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MELO3C020687 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C020687
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Genome locationchr12:2653546..2654411
RNA-Seq ExpressionMELO3C020687
SyntenyMELO3C020687
Gene Ontology termsGO:0016020 - membrane (cellular component)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033884.1 retrotransposon protein [Cucumis melo var. makuwa]1.2e-73100Show/hide
Query:  MSDGNDIEFPFMYSQGIDISQDDVRTSQPACTSDGRIRSSESKRKRGSQREGELDVINMALKCMNDQLRTIIEWPTRPFANETFVRQEFLRLLCEMPDLS
        MSDGNDIEFPFMYSQGIDISQDDVRTSQPACTSDGRIRSSESKRKRGSQREGELDVINMALKCMNDQLRTIIEWPTRPFANETFVRQEFLRLLCEMPDLS
Subjt:  MSDGNDIEFPFMYSQGIDISQDDVRTSQPACTSDGRIRSSESKRKRGSQREGELDVINMALKCMNDQLRTIIEWPTRPFANETFVRQEFLRLLCEMPDLS

Query:  SLDRELCQRQLMCSIDDMRSFVEMTDEERKNFCRVFLRDVSR
        SLDRELCQRQLMCSIDDMRSFVEMTDEERKNFCRVFLRDVSR
Subjt:  SLDRELCQRQLMCSIDDMRSFVEMTDEERKNFCRVFLRDVSR

KAA0050190.1 retrotransposon protein [Cucumis melo var. makuwa]2.0e-4466.9Show/hide
Query:  MSDGNDIEFPFMYSQGIDISQDDVRTSQPACTSDGRIRSSESKRKRGSQREGELDVINMALKCMNDQLRTIIEWPTRPFANETFVRQEFLRLLCEMPDLS
        M DGN+ EFP MYSQGID+SQ+DVR S+P+ TS GRIRSS SKRKR SQ++GE++VI+MA++C NDQLRTI EWP R  AN+T VRQE LRLL  MP+L+
Subjt:  MSDGNDIEFPFMYSQGIDISQDDVRTSQPACTSDGRIRSSESKRKRGSQREGELDVINMALKCMNDQLRTIIEWPTRPFANETFVRQEFLRLLCEMPDLS

Query:  SLDRELCQRQLMCSIDDMRSFVEMTDEERKNFCRVFLRDVSR
        SLDR LCQR L+  +DDMR F++M D+ER+NFCRV L D+SR
Subjt:  SLDRELCQRQLMCSIDDMRSFVEMTDEERKNFCRVFLRDVSR

KAA0050806.1 retrotransposon protein [Cucumis melo var. makuwa]1.9e-4266.2Show/hide
Query:  MSDGNDIEFPFMYSQGIDISQDDVRTSQPACTSDGRIRSSESKRKRGSQREGELDVINMALKCMNDQLRTIIEWPTRPFANETFVRQEFLRLLCEMPDLS
        MSDGN+ EF  +YSQGID+SQ+DV  SQPA TS+ R RSS  KRKRGSQ++GE+ VI+MALKCMNDQL+ I+EW  R  AN T V QEF+RLL EM +LS
Subjt:  MSDGNDIEFPFMYSQGIDISQDDVRTSQPACTSDGRIRSSESKRKRGSQREGELDVINMALKCMNDQLRTIIEWPTRPFANETFVRQEFLRLLCEMPDLS

Query:  SLDRELCQRQLMCSIDDMRSFVEMTDEERKNFCRVFLRDVSR
        +LDR LCQR LM  +DDM  FV+MT++ER+NFCRV LRD SR
Subjt:  SLDRELCQRQLMCSIDDMRSFVEMTDEERKNFCRVFLRDVSR

KAA0063862.1 retrotransposon protein [Cucumis melo var. makuwa]4.7e-3859.86Show/hide
Query:  MSDGNDIEFPFMYSQGIDISQDDVRTSQPACTSDGRIRSSESKRKRGSQREGELDVINMALKCMNDQLRTIIEWPTRPFANETFVRQEFLRLLCEMPDLS
        M DGN+ EFP +Y+QGID+S DDVRTSQP+CTS GR RSS SKRK+GSQR+ +++ I++AL   N+QLR I EWP R  AN+  VR +F R+LCEMP+L+
Subjt:  MSDGNDIEFPFMYSQGIDISQDDVRTSQPACTSDGRIRSSESKRKRGSQREGELDVINMALKCMNDQLRTIIEWPTRPFANETFVRQEFLRLLCEMPDLS

Query:  SLDRELCQRQLMCSIDDMRSFVEMTDEERKNFCRVFLRDVSR
        SLDR L QR L+  +DD+R FV M ++ER+ FCRV LRD++R
Subjt:  SLDRELCQRQLMCSIDDMRSFVEMTDEERKNFCRVFLRDVSR

