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MELO3C019979 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C019979
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
Description40S ribosomal protein S18
Genome locationchr03:19759500..19761361
RNA-Seq ExpressionMELO3C019979
SyntenyMELO3C019979
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005829 - cytosol (cellular component)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001892 - Ribosomal protein S13
IPR010979 - Ribosomal protein S13-like, H2TH
IPR018269 - Ribosomal protein S13, conserved site
IPR027437 - 30s ribosomal protein S13, C-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046827.1 40S ribosomal protein S18 isoform X1 [Cucumis melo var. makuwa]7.6e-64100Show/hide
Query:  MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHY
        MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHY
Subjt:  MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHY

Query:  WGLRVRGQHTKTTGRRGKTVGVSKKR
        WGLRVRGQHTKTTGRRGKTVGVSKKR
Subjt:  WGLRVRGQHTKTTGRRGKTVGVSKKR

KAA0059528.1 40S ribosomal protein S18 isoform X1 [Cucumis melo var. makuwa]7.6e-64100Show/hide
Query:  MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHY
        MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHY
Subjt:  MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHY

Query:  WGLRVRGQHTKTTGRRGKTVGVSKKR
        WGLRVRGQHTKTTGRRGKTVGVSKKR
Subjt:  WGLRVRGQHTKTTGRRGKTVGVSKKR

XP_004139687.1 40S ribosomal protein S18 [Cucumis sativus]7.6e-64100Show/hide
Query:  MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHY
        MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHY
Subjt:  MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHY

Query:  WGLRVRGQHTKTTGRRGKTVGVSKKR
        WGLRVRGQHTKTTGRRGKTVGVSKKR
Subjt:  WGLRVRGQHTKTTGRRGKTVGVSKKR

XP_012073942.1 40S ribosomal protein S18 [Jatropha curcas]9.9e-6499.21Show/hide
Query:  MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHY
        MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMV+VANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHY
Subjt:  MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHY

Query:  WGLRVRGQHTKTTGRRGKTVGVSKKR
        WGLRVRGQHTKTTGRRGKTVGVSKKR
Subjt:  WGLRVRGQHTKTTGRRGKTVGVSKKR

XP_022133825.1 40S ribosomal protein S18 [Momordica charantia]7.6e-64100Show/hide
Query:  MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHY
        MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHY
Subjt:  MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHY

Query:  WGLRVRGQHTKTTGRRGKTVGVSKKR
        WGLRVRGQHTKTTGRRGKTVGVSKKR
Subjt:  WGLRVRGQHTKTTGRRGKTVGVSKKR

TrEMBL top hitse value%identityAlignment
A0A0A0K7Z7 Uncharacterized protein3.7e-64100Show/hide
Query:  MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHY
        MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHY
Subjt:  MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHY

Query:  WGLRVRGQHTKTTGRRGKTVGVSKKR
        WGLRVRGQHTKTTGRRGKTVGVSKKR
Subjt:  WGLRVRGQHTKTTGRRGKTVGVSKKR

A0A1S3CH47 40S ribosomal protein S183.7e-64100Show/hide
Query:  MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHY
        MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHY
Subjt:  MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHY

Query:  WGLRVRGQHTKTTGRRGKTVGVSKKR
        WGLRVRGQHTKTTGRRGKTVGVSKKR
Subjt:  WGLRVRGQHTKTTGRRGKTVGVSKKR

A0A5A7UWI6 40S ribosomal protein S18 isoform X13.7e-64100Show/hide
Query:  MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHY
        MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHY
Subjt:  MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHY

Query:  WGLRVRGQHTKTTGRRGKTVGVSKKR
        WGLRVRGQHTKTTGRRGKTVGVSKKR
Subjt:  WGLRVRGQHTKTTGRRGKTVGVSKKR

A0A5D3BZG0 40S ribosomal protein S18 isoform X13.7e-64100Show/hide
Query:  MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHY
        MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHY
Subjt:  MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHY

