; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MELO3C017900 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C017900
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionTATA-binding protein-associated factor 2N-like
Genome locationchr07:25585426..25586622
RNA-Seq ExpressionMELO3C017900
SyntenyMELO3C017900
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR001876 - Zinc finger, RanBP2-type
IPR036443 - Zinc finger, RanBP2-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN52873.1 hypothetical protein Csa_014917 [Cucumis sativus]6.1e-8197.26Show/hide
Query:  MSRPGDWNCRSCQHLNFQRRDMCQRCGEPKSGGGVGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF
        MSRPGDWNCRSCQHLNFQRRDMCQRCGEPKSGGG+GRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPR SPRGISPF
Subjt:  MSRPGDWNCRSCQHLNFQRRDMCQRCGEPKSGGGVGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF

Query:  AFASPARAAASAWKSGDWICARSGCNEHNFASRMECFRCSAPRDSY
        AF SPAR AASAWKSGDWICARSGCNEHNFASRMECFRCSAPRDSY
Subjt:  AFASPARAAASAWKSGDWICARSGCNEHNFASRMECFRCSAPRDSY

XP_008454250.1 PREDICTED: uncharacterized RNA-binding protein C17H9.04c-like [Cucumis melo]3.8e-83100Show/hide
Query:  MSRPGDWNCRSCQHLNFQRRDMCQRCGEPKSGGGVGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF
        MSRPGDWNCRSCQHLNFQRRDMCQRCGEPKSGGGVGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF
Subjt:  MSRPGDWNCRSCQHLNFQRRDMCQRCGEPKSGGGVGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF

Query:  AFASPARAAASAWKSGDWICARSGCNEHNFASRMECFRCSAPRDSY
        AFASPARAAASAWKSGDWICARSGCNEHNFASRMECFRCSAPRDSY
Subjt:  AFASPARAAASAWKSGDWICARSGCNEHNFASRMECFRCSAPRDSY

XP_022955940.1 uncharacterized RNA-binding protein C17H9.04c-like [Cucurbita moschata]1.7e-7589.04Show/hide
Query:  MSRPGDWNCRSCQHLNFQRRDMCQRCGEPKSGGGVGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF
        M+RPGDWNC SC HLNFQRRD+CQRCG+PK+GGG  R GSGFG+GGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFD+PRP+PRGISPF
Subjt:  MSRPGDWNCRSCQHLNFQRRDMCQRCGEPKSGGGVGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF

Query:  AFASPARAAASAWKSGDWICARSGCNEHNFASRMECFRCSAPRDSY
        AFA+PAR+ ASAWKSGDWICARSGCNEHNFASRMECFRC+APRDSY
Subjt:  AFASPARAAASAWKSGDWICARSGCNEHNFASRMECFRCSAPRDSY

XP_022979604.1 ranBP2-type zinc finger protein At1g67325-like [Cucurbita maxima]1.2e-7387.67Show/hide
Query:  MSRPGDWNCRSCQHLNFQRRDMCQRCGEPKSGGGVGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF
        M+RPGDWNC SC HLNFQRRD+CQRCG+PK+GGG GR GSGFG+GGSDVRPGDWYCS+GNCGAHNFASRSSCFKCGAFKDDMSAFDFD+PRP+PRGISPF
Subjt:  MSRPGDWNCRSCQHLNFQRRDMCQRCGEPKSGGGVGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF

Query:  AFASPARAAASAWKSGDWICARSGCNEHNFASRMECFRCSAPRDSY
         F +PAR+ ASAWKSGDWICARSGCNEHNFASRMECFRC+APRDSY
Subjt:  AFASPARAAASAWKSGDWICARSGCNEHNFASRMECFRCSAPRDSY

XP_038892097.1 zinc finger Ran-binding domain-containing protein 2-like [Benincasa hispida]5.5e-8297.95Show/hide
Query:  MSRPGDWNCRSCQHLNFQRRDMCQRCGEPKSGGGVGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF
        MSRPGDWNCRSCQHLNFQRRDMCQRCG+PKSGGGVGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISP+
Subjt:  MSRPGDWNCRSCQHLNFQRRDMCQRCGEPKSGGGVGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF

Query:  AFASPARAAASAWKSGDWICARSGCNEHNFASRMECFRCSAPRDSY
        AFASPAR AASAWKSGDWICARSGCNEHNFASRMECFRCSAPRDSY
Subjt:  AFASPARAAASAWKSGDWICARSGCNEHNFASRMECFRCSAPRDSY

