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MELO3C021696 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C021696
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Genome locationchr02:10068511..10069640
RNA-Seq ExpressionMELO3C021696
SyntenyMELO3C021696
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR027806 - Harbinger transposase-derived nuclease domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025501.1 retrotransposon protein [Cucumis melo var. makuwa]1.5e-7160.96Show/hide
Query:  MDKGTFAILCHLLQTVSGLLSTEIVNVEKMVAMFLHVLAHDVKSRVIQREFVLSDETVSQHFNLVLLVVVRLYEELIKRHV--------------SNFLG
        MDK TFAILCHLL+ V+GL STEIV+VE+MVAMFLHVLAHD+K+RVIQREFV S ETVS+HFN++LLVV+RLYEELIKR V               N LG
Subjt:  MDKGTFAILCHLLQTVSGLLSTEIVNVEKMVAMFLHVLAHDVKSRVIQREFVLSDETVSQHFNLVLLVVVRLYEELIKRHV--------------SNFLG

Query:  ALDGTYIKVNIPTADRPTFRTHKGEIATNVLGVCNMKGDFVYVLAGWEGSVVDS-----------------------------------------EMTYC
        ALD TYIKVN+P  DRPTFRT KGEIA  VLGVC+ KGDF YVLAGWEGS  DS                                         EM YC
Subjt:  ALDGTYIKVNIPTADRPTFRTHKGEIATNVLGVCNMKGDFVYVLAGWEGSVVDS-----------------------------------------EMTYC

Query:  DDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAESMFTDWQLRNA
        +DVD+ DEGD  YATTT  E+I YIE TNEWSQWRD LAESMFT+WQLRNA
Subjt:  DDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAESMFTDWQLRNA

KAA0047370.1 retrotransposon protein [Cucumis melo var. makuwa]1.4e-7257.25Show/hide
Query:  MDKGTFAILCHLLQTVSGLLSTEIVNVEKMVAMFLHVLAHDVKSRVIQREFVLSDETVSQHFNLVLLVVVRLYEELIKR-------HVSNFLGALDGTYI
        MD+ TF ILCHLL+ V+GL STEIV+VE+MVAMFLHVLAHDVK+RVIQREFV S ETVS+HFN+VLL VV+LYEELIKR       ++ N LGALDGTYI
Subjt:  MDKGTFAILCHLLQTVSGLLSTEIVNVEKMVAMFLHVLAHDVKSRVIQREFVLSDETVSQHFNLVLLVVVRLYEELIKR-------HVSNFLGALDGTYI

Query:  KVNIPTADRPTFRTHKGEIATNVLGVCNMKGDFVYVLAGWEGSVVD------------------------------------------------------
        KVN+P  DR TFRT KGEIATNVLGVC+ KGDFVYVLAGWEGS  D                                                      
Subjt:  KVNIPTADRPTFRTHKGEIATNVLGVCNMKGDFVYVLAGWEGSVVD------------------------------------------------------

Query:  -------------------SEMTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAESMFTDWQLRNA
                           SEMTYC DVDDVDEGD  YATT   E+IHYIE TNEWSQWRD+LAESMFTDWQLRNA
Subjt:  -------------------SEMTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAESMFTDWQLRNA

KAA0055933.1 retrotransposon protein [Cucumis melo var. makuwa]7.6e-9576.28Show/hide
Query:  MDKGTFAILCHLLQTVSGLLSTEIVNVEKMVAMFLHVLAHDVKSRVIQREFVLSDETVSQHFNLVLLVVVRLYEELIKRHVS--------------NFLG
        MDKGTFAILCHLLQTVSGLLSTEIVNVEKMVAMFLHVLAHDVKSRVIQREFVLSDETVSQHFNLVLLVVVRLYEELIKRHVS              NFLG
Subjt:  MDKGTFAILCHLLQTVSGLLSTEIVNVEKMVAMFLHVLAHDVKSRVIQREFVLSDETVSQHFNLVLLVVVRLYEELIKRHVS--------------NFLG

Query:  ALDGTYIKVNIPTADRPTFRTHKGEIATNVLGVCNMKGDFVYVLAGWEGSVVDS----------------------------------------------
        ALDGTYIKVNIPTADRPTFRTHKGEIATNVLGVCNMKGDFVYVLAGWEGSVVDS                                              
Subjt:  ALDGTYIKVNIPTADRPTFRTHKGEIATNVLGVCNMKGDFVYVLAGWEGSVVDS----------------------------------------------

Query:  EMTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAESMFTDWQL
        EMTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAESMFTDWQL
Subjt:  EMTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAESMFTDWQL

TYK14046.1 retrotransposon protein [Cucumis melo var. makuwa]1.4e-7257.25Show/hide
Query:  MDKGTFAILCHLLQTVSGLLSTEIVNVEKMVAMFLHVLAHDVKSRVIQREFVLSDETVSQHFNLVLLVVVRLYEELIKR-------HVSNFLGALDGTYI
        MD+ TF ILCHLL+ V+GL STEIV+VE+MVAMFLHVLAHDVK+RVIQREFV S ETVS+HFN+VLL VV+LYEELIKR       ++ N LGALDGTYI
Subjt:  MDKGTFAILCHLLQTVSGLLSTEIVNVEKMVAMFLHVLAHDVKSRVIQREFVLSDETVSQHFNLVLLVVVRLYEELIKR-------HVSNFLGALDGTYI

