CuGenDBv2

Gene ID	MELO3C021332
Organism	Cucumis melo DHL92 (Melon (DHL92) v4)
Description	40S ribosomal protein S21
Genome location	chr11:27967214..27969088
RNA-Seq Expression	MELO3C021332
Synteny	MELO3C021332
Gene Ontology terms	GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process) GO:0000461 - endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process) GO:0006412 - translation (biological process) GO:0006979 - response to oxidative stress (biological process) GO:0098869 - cellular oxidant detoxification (biological process) GO:0022627 - cytosolic small ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0004601 - peroxidase activity (molecular function) GO:0020037 - heme binding (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR001931 - Ribosomal protein S21e IPR018279 - Ribosomal protein S21e, conserved site IPR038579 - Ribosomal protein S21e superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7028978.1 40S ribosomal protein S21-2 [Cucurbita argyrosperma subsp. argyrosperma]

1.1e-26

100

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ

XP_004134210.2 40S ribosomal protein S21-2 [Cucumis sativus]

1.1e-26

100

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ

XP_004143089.1 40S ribosomal protein S21-2 [Cucumis sativus]

1.1e-26

100

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ

XP_022950628.1 40S ribosomal protein S21-2-like [Cucurbita moschata]

1.1e-26

100

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ

XP_022973757.1 40S ribosomal protein S21-2-like [Cucurbita maxima]

2.4e-26

98.36

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLD+NGIYTGQFSTFALCGFIRAQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KHD3 40S ribosomal protein S21

5.2e-27

100

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ

A0A0A0L7W3 40S ribosomal protein S21

5.2e-27

100

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ

A0A1S4DSM1 40S ribosomal protein S21

5.2e-27

100

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ

A0A5D3CXC9 40S ribosomal protein S21

5.2e-27

100

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ

A0A6J1GFE6 40S ribosomal protein S21

5.2e-27

100

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ

SwissProt top hits

e value

%identity

Alignment

P35687 40S ribosomal protein S21

6.7e-24

78.69

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
        MQNEEG++ +LY+PRKCSATNR+IT+KDHASVQINIGH+DENG+Y G+F+TFAL GFIRAQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ

Q3E902 40S ribosomal protein S21-2

2.2e-27

88.52

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
        MQNEEG++TELYIPRKCSATNRLITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ

Q41852 40S ribosomal protein S21

1.5e-23

78.69

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
        MQNEEGK  +LY+PRKCSATNR+IT+KDHASVQINIGHLD NG+Y G F+TFAL GF+RAQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ

Q9M337 40S ribosomal protein S21-1

9.4e-26

81.97

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
        M+N+ G++TELYIPRKCSATNR+ITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ

Q9SMI2 40S ribosomal protein S21

2.4e-21

72.13

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDEN-GIYTGQFSTFALCGFIRA
        MQN+EGKI +LYIPRKCSATNRLI++ DHA+VQIN+GH+D N G+YTG ++TFALCGF+R+
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDEN-GIYTGQFSTFALCGFIRA

Arabidopsis top hits

e value

%identity

Alignment

AT3G53890.1 Ribosomal protein S21e

6.6e-27

81.97

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
        M+N+ G++TELYIPRKCSATNR+ITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ

AT3G53890.2 Ribosomal protein S21e

6.6e-27

81.97

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
        M+N+ G++TELYIPRKCSATNR+ITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ

AT5G27700.1 Ribosomal protein S21e

1.6e-28

88.52

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
        MQNEEG++TELYIPRKCSATNRLITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ

Sequences

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CDS sequence

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ATGCAGAACGAAGAGGGAAAGATCACCGAGCTCTACATTCCCAGGAAGTGCTCTGCCACAAACCGACTCATTACTTCTAAGGATCACGCCTCGGTTCAGATTAACATTGG
GCACTTGGACGAGAATGGCATCTACACAGGCCAATTCTCCACTTTCGCTCTCTGCGGTTTCATCCGTGCTCAGGTATAA

mRNA sequence

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CTAATCTTCTTTTTCGTTCGCGGCCGACGGATCCTTCGCTGCCACTGATTTTTGATCAAACATCAAGGCCAATATGCAGAACGAAGAGGGAAAGATCACCGAGCTCTACA
TTCCCAGGAAGTGCTCTGCCACAAACCGACTCATTACTTCTAAGGATCACGCCTCGGTTCAGATTAACATTGGGCACTTGGACGAGAATGGCATCTACACAGGCCAATTC
TCCACTTTCGCTCTCTGCGGTTTCATCCGTGCTCAGGTATAATTGTTGGAAATCCAACCGTTCTCATTGGAGAGGATAAATAAAACTTAAATGGAGATGCCGACAGTGCA
TTGGATAGGTTGTGGCAGAAGAAGAAAGTAGAAGTTCGCCAACAGTAGAAAATCCAAAATTTCTTCTACTTGAAATATTATGTTTCTAATTTAGTGTTCCATTGAGAATT
TATGAATATTGAGAGAGCCTAGCCTGCCTTTTGCTGCTAAAATTTGTAGTTTTTGTTGGAGTCTTTATGTGATGAAGCTGGTTTTTGATAATTTCTTACTGGATTCATAT
TTGCTTGTTTTGGTTAATCGATTTTTTTTT

Protein sequence

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MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQV

MELO3C021332 (gene) of Melon (DHL92) v4 genome