TrEMBL top hitse value%identityAlignment
A0A0A0KTI0 Uncharacterized protein2.9e-8197.26Show/hide
Query:  MSRPGDWNCRSCQHLNFQRRDMCQRCGEPKSGGGVGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF
        MSRPGDWNCRSCQHLNFQRRDMCQRCGEPKSGGG+GRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPR SPRGISPF
Subjt:  MSRPGDWNCRSCQHLNFQRRDMCQRCGEPKSGGGVGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF

Query:  AFASPARAAASAWKSGDWICARSGCNEHNFASRMECFRCSAPRDSY
        AF SPAR AASAWKSGDWICARSGCNEHNFASRMECFRCSAPRDSY
Subjt:  AFASPARAAASAWKSGDWICARSGCNEHNFASRMECFRCSAPRDSY

A0A1S3BZE4 uncharacterized RNA-binding protein C17H9.04c-like1.8e-83100Show/hide
Query:  MSRPGDWNCRSCQHLNFQRRDMCQRCGEPKSGGGVGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF
        MSRPGDWNCRSCQHLNFQRRDMCQRCGEPKSGGGVGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF
Subjt:  MSRPGDWNCRSCQHLNFQRRDMCQRCGEPKSGGGVGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF

Query:  AFASPARAAASAWKSGDWICARSGCNEHNFASRMECFRCSAPRDSY
        AFASPARAAASAWKSGDWICARSGCNEHNFASRMECFRCSAPRDSY
Subjt:  AFASPARAAASAWKSGDWICARSGCNEHNFASRMECFRCSAPRDSY

A0A6J1GA82 periodic tryptophan protein 2 isoform X23.0e-7081.71Show/hide
Query:  MSRPGDWNCRSCQHLNFQRRDMCQRCGEPKSGG----------GVGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSA----FD
        MSRPGDWNCRSCQHLNFQRRDMCQRCG+PKSGG          G GRGGSGFGYGGSDVRPGDWYCS+GNCGAHNFASRSSCFKCGAFKDDMSA    FD
Subjt:  MSRPGDWNCRSCQHLNFQRRDMCQRCGEPKSGG----------GVGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSA----FD

Query:  FDIPRPSPRGISPFAFASPARAA----ASAWKSGDWICARSGCNEHNFASRMECFRCSAPRDSY
        FD+PR   RG+SPF FA+PA AA    ASAWKSGDWICARSGCNEHNFASRMECFRCSAP+DSY
Subjt:  FDIPRPSPRGISPFAFASPARAA----ASAWKSGDWICARSGCNEHNFASRMECFRCSAPRDSY

A0A6J1GWG9 uncharacterized RNA-binding protein C17H9.04c-like8.3e-7689.04Show/hide
Query:  MSRPGDWNCRSCQHLNFQRRDMCQRCGEPKSGGGVGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF
        M+RPGDWNC SC HLNFQRRD+CQRCG+PK+GGG  R GSGFG+GGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFD+PRP+PRGISPF
Subjt:  MSRPGDWNCRSCQHLNFQRRDMCQRCGEPKSGGGVGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF

Query:  AFASPARAAASAWKSGDWICARSGCNEHNFASRMECFRCSAPRDSY
        AFA+PAR+ ASAWKSGDWICARSGCNEHNFASRMECFRC+APRDSY
Subjt:  AFASPARAAASAWKSGDWICARSGCNEHNFASRMECFRCSAPRDSY

A0A6J1IX27 ranBP2-type zinc finger protein At1g67325-like5.9e-7487.67Show/hide
Query:  MSRPGDWNCRSCQHLNFQRRDMCQRCGEPKSGGGVGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF
        M+RPGDWNC SC HLNFQRRD+CQRCG+PK+GGG GR GSGFG+GGSDVRPGDWYCS+GNCGAHNFASRSSCFKCGAFKDDMSAFDFD+PRP+PRGISPF
Subjt:  MSRPGDWNCRSCQHLNFQRRDMCQRCGEPKSGGGVGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF

Query:  AFASPARAAASAWKSGDWICARSGCNEHNFASRMECFRCSAPRDSY
         F +PAR+ ASAWKSGDWICARSGCNEHNFASRMECFRC+APRDSY
Subjt:  AFASPARAAASAWKSGDWICARSGCNEHNFASRMECFRCSAPRDSY

