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MELO3C020019.jh1 (gene) of Melon (Harukei-3) v1.41 genome

Gene IDMELO3C020019.jh1
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionRetrotransposon protein
Genome locationchr03:19452367..19452669
RNA-Seq ExpressionMELO3C020019.jh1
SyntenyMELO3C020019.jh1
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048533.1 retrotransposon protein [Cucumis melo var. makuwa]3.87e-1344.79Show/hide
Query:  MGRFAETFADIGSNKPLSMSGLTCRMRTISYLCVAKELTCSRRMYTHHKLLVRQSGRSSELKRKRGSQREGKIEVIHMTLECTNDQLMTIAEWSAQ
        +GRFAETF D+GSN+P    G         +  VA                     RSSE KRKRGSQRE  +E IH+  +CTNDQL TIAEW A+
Subjt:  MGRFAETFADIGSNKPLSMSGLTCRMRTISYLCVAKELTCSRRMYTHHKLLVRQSGRSSELKRKRGSQREGKIEVIHMTLECTNDQLMTIAEWSAQ

KAA0051922.1 retrotransposon protein [Cucumis melo var. makuwa]5.27e-1546.39Show/hide
Query:  GRFAETFADIGSNKPLSMSGLTCRMRTISYLCVAKE-LTCSRRMYTHHKLLVRQSGR--SSELKRKRGSQREGKIEVIHMTLECTNDQLMTIAEWSA
        GRF ETF D+GSN+P    G         +  V  + +  S+      +  +   GR  SSELK KRG+Q+EG++EVIHM LECTND L TIAEW A
Subjt:  GRFAETFADIGSNKPLSMSGLTCRMRTISYLCVAKE-LTCSRRMYTHHKLLVRQSGR--SSELKRKRGSQREGKIEVIHMTLECTNDQLMTIAEWSA

KAA0051964.1 retrotransposon protein [Cucumis melo var. makuwa]5.01e-6599Show/hide
Query:  MGRFAETFADIGSNKPLSMSGLTCRMRTISYLCVAKELTCSRRMYTHHKLLVRQSGRSSELKRKRGSQREGKIEVIHMTLECTNDQLMTIAEWSAQRPCQ
        MGRF+ETFADIGSNKPLSMSGLTCRMRTISYLCVAKELTCSRRMYTHHKLLVRQSGRSSELKRKRGSQREGKIEVIHMTLECTNDQLMTIAEWSAQRPCQ
Subjt:  MGRFAETFADIGSNKPLSMSGLTCRMRTISYLCVAKELTCSRRMYTHHKLLVRQSGRSSELKRKRGSQREGKIEVIHMTLECTNDQLMTIAEWSAQRPCQ

KAA0058317.1 retrotransposon protein [Cucumis melo var. makuwa]4.90e-1345.74Show/hide
Query:  GRFAETFADIGSNKPLSMSGLTCRMRTISY---LCVAKELTCSRRMYTHHKLLVRQSGRSSELKRKRGSQREGKIEVIHMTLECTNDQLMTIAE
        G F ETFAD+GSN+ +             Y   + +++E  C+ R       ++    RS+  KRKRGSQREGK++VIHMTLECTNDQL TI E
Subjt:  GRFAETFADIGSNKPLSMSGLTCRMRTISY---LCVAKELTCSRRMYTHHKLLVRQSGRSSELKRKRGSQREGKIEVIHMTLECTNDQLMTIAE

KAA0066074.1 retrotransposon protein [Cucumis melo var. makuwa]5.03e-1448.39Show/hide
Query:  MGRFAETFADIGSNKPLSMSGLTCRMRTISYLCVAKE-LTCSRRMYTHHKLLVRQSGRSSELKRKRGSQREGKIEVIHMTLECTNDQLMTIAE
        MGRFAETF D+GSN+P+   G         +  V  + +  S++     +      GR    KRKRGSQ+EG+IEVIHM LECTN+QLMTIAE
Subjt:  MGRFAETFADIGSNKPLSMSGLTCRMRTISYLCVAKE-LTCSRRMYTHHKLLVRQSGRSSELKRKRGSQREGKIEVIHMTLECTNDQLMTIAE

TrEMBL top hitse value%identityAlignment
A0A5A7VFJ2 Retrotransposon protein2.44e-1448.39Show/hide
Query:  MGRFAETFADIGSNKPLSMSGLTCRMRTISYLCVAKE-LTCSRRMYTHHKLLVRQSGRSSELKRKRGSQREGKIEVIHMTLECTNDQLMTIAE
        MGRFAETF D+GSN+P+   G         +  V  + +  S++     +      GR    KRKRGSQ+EG+IEVIHM LECTN+QLMTIAE
Subjt:  MGRFAETFADIGSNKPLSMSGLTCRMRTISYLCVAKE-LTCSRRMYTHHKLLVRQSGRSSELKRKRGSQREGKIEVIHMTLECTNDQLMTIAE