KAA0067987.1 retrotransposon protein [Cucumis melo var. makuwa]6.2e-3860.56Show/hide
Query:  MSDGNDIEFPFMYSQGIDISQDDVRTSQPACTSDGRIRSSESKRKRGSQREGELDVINMALKCMNDQLRTIIEWPTRPFANETFVRQEFLRLLCEMPDLS
        M DGN  +FP +YSQGID+SQDDVR S+P+  S+GR RSS SKRKRGSQR+ EL+ I++AL   N+QLR I EWPTR  AN+  VR EF R+L EMP+L+
Subjt:  MSDGNDIEFPFMYSQGIDISQDDVRTSQPACTSDGRIRSSESKRKRGSQREGELDVINMALKCMNDQLRTIIEWPTRPFANETFVRQEFLRLLCEMPDLS

Query:  SLDRELCQRQLMCSIDDMRSFVEMTDEERKNFCRVFLRDVSR
        SLDR L QR L+  +DD+R FV M ++ER+ FCRV LRD+ R
Subjt:  SLDRELCQRQLMCSIDDMRSFVEMTDEERKNFCRVFLRDVSR

TrEMBL top hitse value%identityAlignment
A0A5A7U4I8 Retrotransposon protein9.6e-4566.9Show/hide
Query:  MSDGNDIEFPFMYSQGIDISQDDVRTSQPACTSDGRIRSSESKRKRGSQREGELDVINMALKCMNDQLRTIIEWPTRPFANETFVRQEFLRLLCEMPDLS
        M DGN+ EFP MYSQGID+SQ+DVR S+P+ TS GRIRSS SKRKR SQ++GE++VI+MA++C NDQLRTI EWP R  AN+T VRQE LRLL  MP+L+
Subjt:  MSDGNDIEFPFMYSQGIDISQDDVRTSQPACTSDGRIRSSESKRKRGSQREGELDVINMALKCMNDQLRTIIEWPTRPFANETFVRQEFLRLLCEMPDLS

Query:  SLDRELCQRQLMCSIDDMRSFVEMTDEERKNFCRVFLRDVSR
        SLDR LCQR L+  +DDMR F++M D+ER+NFCRV L D+SR
Subjt:  SLDRELCQRQLMCSIDDMRSFVEMTDEERKNFCRVFLRDVSR

A0A5A7U9D5 Retrotransposon protein9.0e-4366.2Show/hide
Query:  MSDGNDIEFPFMYSQGIDISQDDVRTSQPACTSDGRIRSSESKRKRGSQREGELDVINMALKCMNDQLRTIIEWPTRPFANETFVRQEFLRLLCEMPDLS
        MSDGN+ EF  +YSQGID+SQ+DV  SQPA TS+ R RSS  KRKRGSQ++GE+ VI+MALKCMNDQL+ I+EW  R  AN T V QEF+RLL EM +LS
Subjt:  MSDGNDIEFPFMYSQGIDISQDDVRTSQPACTSDGRIRSSESKRKRGSQREGELDVINMALKCMNDQLRTIIEWPTRPFANETFVRQEFLRLLCEMPDLS

Query:  SLDRELCQRQLMCSIDDMRSFVEMTDEERKNFCRVFLRDVSR
        +LDR LCQR LM  +DDM  FV+MT++ER+NFCRV LRD SR
Subjt:  SLDRELCQRQLMCSIDDMRSFVEMTDEERKNFCRVFLRDVSR

A0A5A7VL88 Retrotransposon protein3.0e-3860.56Show/hide
Query:  MSDGNDIEFPFMYSQGIDISQDDVRTSQPACTSDGRIRSSESKRKRGSQREGELDVINMALKCMNDQLRTIIEWPTRPFANETFVRQEFLRLLCEMPDLS
        M DGN  +FP +YSQGID+SQDDVR S+P+  S+GR RSS SKRKRGSQR+ EL+ I++AL   N+QLR I EWPTR  AN+  VR EF R+L EMP+L+
Subjt:  MSDGNDIEFPFMYSQGIDISQDDVRTSQPACTSDGRIRSSESKRKRGSQREGELDVINMALKCMNDQLRTIIEWPTRPFANETFVRQEFLRLLCEMPDLS

Query:  SLDRELCQRQLMCSIDDMRSFVEMTDEERKNFCRVFLRDVSR
        SLDR L QR L+  +DD+R FV M ++ER+ FCRV LRD+ R
Subjt:  SLDRELCQRQLMCSIDDMRSFVEMTDEERKNFCRVFLRDVSR

A0A5D3B9A8 Retrotransposon protein2.3e-3859.86Show/hide
Query:  MSDGNDIEFPFMYSQGIDISQDDVRTSQPACTSDGRIRSSESKRKRGSQREGELDVINMALKCMNDQLRTIIEWPTRPFANETFVRQEFLRLLCEMPDLS
        M DGN+ EFP +Y+QGID+S DDVRTSQP+CTS GR RSS SKRK+GSQR+ +++ I++AL   N+QLR I EWP R  AN+  VR +F R+LCEMP+L+
Subjt:  MSDGNDIEFPFMYSQGIDISQDDVRTSQPACTSDGRIRSSESKRKRGSQREGELDVINMALKCMNDQLRTIIEWPTRPFANETFVRQEFLRLLCEMPDLS