SwissProt top hitse value%identityAlignment
O13801 Uncharacterized RNA-binding protein C17H9.04c5.5e-0829.45Show/hide
Query:  RPGDWNCRSCQHLNFQRRDMCQRCGEP-----KSGGGVGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGI
        RPGDWNC  C   NFQRR  C RC  P      +  G       F YG           S GN  +H  A+    +       + +    D+   +    
Subjt:  RPGDWNCRSCQHLNFQRRDMCQRCGEP-----KSGGGVGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGI

Query:  SPFAFASPARAAASAWKSGDWICARSGCNEHNFASRMECFRCSAPR
             +S +      +++GDW C   GC  HNFA  + C RC A R
Subjt:  SPFAFASPARAAASAWKSGDWICARSGCNEHNFASRMECFRCSAPR

P32770 Asparagine-rich protein8.1e-0466.67Show/hide
Query:  RPGDWNCRSCQHLNFQRRDMCQRCGEP
        RPGDWNC SC   NFQRR  C RC  P
Subjt:  RPGDWNCRSCQHLNFQRRDMCQRCGEP

Q27294 RNA-binding protein cabeza3.7e-0445.59Show/hide
Query:  RPGDWNCRSCQHLNFQRRDMCQRCGEPK-----SGGGVGRGGSGFGYGGSDVRPGDWYCSVGNCGAHN
        R GDW C SC + NF  R+ C RC  PK     S GG G GG G G GG     G+   S G  G HN
Subjt:  RPGDWNCRSCQHLNFQRRDMCQRCGEPK-----SGGGVGRGGSGFGYGGSDVRPGDWYCSVGNCGAHN

Arabidopsis top hitse value%identityAlignment
AT1G70650.1 Ran BP2/NZF zinc finger-like superfamily protein5.8e-0530.14Show/hide
Query:  RPGDWNCRSCQHLNFQRRDMCQRCGEPKSGGGVGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKC
        + GDW C++C  LNF +   C RC +  +                 + PG+W C   +C   NF   S C KC
Subjt:  RPGDWNCRSCQHLNFQRRDMCQRCGEPKSGGGVGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKC

AT2G17975.1 zinc finger (Ran-binding) family protein5.2e-0627.46Show/hide
Query:  RPGDWNCRSCQHLNFQRRDMCQRCGEPKSGGGVGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPFAF
        R GDW CR C   N+  R  C++C E      +     G     S+    +W     N G  +  ++S+ +            ++ +P P  +  S  A 
Subjt:  RPGDWNCRSCQHLNFQRRDMCQRCGEPKSGGGVGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPFAF

Query:  ASPARAAASAWKSGDWICARSGCNEHNFASRMECFRCSAPRD
                  W+ GDW+C  + C  HN+ASR EC RC   RD
Subjt:  ASPARAAASAWKSGDWICARSGCNEHNFASRMECFRCSAPRD

AT2G26695.1 Ran BP2/NZF zinc finger-like superfamily protein1.6e-3144.29Show/hide
Query:  GDWNCRSCQHLNFQRRDMCQRCGEPKSGGGVGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPFAFAS
        GDW C +CQH NF++R+ CQ+CG PK G   G   S + Y  ++V  GDWYC   NCG+HN+ASR+SC++CG  K + +   +        G    A+ +
Subjt:  GDWNCRSCQHLNFQRRDMCQRCGEPKSGGGVGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPFAFAS

Query:  PARAAASAWKSGDWICARSGCNEHNFASRMECFRCSAPRD
           A    WK+GDW+C R GC  HN+ASR ECF+C   RD
Subjt:  PARAAASAWKSGDWICARSGCNEHNFASRMECFRCSAPRD

AT3G15680.1 Ran BP2/NZF zinc finger-like superfamily protein3.1e-5161.68Show/hide
Query:  MSRPGDWNCRSCQHLNFQRRDMCQRCGEPKSG-GGV---------GRGGSGFGY-GGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSA-----
        MSRPGDWNCRSC HLNFQRRD CQRCG+ +SG GGV         GR  S FG+  GSDVRPGDWYC+VGNCG HNFASRS+CFKCG FKD+  A     
Subjt:  MSRPGDWNCRSCQHLNFQRRDMCQRCGEPKSG-GGV---------GRGGSGFGY-GGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSA-----