A0A5D3C2G6 Retrotransposon protein2.43e-6599Show/hide
Query:  MGRFAETFADIGSNKPLSMSGLTCRMRTISYLCVAKELTCSRRMYTHHKLLVRQSGRSSELKRKRGSQREGKIEVIHMTLECTNDQLMTIAEWSAQRPCQ
        MGRF+ETFADIGSNKPLSMSGLTCRMRTISYLCVAKELTCSRRMYTHHKLLVRQSGRSSELKRKRGSQREGKIEVIHMTLECTNDQLMTIAEWSAQRPCQ
Subjt:  MGRFAETFADIGSNKPLSMSGLTCRMRTISYLCVAKELTCSRRMYTHHKLLVRQSGRSSELKRKRGSQREGKIEVIHMTLECTNDQLMTIAEWSAQRPCQ

A0A5D3CDT3 Retrotransposon protein2.37e-1345.74Show/hide
Query:  GRFAETFADIGSNKPLSMSGLTCRMRTISY---LCVAKELTCSRRMYTHHKLLVRQSGRSSELKRKRGSQREGKIEVIHMTLECTNDQLMTIAE
        G F ETFAD+GSN+ +             Y   + +++E  C+ R     +  +R    S+  KRKRGSQREGK++VIHMTLECTNDQL TI E
Subjt:  GRFAETFADIGSNKPLSMSGLTCRMRTISY---LCVAKELTCSRRMYTHHKLLVRQSGRSSELKRKRGSQREGKIEVIHMTLECTNDQLMTIAE

A0A5D3CLE8 Retrotransposon protein2.55e-1546.39Show/hide
Query:  GRFAETFADIGSNKPLSMSGLTCRMRTISYLCVAKE-LTCSRRMYTHHKLLVRQSGR--SSELKRKRGSQREGKIEVIHMTLECTNDQLMTIAEWSA
        GRF ETF D+GSN+P    G         +  V  + +  S+      +  +   GR  SSELK KRG+Q+EG++EVIHM LECTND L TIAEW A
Subjt:  GRFAETFADIGSNKPLSMSGLTCRMRTISYLCVAKE-LTCSRRMYTHHKLLVRQSGR--SSELKRKRGSQREGKIEVIHMTLECTNDQLMTIAEWSA

A0A5D3DX58 Retrotransposon protein1.88e-1344.79Show/hide
Query:  MGRFAETFADIGSNKPLSMSGLTCRMRTISYLCVAKELTCSRRMYTHHKLLVRQSGRSSELKRKRGSQREGKIEVIHMTLECTNDQLMTIAEWSAQ
        +GRFAETF D+GSN+P    G         +  VA                     RSSE KRKRGSQRE  +E IH+  +CTNDQL TIAEW A+
Subjt:  MGRFAETFADIGSNKPLSMSGLTCRMRTISYLCVAKELTCSRRMYTHHKLLVRQSGRSSELKRKRGSQREGKIEVIHMTLECTNDQLMTIAEWSAQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTCGCTTCGCTGAGACATTCGCCGATATTGGATCTAACAAGCCATTGAGTATGAGTGGTTTGACATGCCGGATGAGAACGATTTCCTATCTATGTGTAGCTAAGGA
ATTGACATGTTCTAGGAGGATGTACACACATCACAAACTTCTCGTACGTCAGAGTGGCCGATCGAGCGAATTGAAGAGGAAGAGGGGAAGCCAGCGAGAGGGCAAGATTG
AAGTCATACATATGACCCTCGAGTGTACCAATGACCAACTCATGACGATTGCCGAGTGGTCTGCACAACGCCCTTGCCAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTCGCTTCGCTGAGACATTCGCCGATATTGGATCTAACAAGCCATTGAGTATGAGTGGTTTGACATGCCGGATGAGAACGATTTCCTATCTATGTGTAGCTAAGGA
ATTGACATGTTCTAGGAGGATGTACACACATCACAAACTTCTCGTACGTCAGAGTGGCCGATCGAGCGAATTGAAGAGGAAGAGGGGAAGCCAGCGAGAGGGCAAGATTG
AAGTCATACATATGACCCTCGAGTGTACCAATGACCAACTCATGACGATTGCCGAGTGGTCTGCACAACGCCCTTGCCAATGA
Protein sequenceShow/hide protein sequence
MGRFAETFADIGSNKPLSMSGLTCRMRTISYLCVAKELTCSRRMYTHHKLLVRQSGRSSELKRKRGSQREGKIEVIHMTLECTNDQLMTIAEWSAQRPCQ