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MELO3C021360 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C021360
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
Descriptionpentatricopeptide repeat-containing protein At1g06270
Genome locationchr11:27769828..27772842
RNA-Seq ExpressionMELO3C021360
SyntenyMELO3C021360
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0063642.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]8.9e-3265Show/hide
Query:  VPDLESYGTLIHAATAVRLADKAVELLKEMVVKVKLMPRQGTIINVVAALRANRE-----------------------------------------VTMG
        VPDLESYGTLI AATAVR  DKAVELLKEMVVKVKLMPRQ TIINVVAALRANRE                                         V M 
Subjt:  VPDLESYGTLIHAATAVRLADKAVELLKEMVVKVKLMPRQGTIINVVAALRANRE-----------------------------------------VTMG

Query:  MTDRGFIPYIKVRQKVVEGLAGIGEVELASAVRRRFVELG
        MTDRGFIPYIKVRQKVVEGL GIGE+ELASAVRRRFVELG
Subjt:  MTDRGFIPYIKVRQKVVEGLAGIGEVELASAVRRRFVELG
XP_004139374.1 pentatricopeptide repeat-containing protein At1g06270 [Cucumis sativus]1.9e-3466.43Show/hide
Query:  VPDLESYGTLIHAATAVRLADKAVELLKEMVVKVKLMPRQGTIINVVAALRANRE-----------------------------------------VTMG
        +PDLESYGTLIHAATAVR  DKAVELLKEMVVKVKLMPRQGTI NVVAALR NRE                                         VTMG
Subjt:  VPDLESYGTLIHAATAVRLADKAVELLKEMVVKVKLMPRQGTIINVVAALRANRE-----------------------------------------VTMG

Query:  MTDRGFIPYIKVRQKVVEGLAGIGEVELASAVRRRFVELG
        MTDRGFIPYIKVRQ+VVEGLAGIGEVELASAVRRRFVELG
Subjt:  MTDRGFIPYIKVRQKVVEGLAGIGEVELASAVRRRFVELG
XP_008455557.1 PREDICTED: pentatricopeptide repeat-containing protein At1g06270 [Cucumis melo]8.9e-3265Show/hide
Query:  VPDLESYGTLIHAATAVRLADKAVELLKEMVVKVKLMPRQGTIINVVAALRANRE-----------------------------------------VTMG
        VPDLESYGTLI AATAVR  DKAVELLKEMVVKVKLMPRQ TIINVVAALRANRE                                         V M 
Subjt:  VPDLESYGTLIHAATAVRLADKAVELLKEMVVKVKLMPRQGTIINVVAALRANRE-----------------------------------------VTMG

Query:  MTDRGFIPYIKVRQKVVEGLAGIGEVELASAVRRRFVELG
        MTDRGFIPYIKVRQKVVEGL GIGE+ELASAVRRRFVELG
Subjt:  MTDRGFIPYIKVRQKVVEGLAGIGEVELASAVRRRFVELG
XP_022140758.1 pentatricopeptide repeat-containing protein At1g06270 [Momordica charantia]2.0e-2860.43Show/hide
Query:  VPDLESYGTLIHAATAVRLADKAVELLKEMVVKVKLMPRQGTIINVVAALRANRE-----------------------------------------VTMG
        +PDLESYGTLI A+TAVR   +AVELLKEMVVKVKL PRQGTIINVVAALRANRE                                         V MG
Subjt:  VPDLESYGTLIHAATAVRLADKAVELLKEMVVKVKLMPRQGTIINVVAALRANRE-----------------------------------------VTMG

Query:  MTDRGFIPYIKVRQKVVEGLAGIGEVELASAVRRRFVEL
        MT RGFIPYI+VRQKVVEGLA +GEVELASAVRRRF EL
Subjt:  MTDRGFIPYIKVRQKVVEGLAGIGEVELASAVRRRFVEL
XP_038902935.1 pentatricopeptide repeat-containing protein At1g06270 [Benincasa hispida]1.1e-2962.32Show/hide
Query:  PDLESYGTLIHAATAVRLADKAVELLKEMVVKVKLMPRQGTIINVVAALRANRE-----------------------------------------VTMGM
        PDLESYGTLI A TAVR  DKAVELLKEMV+KVKL PRQGTIINVVAALRANRE                                         VTMGM
Subjt:  PDLESYGTLIHAATAVRLADKAVELLKEMVVKVKLMPRQGTIINVVAALRANRE-----------------------------------------VTMGM

