; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MELO3C019042 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C019042
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Genome locationchr08:10333948..10334510
RNA-Seq ExpressionMELO3C019042
SyntenyMELO3C019042
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043564.1 retrotransposon protein [Cucumis melo var. makuwa]7.4e-5676.64Show/hide
Query:  MMAEKLPGTNIQASPTIDCRVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIVERDLFDSWVKSHPATKGLLHKSFPYYDDLTYVFGKDRATGARSETFV
        MM +KL  TNIQ S  +DCRVKSLKK   +   MRGPSCSGFGWNE+FQCII ERDLFD+WVKSHP  +GLLHKSFPYYDDL+YVF KDRAT AR ETF 
Subjt:  MMAEKLPGTNIQASPTIDCRVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIVERDLFDSWVKSHPATKGLLHKSFPYYDDLTYVFGKDRATGARSETFV

Query:  DVGSNVPNMFNDTIPLGDSHDEDIPTMYSQGVHISPD
        DVGSNV NMFND +PLGDS+D+DIP MYSQGVHISPD
Subjt:  DVGSNVPNMFNDTIPLGDSHDEDIPTMYSQGVHISPD

KAA0062747.1 retrotransposon protein [Cucumis melo var. makuwa]1.3e-6095.69Show/hide
Query:  HAIAEMRGPSCSGFGWNEEFQCIIVERDLFDSWVKSHPATKGLLHKSFPYYDDLTYVFGKDRATGARSETFVDVGSNVPNMFNDTIPLGDSHDEDIPTMY
        H   EMRGPSCSGFGWNEEFQCII ERDLFDSWVKSHPATKGLLHKSFPYYDDL+YVFGKDRATGARSETFVDVGSNVPNMFNDTIPLGDSHDEDIPTMY
Subjt:  HAIAEMRGPSCSGFGWNEEFQCIIVERDLFDSWVKSHPATKGLLHKSFPYYDDLTYVFGKDRATGARSETFVDVGSNVPNMFNDTIPLGDSHDEDIPTMY

Query:  SQGVHISPDEMFGIRA
        SQGVHISPDEMFGIRA
Subjt:  SQGVHISPDEMFGIRA

KAA0064022.1 retrotransposon protein [Cucumis melo var. makuwa]1.3e-5263.12Show/hide
Query:  MMAEKLPGTNIQASPTIDCRVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIVERDLFDSWVKSHPATKGLLHKSFPYYDDLTYVFGKDRATGARSETFV
        MMA+KLPG  ++A+  IDCR+K+LK+T+ AIAEMRGP+CSGFGWN+E +CI+ E++LFD+WV+SHPA KGLL+KSFPYYD+LTYVFG+DRATG  +ETF 
Subjt:  MMAEKLPGTNIQASPTIDCRVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIVERDLFDSWVKSHPATKGLLHKSFPYYDDLTYVFGKDRATGARSETFV

Query:  DVGSNVPNMFNDTIPLGDSHDEDIPTMYSQGVHISPDEMFGIRAGQASERRNCSSGSKRK
        DVGSN P    D   +GD  +ED P +YSQGV IS D++   R  +ASE R  SSGSKRK
Subjt:  DVGSNVPNMFNDTIPLGDSHDEDIPTMYSQGVHISPDEMFGIRAGQASERRNCSSGSKRK

KAA0066208.1 retrotransposon protein [Cucumis melo var. makuwa]1.3e-5263.75Show/hide
Query:  MMAEKLPGTNIQASPTIDCRVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIVERDLFDSWVKSHPATKGLLHKSFPYYDDLTYVFGKDRATGARSETFV
        MMAEKLPG  ++A+  IDCR+K+LK+T+ AIAEMRGP+CSGFGWN+E +CII E++LFD+WV+SHPA KGLL+K FPYYD+LTYVFG+DRATG  +ETF 
Subjt:  MMAEKLPGTNIQASPTIDCRVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIVERDLFDSWVKSHPATKGLLHKSFPYYDDLTYVFGKDRATGARSETFV