Query:  WGLRVRGQHTKTTGRRGKTVGVSKKR
        WGLRVRGQHTKTTGRRGKTVGVSKKR
Subjt:  WGLRVRGQHTKTTGRRGKTVGVSKKR

A0A6J1BWC2 40S ribosomal protein S183.7e-64100Show/hide
Query:  MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHY
        MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHY
Subjt:  MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHY

Query:  WGLRVRGQHTKTTGRRGKTVGVSKKR
        WGLRVRGQHTKTTGRRGKTVGVSKKR
Subjt:  WGLRVRGQHTKTTGRRGKTVGVSKKR

SwissProt top hitse value%identityAlignment
P34788 40S ribosomal protein S189.3e-6596.03Show/hide
Query:  MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHY
        MFALTSIKGIGRR ANIVCKKADVDMNKRAGEL+AAE+DNLM +VANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHY
Subjt:  MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHY

Query:  WGLRVRGQHTKTTGRRGKTVGVSKKR
        WGLRVRGQHTKTTGRRGKTVGVSKKR
Subjt:  WGLRVRGQHTKTTGRRGKTVGVSKKR

Q8ISP0 40S ribosomal protein S181.9e-5478.57Show/hide
Query:  MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHY
        MFALTSIKG+GRR++NIVCKKAD+D++KRAGEL+  E++ L+ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N+LD KLR+DLERLKKIR HRGLRHY
Subjt:  MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHY

Query:  WGLRVRGQHTKTTGRRGKTVGVSKKR
        WGLRVRGQHTKTTGRRG+TVGVSKK+
Subjt:  WGLRVRGQHTKTTGRRGKTVGVSKKR

Q8IT98 40S ribosomal protein S181.7e-5376.98Show/hide
Query:  MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHY
        MFA+T+IKG+GRR+AN+VCKKADVD+ KRAGEL+  E++ ++ +++NPRQ+KIP+WFLNRQKD KDGKYSQV+SNALD KLR+DLERLKKIR HRGLRHY
Subjt:  MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHY

Query:  WGLRVRGQHTKTTGRRGKTVGVSKKR
        WGLRVRGQHTKTTGRRG+TVGV+KK+
Subjt:  WGLRVRGQHTKTTGRRGKTVGVSKKR

Q8JGS9 40S ribosomal protein S181.5e-5174.4Show/hide
Query:  FALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYW
        FA+T+IKG+GRR+A++V +KAD+D+NKRAGELT  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR HRGLRH+W
Subjt:  FALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYW

Query:  GLRVRGQHTKTTGRRGKTVGVSKKR
        GLRVRGQHTKTTGRRG+TVGVSKK+
Subjt:  GLRVRGQHTKTTGRRGKTVGVSKKR

Q90YQ5 40S ribosomal protein S185.9e-5173.6Show/hide
Query:  FALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYW
        FA+T+IKG+GRR+A++V +KAD+D++KRAGELT  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR HRGLRH+W
Subjt:  FALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYW

Query:  GLRVRGQHTKTTGRRGKTVGVSKKR
        GLRVRGQHTKTTGRRG+TVGVSKK+
Subjt:  GLRVRGQHTKTTGRRGKTVGVSKKR

Arabidopsis top hitse value%identityAlignment
AT1G22780.1 Ribosomal protein S13/S18 family6.6e-6696.03Show/hide
Query:  MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHY
        MFALTSIKGIGRR ANIVCKKADVDMNKRAGEL+AAE+DNLM +VANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHY
Subjt:  MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHY

Query:  WGLRVRGQHTKTTGRRGKTVGVSKKR
        WGLRVRGQHTKTTGRRGKTVGVSKKR
Subjt:  WGLRVRGQHTKTTGRRGKTVGVSKKR

AT1G34030.1 Ribosomal protein S13/S18 family6.6e-6696.03Show/hide
Query:  MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHY
        MFALTSIKGIGRR ANIVCKKADVDMNKRAGEL+AAE+DNLM +VANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHY
Subjt:  MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHY

Query:  WGLRVRGQHTKTTGRRGKTVGVSKKR
        WGLRVRGQHTKTTGRRGKTVGVSKKR
Subjt:  WGLRVRGQHTKTTGRRGKTVGVSKKR

AT4G09800.1 S18 ribosomal protein6.6e-6696.03Show/hide
Query:  MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHY
        MFALTSIKGIGRR ANIVCKKADVDMNKRAGEL+AAE+DNLM +VANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHY
Subjt:  MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHY

Query:  WGLRVRGQHTKTTGRRGKTVGVSKKR
        WGLRVRGQHTKTTGRRGKTVGVSKKR
Subjt:  WGLRVRGQHTKTTGRRGKTVGVSKKR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCGCTCTTACTTCCATCAAAGGTATTGGAAGGCGTTTCGCCAACATTGTCTGCAAAAAAGCCGATGTCGACATGAACAAGAGAGCTGGTGAATTAACTGCT
GCCGAGCTGGACAATCTCATGGTGGTTGTTGCCAACCCCCGACAGTTCAAAATCCCCGATTGGTTTTTGAACAGACAGAAGGATTACAAGGATGGAAAGTATTCA
CAGGTTGTGTCTAATGCTCTTGACATGAAGCTGAGAGACGACTTGGAGCGTTTGAAGAAGATCAGGAACCACCGTGGTCTGAGGCATTACTGGGGTCTTCGTGTC
CGTGGTCAGCACACCAAGACTACTGGTCGCCGAGGGAAGACTGTTGGTGTCTCTAAGAAGCGTTAA
mRNA sequenceShow/hide mRNA sequence
AGAACAGCCCTAATATAAAACCCTAATTTTGAGCTTTGTTCACTTGGTAAGTCGTCCGTTTCGTTGCAGCCTCTTAGCCAAGGAGAAGAAGCATCAGAACGAAGA
CGCTCAACCTCTACTCTCAACAATGGTAAACCCTAACGCTCTCTTTCTTCTTCATCTCCGTTCTTCTATTTCTTCTTATTCTTTCTCGGATCAATCACTTTCTCT
ACCCATTTTGATTGTCGATTCAGTCGTTGGTAGCGAACGAAGATTTCCAGCACATTTTGCGTGTGCTCAACACAAACGTTGATGGGAAACAGAAGATCATGTTCG
CTCTTACTTCCATCAAAGGTATTGGAAGGCGTTTCGCCAACATTGTCTGCAAAAAAGCCGATGTCGACATGAACAAGAGAGCTGGTGAATTAACTGCTGCCGAGC
TGGACAATCTCATGGTGGTTGTTGCCAACCCCCGACAGTTCAAAATCCCCGATTGGTTTTTGAACAGACAGAAGGATTACAAGGATGGAAAGTATTCACAGGTTG
TGTCTAATGCTCTTGACATGAAGCTGAGAGACGACTTGGAGCGTTTGAAGAAGATCAGGAACCACCGTGGTCTGAGGCATTACTGGGGTCTTCGTGTCCGTGGTC
AGCACACCAAGACTACTGGTCGCCGAGGGAAGACTGTTGGTGTCTCTAAGAAGCGTTAAACAATGTCTGTTTTTATTTTGCTTGACAAGCAAATTTTCTGTTGGA
TGCAATATTTCAGATTAATGGAATTAGTTGTTTGAGATTTGGTTTAGAACTTTTTGGATTTGGCTGTGGGGTTTCTTAAGCCTCTCTCTGCCAGGTTATATTTCA
CATCGATGATTCATTTTTGCTCCTTATAATAGAGATTGAAATCCCAGTTGAGTTATTTGTTATTCTCCATTATCTGCTTCGCATTGTGTATTGGTGTTTACTGTT
GATTAATGTTATAGCCATTTGATAA
Protein sequenceShow/hide protein sequence
MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRV
RGQHTKTTGRRGKTVGVSKKR