Query:  TDRGFIPYIKVRQKVVEGLAGIGEVELASAVRRRFVEL
        T+RGFIPYIKVRQKVVEGLAGIGE E ASAVRR+FV L
Subjt:  TDRGFIPYIKVRQKVVEGLAGIGEVELASAVRRRFVEL
TrEMBL top hitse value%identityAlignment
A0A0A0LFL3 Uncharacterized protein9.2e-3566.43Show/hide
Query:  VPDLESYGTLIHAATAVRLADKAVELLKEMVVKVKLMPRQGTIINVVAALRANRE-----------------------------------------VTMG
        +PDLESYGTLIHAATAVR  DKAVELLKEMVVKVKLMPRQGTI NVVAALR NRE                                         VTMG
Subjt:  VPDLESYGTLIHAATAVRLADKAVELLKEMVVKVKLMPRQGTIINVVAALRANRE-----------------------------------------VTMG

Query:  MTDRGFIPYIKVRQKVVEGLAGIGEVELASAVRRRFVELG
        MTDRGFIPYIKVRQ+VVEGLAGIGEVELASAVRRRFVELG
Subjt:  MTDRGFIPYIKVRQKVVEGLAGIGEVELASAVRRRFVELG
A0A1S3C1B6 pentatricopeptide repeat-containing protein At1g062704.3e-3265Show/hide
Query:  VPDLESYGTLIHAATAVRLADKAVELLKEMVVKVKLMPRQGTIINVVAALRANRE-----------------------------------------VTMG
        VPDLESYGTLI AATAVR  DKAVELLKEMVVKVKLMPRQ TIINVVAALRANRE                                         V M 
Subjt:  VPDLESYGTLIHAATAVRLADKAVELLKEMVVKVKLMPRQGTIINVVAALRANRE-----------------------------------------VTMG

Query:  MTDRGFIPYIKVRQKVVEGLAGIGEVELASAVRRRFVELG
        MTDRGFIPYIKVRQKVVEGL GIGE+ELASAVRRRFVELG
Subjt:  MTDRGFIPYIKVRQKVVEGLAGIGEVELASAVRRRFVELG
A0A5D3D4C7 Pentatricopeptide repeat-containing protein4.3e-3265Show/hide
Query:  VPDLESYGTLIHAATAVRLADKAVELLKEMVVKVKLMPRQGTIINVVAALRANRE-----------------------------------------VTMG
        VPDLESYGTLI AATAVR  DKAVELLKEMVVKVKLMPRQ TIINVVAALRANRE                                         V M 
Subjt:  VPDLESYGTLIHAATAVRLADKAVELLKEMVVKVKLMPRQGTIINVVAALRANRE-----------------------------------------VTMG

Query:  MTDRGFIPYIKVRQKVVEGLAGIGEVELASAVRRRFVELG
        MTDRGFIPYIKVRQKVVEGL GIGE+ELASAVRRRFVELG
Subjt:  MTDRGFIPYIKVRQKVVEGLAGIGEVELASAVRRRFVELG
A0A6J1CIR0 pentatricopeptide repeat-containing protein At1g062709.9e-2960.43Show/hide
Query:  VPDLESYGTLIHAATAVRLADKAVELLKEMVVKVKLMPRQGTIINVVAALRANRE-----------------------------------------VTMG
        +PDLESYGTLI A+TAVR   +AVELLKEMVVKVKL PRQGTIINVVAALRANRE                                         V MG
Subjt:  VPDLESYGTLIHAATAVRLADKAVELLKEMVVKVKLMPRQGTIINVVAALRANRE-----------------------------------------VTMG

Query:  MTDRGFIPYIKVRQKVVEGLAGIGEVELASAVRRRFVEL
        MT RGFIPYI+VRQKVVEGLA +GEVELASAVRRRF EL
Subjt:  MTDRGFIPYIKVRQKVVEGLAGIGEVELASAVRRRFVEL
A0A6J1G5M7 pentatricopeptide repeat-containing protein At1g062704.9e-2858.27Show/hide
Query:  VPDLESYGTLIHAATAVRLADKAVELLKEMVVKVKLMPRQGTIINVVAALRANRE-----------------------------------------VTMG
        VPDLESYGTLI ++TAVR   +AVELLKEMVVKVKL PRQGT+INVVAALRANRE                                         V MG
Subjt:  VPDLESYGTLIHAATAVRLADKAVELLKEMVVKVKLMPRQGTIINVVAALRANRE-----------------------------------------VTMG