Query:  SLDRELCQRQLMCSIDDMRSFVEMTDEERKNFCRVFLRDVSR
        SLDR L QR L+  +DD+R FV M ++ER+ FCRV LRD++R
Subjt:  SLDRELCQRQLMCSIDDMRSFVEMTDEERKNFCRVFLRDVSR

A0A5D3BQI7 Retrotransposon protein5.8e-74100Show/hide
Query:  MSDGNDIEFPFMYSQGIDISQDDVRTSQPACTSDGRIRSSESKRKRGSQREGELDVINMALKCMNDQLRTIIEWPTRPFANETFVRQEFLRLLCEMPDLS
        MSDGNDIEFPFMYSQGIDISQDDVRTSQPACTSDGRIRSSESKRKRGSQREGELDVINMALKCMNDQLRTIIEWPTRPFANETFVRQEFLRLLCEMPDLS
Subjt:  MSDGNDIEFPFMYSQGIDISQDDVRTSQPACTSDGRIRSSESKRKRGSQREGELDVINMALKCMNDQLRTIIEWPTRPFANETFVRQEFLRLLCEMPDLS

Query:  SLDRELCQRQLMCSIDDMRSFVEMTDEERKNFCRVFLRDVSR
        SLDRELCQRQLMCSIDDMRSFVEMTDEERKNFCRVFLRDVSR
Subjt:  SLDRELCQRQLMCSIDDMRSFVEMTDEERKNFCRVFLRDVSR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAGATGGAAACGATATAGAGTTTCCATTTATGTACAGCCAGGGGATTGACATATCCCAAGATGATGTACGCACATCACAACCTGCTTGCACGTCAGACGGT
AGGATCAGATCGAGCGAATCCAAGCGAAAGAGGGGAAGCCAACGGGAGGGTGAGCTTGATGTGATAAATATGGCCTTGAAGTGTATGAATGACCAACTCAGGACC
ATTATCGAGTGGCCTACGCGCCCCTTTGCCAATGAGACCTTTGTTCGCCAGGAATTCTTACGCCTATTGTGTGAGATGCCCGACCTAAGCAGTTTGGATAGGGAG
TTGTGCCAAAGGCAGCTCATGTGTAGTATCGACGACATGCGTAGTTTCGTAGAGATGACTGACGAAGAGAGGAAGAACTTCTGTAGAGTCTTCTTACGAGATGTC
TCGAGATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCAGAAAAGTTACCTGGATGTAGTGTTCGAGCCACCACTTTAATAGTCTGCACAATTAAGACACTTAAGCGGACCTTCCAAGCTATCACAGAAATGCGTGAG
CCAGCGTGCAGTGGGTTCAAATGGAACGATGAGGCAAAGTACATCATTGTCGAGAAGGAAGTGTTCGACAACTGGATTAGGGTAAGGAAACTAATCAAAGCCGAA
GAGCCTCCTTAACAAACTCTTTTCCTATTACGACGAACTTGCATATGTGTTCGAGTGGGATAGGGCGACGGGTCGCTTTGTAGAGACATTCGCCGACATTGGGTC
TAATGAGCCTGCTGGGTATGAGGGGTTTGACATGTCAGATGGAAACGATATAGAGTTTCCATTTATGTACAGCCAGGGGATTGACATATCCCAAGATGATGTACG
CACATCACAACCTGCTTGCACGTCAGACGGTAGGATCAGATCGAGCGAATCCAAGCGAAAGAGGGGAAGCCAACGGGAGGGTGAGCTTGATGTGATAAATATGGC
CTTGAAGTGTATGAATGACCAACTCAGGACCATTATCGAGTGGCCTACGCGCCCCTTTGCCAATGAGACCTTTGTTCGCCAGGAATTCTTACGCCTATTGTGTGA
GATGCCCGACCTAAGCAGTTTGGATAGGGAGTTGTGCCAAAGGCAGCTCATGTGTAGTATCGACGACATGCGTAGTTTCGTAGAGATGACTGACGAAGAGAGGAA
GAACTTCTGTAGAGTCTTCTTACGAGATGTCTCGAGATAG
Protein sequenceShow/hide protein sequence
MSDGNDIEFPFMYSQGIDISQDDVRTSQPACTSDGRIRSSESKRKRGSQREGELDVINMALKCMNDQLRTIIEWPTRPFANETFVRQEFLRLLCEMPDLSSLDRE
LCQRQLMCSIDDMRSFVEMTDEERKNFCRVFLRDVSR