Query:  DVGSNVPNMFNDTIPLGDSHDEDIPTMYSQGVHISPDEMFGIRAGQASERRNCSSGSKRK
        DVGSN P    D   +GD  +ED P +YSQGV IS D++   R  +ASE R  SSGSKRK
Subjt:  DVGSNVPNMFNDTIPLGDSHDEDIPTMYSQGVHISPDEMFGIRAGQASERRNCSSGSKRK

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]4.6e-8292.5Show/hide
Query:  MMAEKLPGTNIQASPTIDCRVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIVERDLFDSWVKSHPATKGLLHKSFPYYDDLTYVFGKDRATGARSETFV
        MMAEKLPGTNIQ S TIDC VKSLKKTYHAIAEMRGPSCSGFGWNEEFQCII ERDLFDSW+KSHPA KGLLHKSFPYYDDL+YVFGKDRATGARSETF 
Subjt:  MMAEKLPGTNIQASPTIDCRVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIVERDLFDSWVKSHPATKGLLHKSFPYYDDLTYVFGKDRATGARSETFV

Query:  DVGSNVPNMFNDTIPLGDSHDEDIPTMYSQGVHISPDEMFGIRAGQASERRNCSSGSKRK
        +VGSNV NMFNDTIPLGDSHDEDIPTMYSQGVH+SPDEMFGIRAGQASERRNCSS SKRK
Subjt:  DVGSNVPNMFNDTIPLGDSHDEDIPTMYSQGVHISPDEMFGIRAGQASERRNCSSGSKRK

TrEMBL top hitse value%identityAlignment
A0A1S3B4L3 uncharacterized protein LOC1034859532.2e-8292.5Show/hide
Query:  MMAEKLPGTNIQASPTIDCRVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIVERDLFDSWVKSHPATKGLLHKSFPYYDDLTYVFGKDRATGARSETFV
        MMAEKLPGTNIQ S TIDC VKSLKKTYHAIAEMRGPSCSGFGWNEEFQCII ERDLFDSW+KSHPA KGLLHKSFPYYDDL+YVFGKDRATGARSETF 
Subjt:  MMAEKLPGTNIQASPTIDCRVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIVERDLFDSWVKSHPATKGLLHKSFPYYDDLTYVFGKDRATGARSETFV

Query:  DVGSNVPNMFNDTIPLGDSHDEDIPTMYSQGVHISPDEMFGIRAGQASERRNCSSGSKRK
        +VGSNV NMFNDTIPLGDSHDEDIPTMYSQGVH+SPDEMFGIRAGQASERRNCSS SKRK
Subjt:  DVGSNVPNMFNDTIPLGDSHDEDIPTMYSQGVHISPDEMFGIRAGQASERRNCSSGSKRK

A0A5A7TJS2 Retrotransposon protein3.6e-5676.64Show/hide
Query:  MMAEKLPGTNIQASPTIDCRVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIVERDLFDSWVKSHPATKGLLHKSFPYYDDLTYVFGKDRATGARSETFV
        MM +KL  TNIQ S  +DCRVKSLKK   +   MRGPSCSGFGWNE+FQCII ERDLFD+WVKSHP  +GLLHKSFPYYDDL+YVF KDRAT AR ETF 
Subjt:  MMAEKLPGTNIQASPTIDCRVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIVERDLFDSWVKSHPATKGLLHKSFPYYDDLTYVFGKDRATGARSETFV

Query:  DVGSNVPNMFNDTIPLGDSHDEDIPTMYSQGVHISPD
        DVGSNV NMFND +PLGDS+D+DIP MYSQGVHISPD
Subjt:  DVGSNVPNMFNDTIPLGDSHDEDIPTMYSQGVHISPD

