protein sequence
MQNEEWYEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAADTYRLMIASGCTPDKLTFKILIKNLEKFKEEFAIVVKKDCYEYL
DNPQKFFNDEGQKLTTKG