Query:  -------FDFDIPRPSPRGISPFAFASPARAAASAWKSGDWICARSGCNEHNFASRMECFRCSAPRD
               FD DI R             P     S+WKSGDWIC R GCNEHNFASRMECFRC+APRD
Subjt:  -------FDFDIPRPSPRGISPFAFASPARAAASAWKSGDWICARSGCNEHNFASRMECFRCSAPRD

AT5G25490.1 Ran BP2/NZF zinc finger-like superfamily protein8.8e-4657.67Show/hide
Query:  MSRPGDWNCRSCQHLNFQRRDMCQRCGEPKSGG-----GVGRGG----SGFGYG-GSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFD----
        M+RPGDWNCR C HLNFQRRD CQRC EP+ GG       G GG    S FG+  G DVRPGDWYC++G+CG HNFA+RSSCFKCGA KD+ S       
Subjt:  MSRPGDWNCRSCQHLNFQRRDMCQRCGEPKSGG-----GVGRGG----SGFGYG-GSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFD----

Query:  ---FDIPRPSPRGISPFAFASPARAAA--SAWKSGDWICARSGCNEHNFASRMECFRCSAPRD
            D+     RG+  F  +S        S WKSGDWIC RSGCNEHNFASR ECFRC+AP++
Subjt:  ---FDIPRPSPRGISPFAFASPARAAA--SAWKSGDWICARSGCNEHNFASRMECFRCSAPRD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTAGACCGGGAGACTGGAACTGTAGGTCATGCCAGCATTTGAACTTCCAGAGGAGGGACATGTGCCAGCGGTGCGGCGAACCGAAGAGCGGCGGCGGTGTC
GGAAGAGGTGGGTCTGGTTTCGGGTACGGAGGATCGGATGTGAGGCCCGGAGACTGGTACTGCAGCGTGGGAAATTGTGGAGCTCACAATTTTGCAAGCCGATCA
AGCTGCTTCAAATGTGGGGCTTTCAAAGACGACATGTCGGCCTTCGACTTCGATATTCCTCGTCCTAGTCCTAGAGGGATTTCCCCATTTGCTTTTGCCAGCCCC
GCTCGTGCTGCTGCCTCCGCTTGGAAGTCCGGTGACTGGATTTGTGCAAGGTCGGGTTGCAATGAACATAACTTTGCAAGCAGGATGGAGTGCTTTAGATGCAGT
GCTCCGAGAGACTCCTACTAA
mRNA sequenceShow/hide mRNA sequence
TATTTTTTTTTTACATTTGTTAACTTTGTTAATACAATTTGTAGAGAGAATTAAAGAGAAGATGAGTAGACCGGGAGACTGGAACTGTAGGTCATGCCAGCATTT
GAACTTCCAGAGGAGGGACATGTGCCAGCGGTGCGGCGAACCGAAGAGCGGCGGCGGTGTCGGAAGAGGTGGGTCTGGTTTCGGGTACGGAGGATCGGATGTGAG
GCCCGGAGACTGGTACTGCAGCGTGGGAAATTGTGGAGCTCACAATTTTGCAAGCCGATCAAGCTGCTTCAAATGTGGGGCTTTCAAAGACGACATGTCGGCCTT
CGACTTCGATATTCCTCGTCCTAGTCCTAGAGGGATTTCCCCATTTGCTTTTGCCAGCCCCGCTCGTGCTGCTGCCTCCGCTTGGAAGTCCGGTGACTGGATTTG
TGCAAGGTCGGGTTGCAATGAACATAACTTTGCAAGCAGGATGGAGTGCTTTAGATGCAGTGCTCCGAGAGACTCCTACTAACAAAACTAGCCAAGCCAAAATCC
TCCTTCATCATCAAGTTTTGGGTATGCTCTCAACTGAGAAAAATTTCAAAGAGACTTCATAACCTGCACTCTACATTTTTCTTCTCCCTCTCTCTCTCTCTCTCT
CTCTCTCTTTTTGTTTTCTGGTTTTGTAACTTTTTT
Protein sequenceShow/hide protein sequence
MSRPGDWNCRSCQHLNFQRRDMCQRCGEPKSGGGVGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPFAFASP
ARAAASAWKSGDWICARSGCNEHNFASRMECFRCSAPRDSY