A0A5A7U0H7 Retrotransposon protein2.2e-8292.5Show/hide
Query:  MMAEKLPGTNIQASPTIDCRVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIVERDLFDSWVKSHPATKGLLHKSFPYYDDLTYVFGKDRATGARSETFV
        MMAEKLPGTNIQ S TIDC VKSLKKTYHAIAEMRGPSCSGFGWNEEFQCII ERDLFDSW+KSHPA KGLLHKSFPYYDDL+YVFGKDRATGARSETF 
Subjt:  MMAEKLPGTNIQASPTIDCRVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIVERDLFDSWVKSHPATKGLLHKSFPYYDDLTYVFGKDRATGARSETFV

Query:  DVGSNVPNMFNDTIPLGDSHDEDIPTMYSQGVHISPDEMFGIRAGQASERRNCSSGSKRK
        +VGSNV NMFNDTIPLGDSHDEDIPTMYSQGVH+SPDEMFGIRAGQASERRNCSS SKRK
Subjt:  DVGSNVPNMFNDTIPLGDSHDEDIPTMYSQGVHISPDEMFGIRAGQASERRNCSSGSKRK

A0A5A7V6Q9 Retrotransposon protein6.3e-5363.12Show/hide
Query:  MMAEKLPGTNIQASPTIDCRVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIVERDLFDSWVKSHPATKGLLHKSFPYYDDLTYVFGKDRATGARSETFV
        MMA+KLPG  ++A+  IDCR+K+LK+T+ AIAEMRGP+CSGFGWN+E +CI+ E++LFD+WV+SHPA KGLL+KSFPYYD+LTYVFG+DRATG  +ETF 
Subjt:  MMAEKLPGTNIQASPTIDCRVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIVERDLFDSWVKSHPATKGLLHKSFPYYDDLTYVFGKDRATGARSETFV

Query:  DVGSNVPNMFNDTIPLGDSHDEDIPTMYSQGVHISPDEMFGIRAGQASERRNCSSGSKRK
        DVGSN P    D   +GD  +ED P +YSQGV IS D++   R  +ASE R  SSGSKRK
Subjt:  DVGSNVPNMFNDTIPLGDSHDEDIPTMYSQGVHISPDEMFGIRAGQASERRNCSSGSKRK

A0A5D3DG22 Retrotransposon protein6.3e-6195.69Show/hide
Query:  HAIAEMRGPSCSGFGWNEEFQCIIVERDLFDSWVKSHPATKGLLHKSFPYYDDLTYVFGKDRATGARSETFVDVGSNVPNMFNDTIPLGDSHDEDIPTMY
        H   EMRGPSCSGFGWNEEFQCII ERDLFDSWVKSHPATKGLLHKSFPYYDDL+YVFGKDRATGARSETFVDVGSNVPNMFNDTIPLGDSHDEDIPTMY
Subjt:  HAIAEMRGPSCSGFGWNEEFQCIIVERDLFDSWVKSHPATKGLLHKSFPYYDDLTYVFGKDRATGARSETFVDVGSNVPNMFNDTIPLGDSHDEDIPTMY

Query:  SQGVHISPDEMFGIRA
        SQGVHISPDEMFGIRA
Subjt:  SQGVHISPDEMFGIRA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G24960.2 unknown protein8.9e-0727.03Show/hide
Query:  RVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIVERDLFDSWVKSHPATKGLLHKSFPYYDDLTYVFGKDRATG
        R K L++ Y+ I  +     +GF W+     +I + D++++++++HP  +    K+ P Y +L ++FGK+ + G
Subjt:  RVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIVERDLFDSWVKSHPATKGLLHKSFPYYDDLTYVFGKDRATG

AT4G02210.1 unknown protein1.8e-0427.69Show/hide
Query:  GFGWNEEFQCIIVERDLFDSWVKSHPATKGLLHKSFPYYDDLTYVFGKDRATGARSETFVDVGSN
        GF W++  Q ++ +  ++D ++K HP ++    KS P Y DL  V+  D  +  ++E  +  G +
Subjt:  GFGWNEEFQCIIVERDLFDSWVKSHPATKGLLHKSFPYYDDLTYVFGKDRATGARSETFVDVGSN