Query:  MTDRGFIPYIKVRQKVVEGLAGIGEVELASAVRRRFVEL
        MT++G+IPYI+VR KVVEGLAGIGE ELASAVRRRF EL
Subjt:  MTDRGFIPYIKVRQKVVEGLAGIGEVELASAVRRRFVEL
SwissProt top hitse value%identityAlignment
Q9LNC0 Pentatricopeptide repeat-containing protein At1g062703.2e-1641.01Show/hide
Query:  VPDLESYGTLIHAATAVRLADKAVELLKEMVVKVKLMPRQGTIINVVAALRANRE-----------------------------------------VTMG
        +PD+ESYG +I++    R     V+++KEMV K  + PR+G +  V AALRANRE                                         V M 
Subjt:  VPDLESYGTLIHAATAVRLADKAVELLKEMVVKVKLMPRQGTIINVVAALRANRE-----------------------------------------VTMG

Query:  MTDRGFIPYIKVRQKVVEGLAGIGEVELASAVRRRFVEL
        MTDRGFIPYIKVRQKVVE L  IGE +LA  VR+R  EL
Subjt:  MTDRGFIPYIKVRQKVVEGLAGIGEVELASAVRRRFVEL
Arabidopsis top hitse value%identityAlignment
AT1G06270.1 Pentatricopeptide repeat (PPR) superfamily protein2.3e-1741.01Show/hide
Query:  VPDLESYGTLIHAATAVRLADKAVELLKEMVVKVKLMPRQGTIINVVAALRANRE-----------------------------------------VTMG
        +PD+ESYG +I++    R     V+++KEMV K  + PR+G +  V AALRANRE                                         V M 
Subjt:  VPDLESYGTLIHAATAVRLADKAVELLKEMVVKVKLMPRQGTIINVVAALRANRE-----------------------------------------VTMG