AT4G02210.2 unknown protein1.8e-0427.69Show/hide
Query:  GFGWNEEFQCIIVERDLFDSWVKSHPATKGLLHKSFPYYDDLTYVFGKDRATGARSETFVDVGSN
        GF W++  Q ++ +  ++D ++K HP ++    KS P Y DL  V+  D  +  ++E  +  G +
Subjt:  GFGWNEEFQCIIVERDLFDSWVKSHPATKGLLHKSFPYYDDLTYVFGKDRATGARSETFVDVGSN

AT5G27260.1 unknown protein1.4e-0725.6Show/hide
Query:  RVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIVERDLFDSWVKSHPATKGLLHKSFPYYDDLTYVFGKDRATGARSETFVD--------VGSNVPNMFN
        R+K LK  Y +  +++  S SGFGW+   +      +++  ++K+HP  K L + +F ++D+L  +FG+  ATG  +    D         G N    + 
Subjt:  RVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIVERDLFDSWVKSHPATKGLLHKSFPYYDDLTYVFGKDRATGARSETFVD--------VGSNVPNMFN

Query:  DTIPLGDSHDEDIPTMYSQGVHISP
        D     + ++ D  T +    H +P
Subjt:  DTIPLGDSHDEDIPTMYSQGVHISP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGGCAGAGAAGTTGCCCGGCACTAATATCCAAGCATCACCGACAATAGATTGTCGTGTGAAATCTCTTAAAAAAACCTACCATGCAATTGCAGAAATGAGGGGCCC
ATCATGTAGTGGCTTTGGATGGAATGAAGAATTCCAATGCATCATCGTAGAACGGGATTTGTTTGATAGTTGGGTTAAGAGTCATCCTGCAACCAAAGGCCTTCTACACA
AATCATTTCCATATTATGATGATCTGACCTATGTCTTTGGCAAAGATCGGGCAACAGGAGCACGTTCAGAGACCTTTGTTGATGTAGGATCTAATGTGCCAAACATGTTT
AATGACACAATTCCCCTTGGTGATTCACATGATGAAGACATCCCGACGATGTATAGCCAAGGAGTGCATATATCACCAGATGAGATGTTTGGAATACGTGCAGGTCAAGC
AAGTGAGAGAAGAAATTGTTCAAGTGGAAGTAAAAGGAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGATGGCAGAGAAGTTGCCCGGCACTAATATCCAAGCATCACCGACAATAGATTGTCGTGTGAAATCTCTTAAAAAAACCTACCATGCAATTGCAGAAATGAGGGGCCC
ATCATGTAGTGGCTTTGGATGGAATGAAGAATTCCAATGCATCATCGTAGAACGGGATTTGTTTGATAGTTGGGTTAAGAGTCATCCTGCAACCAAAGGCCTTCTACACA
AATCATTTCCATATTATGATGATCTGACCTATGTCTTTGGCAAAGATCGGGCAACAGGAGCACGTTCAGAGACCTTTGTTGATGTAGGATCTAATGTGCCAAACATGTTT
AATGACACAATTCCCCTTGGTGATTCACATGATGAAGACATCCCGACGATGTATAGCCAAGGAGTGCATATATCACCAGATGAGATGTTTGGAATACGTGCAGGTCAAGC
AAGTGAGAGAAGAAATTGTTCAAGTGGAAGTAAAAGGAAATGA
Protein sequenceShow/hide protein sequence
MMAEKLPGTNIQASPTIDCRVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIVERDLFDSWVKSHPATKGLLHKSFPYYDDLTYVFGKDRATGARSETFVDVGSNVPNMF
NDTIPLGDSHDEDIPTMYSQGVHISPDEMFGIRAGQASERRNCSSGSKRK