Query:  MTDRGFIPYIKVRQKVVEGLAGIGEVELASAVRRRFVEL
        MTDRGFIPYIKVRQKVVE L  IGE +LA  VR+R  EL
Subjt:  MTDRGFIPYIKVRQKVVEGLAGIGEVELASAVRRRFVEL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTGCATCTTTGTTCGAGGAGAGTAAAGAGTACTTACGAGGGAGCCGCGCCGTCGTTCGCCGTCAAGCCAAGTACTGCTTATCCATCCAGTCGAGTTCCACT
CGTGGCCTGAGTTTCGTTCATCTATCTATCGTTCAAAGTCCAGTGTGGTCGACGGTTTGGTCGCCGGTGATCCGACGCCAATTTGGTTGTGCCGCGGGTTGCTAT
GAAGGTGGAAAGAAGAGGGTTAGAGAGAAAGAAGAGAAGACTTGGATAGAGGGTGAATTAATTGGGGATTTGAAAAACAATTTTAGCTTCAACTCCACTTCCTCA
CAGTTCAACAACTTAAATCGTGAAACTCATGGGGTATCGTCGCCGACTACCGCAGCCGTGTACTTCCGTCCGCCGGCCTGTGCAGTTCTGTCCGCCAGTACCTCG
CTCGAAATCCCAATTTGTCCATGGCTCTCTGCTTTTCTACACTCTTCAAAGCCCTTCACCCTTTCCCCTCTCTCTTCCAGTCCTCCAGAGGATTCTCAACTCTGG
TTGTGTCCCTTCCCCTCAGACCCATTTTCTACTTTCTTCTGCCTGGCTAAAACAACGGGTGTTCCTGACTTGGAGAGTTATGGCACCTTAATTCATGCAGCAACA
GCTGTTAGACTGGCTGACAAGGCAGTGGAATTGCTAAAAGAAATGGTTGTAAAAGTTAAGTTGATGCCAAGACAAGGAACGATTATTAATGTTGTGGCTGCGTTA
CGAGCAAACCGAGAGGTGACCATGGGGATGACAGACAGAGGGTTTATACCATATATCAAGGTCAGGCAAAAGGTTGTTGAGGGACTGGCTGGCATTGGGGAAGTG
GAACTTGCTTCTGCTGTAAGACGCAGATTTGTAGAGTTGGGTTTTCTTGATGAACTCAAATGCTTTGTACATGTAACCACCATTGCATCCCTGGTTCCCCGAGGT
CACATCGCAGTCTACAAGCTCTTGTTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTAAATAAAATATCAACTTTACTATTCATAAATTTCATATGGTCAGAAATTCCAAAAAAAAAAATCAAAATTTATATATCACAATACATAAACCCTAAATAAA
AAATACTCTAATTATATCAAATAAATGAATGCATATACCATATTATATATCAAATTTACTAAAAGAAAAAACGTATATGAGAGTATACTAAAGTTTGCGTGAACC
ATCCCCTGCTACCGTCACCATCACAATCTTTCGTTGTCTGGTCGTACGTTGCTCTACCCGCCGCCGTTAAGCTGGGTCCCTCATCATCATCGTCCAGCCGACTTG
TGTATTGTCTGAGTCCGCCATGTGTGCATCTTTGTTCGAGGAGAGTAAAGAGTACTTACGAGGGAGCCGCGCCGTCGTTCGCCGTCAAGCCAAGTACTGCTTATC
CATCCAGTCGAGTTCCACTCGTGGCCTGAGTTTCGTTCATCTATCTATCGTTCAAAGTCCAGTGTGGTCGACGGTTTGGTCGCCGGTGATCCGACGCCAATTTGG
TTGTGCCGCGGGTTGCTATGAAGGTGGAAAGAAGAGGGTTAGAGAGAAAGAAGAGAAGACTTGGATAGAGGGTGAATTAATTGGGGATTTGAAAAACAATTTTAG
CTTCAACTCCACTTCCTCACAGTTCAACAACTTAAATCGTGAAACTCATGGGGTATCGTCGCCGACTACCGCAGCCGTGTACTTCCGTCCGCCGGCCTGTGCAGT
TCTGTCCGCCAGTACCTCGCTCGAAATCCCAATTTGTCCATGGCTCTCTGCTTTTCTACACTCTTCAAAGCCCTTCACCCTTTCCCCTCTCTCTTCCAGTCCTCC
AGAGGATTCTCAACTCTGGTTGTGTCCCTTCCCCTCAGACCCATTTTCTACTTTCTTCTGCCTGGCTAAAACAACGGGTGTTCCTGACTTGGAGAGTTATGGCAC
CTTAATTCATGCAGCAACAGCTGTTAGACTGGCTGACAAGGCAGTGGAATTGCTAAAAGAAATGGTTGTAAAAGTTAAGTTGATGCCAAGACAAGGAACGATTAT
TAATGTTGTGGCTGCGTTACGAGCAAACCGAGAGGTGACCATGGGGATGACAGACAGAGGGTTTATACCATATATCAAGGTCAGGCAAAAGGTTGTTGAGGGACT
GGCTGGCATTGGGGAAGTGGAACTTGCTTCTGCTGTAAGACGCAGATTTGTAGAGTTGGGTTTTCTTGATGAACTCAAATGCTTTGTACATGTAACCACCATTGC
ATCCCTGGTTCCCCGAGGTCACATCGCAGTCTACAAGCTCTTGTTCTGA
Protein sequenceShow/hide protein sequence
MCASLFEESKEYLRGSRAVVRRQAKYCLSIQSSSTRGLSFVHLSIVQSPVWSTVWSPVIRRQFGCAAGCYEGGKKRVREKEEKTWIEGELIGDLKNNFSFNSTSS
QFNNLNRETHGVSSPTTAAVYFRPPACAVLSASTSLEIPICPWLSAFLHSSKPFTLSPLSSSPPEDSQLWLCPFPSDPFSTFFCLAKTTGVPDLESYGTLIHAAT
AVRLADKAVELLKEMVVKVKLMPRQGTIINVVAALRANREVTMGMTDRGFIPYIKVRQKVVEGLAGIGEVELASAVRRRFVELGFLDELKCFVHVTTIASLVPRG
HIAVYKLLF