Query:  KVNIPTADRPTFRTHKGEIATNVLGVCNMKGDFVYVLAGWEGSVVDS-----------------------------------------------------
        KVN+P  DR TFRT KGEIATNVLGVC+ KGDFVYVLAGWEGS  DS                                                     
Subjt:  KVNIPTADRPTFRTHKGEIATNVLGVCNMKGDFVYVLAGWEGSVVDS-----------------------------------------------------

Query:  --------------------EMTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAESMFTDWQLRNA
                            EMTYC DVDDVDEGD  YATT   E+IHYIE TNEWSQWRD+LAESMFTDWQLRNA
Subjt:  --------------------EMTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAESMFTDWQLRNA

XP_008450472.1 PREDICTED: uncharacterized protein LOC103492066 [Cucumis melo]3.3e-106100Show/hide
Query:  MDKGTFAILCHLLQTVSGLLSTEIVNVEKMVAMFLHVLAHDVKSRVIQREFVLSDETVSQHFNLVLLVVVRLYEELIKRHVSNFLGALDGTYIKVNIPTA
        MDKGTFAILCHLLQTVSGLLSTEIVNVEKMVAMFLHVLAHDVKSRVIQREFVLSDETVSQHFNLVLLVVVRLYEELIKRHVSNFLGALDGTYIKVNIPTA
Subjt:  MDKGTFAILCHLLQTVSGLLSTEIVNVEKMVAMFLHVLAHDVKSRVIQREFVLSDETVSQHFNLVLLVVVRLYEELIKRHVSNFLGALDGTYIKVNIPTA

Query:  DRPTFRTHKGEIATNVLGVCNMKGDFVYVLAGWEGSVVDSEMTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAESMFTDWQLRNA
        DRPTFRTHKGEIATNVLGVCNMKGDFVYVLAGWEGSVVDSEMTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAESMFTDWQLRNA
Subjt:  DRPTFRTHKGEIATNVLGVCNMKGDFVYVLAGWEGSVVDSEMTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAESMFTDWQLRNA

TrEMBL top hitse value%identityAlignment
A0A1S3BNP1 uncharacterized protein LOC1034920661.6e-106100Show/hide
Query:  MDKGTFAILCHLLQTVSGLLSTEIVNVEKMVAMFLHVLAHDVKSRVIQREFVLSDETVSQHFNLVLLVVVRLYEELIKRHVSNFLGALDGTYIKVNIPTA
        MDKGTFAILCHLLQTVSGLLSTEIVNVEKMVAMFLHVLAHDVKSRVIQREFVLSDETVSQHFNLVLLVVVRLYEELIKRHVSNFLGALDGTYIKVNIPTA
Subjt:  MDKGTFAILCHLLQTVSGLLSTEIVNVEKMVAMFLHVLAHDVKSRVIQREFVLSDETVSQHFNLVLLVVVRLYEELIKRHVSNFLGALDGTYIKVNIPTA

Query:  DRPTFRTHKGEIATNVLGVCNMKGDFVYVLAGWEGSVVDSEMTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAESMFTDWQLRNA
        DRPTFRTHKGEIATNVLGVCNMKGDFVYVLAGWEGSVVDSEMTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAESMFTDWQLRNA
Subjt:  DRPTFRTHKGEIATNVLGVCNMKGDFVYVLAGWEGSVVDSEMTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAESMFTDWQLRNA

A0A5A7TW41 Retrotransposon protein6.7e-7357.25Show/hide
Query:  MDKGTFAILCHLLQTVSGLLSTEIVNVEKMVAMFLHVLAHDVKSRVIQREFVLSDETVSQHFNLVLLVVVRLYEELIKR-------HVSNFLGALDGTYI
        MD+ TF ILCHLL+ V+GL STEIV+VE+MVAMFLHVLAHDVK+RVIQREFV S ETVS+HFN+VLL VV+LYEELIKR       ++ N LGALDGTYI
Subjt:  MDKGTFAILCHLLQTVSGLLSTEIVNVEKMVAMFLHVLAHDVKSRVIQREFVLSDETVSQHFNLVLLVVVRLYEELIKR-------HVSNFLGALDGTYI

Query:  KVNIPTADRPTFRTHKGEIATNVLGVCNMKGDFVYVLAGWEGSVVD------------------------------------------------------
        KVN+P  DR TFRT KGEIATNVLGVC+ KGDFVYVLAGWEGS  D                                                      
Subjt:  KVNIPTADRPTFRTHKGEIATNVLGVCNMKGDFVYVLAGWEGSVVD------------------------------------------------------

Query:  -------------------SEMTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAESMFTDWQLRNA
                           SEMTYC DVDDVDEGD  YATT   E+IHYIE TNEWSQWRD+LAESMFTDWQLRNA
Subjt:  -------------------SEMTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAESMFTDWQLRNA

A0A5A7UJ27 Retrotransposon protein3.7e-9576.28Show/hide
Query:  MDKGTFAILCHLLQTVSGLLSTEIVNVEKMVAMFLHVLAHDVKSRVIQREFVLSDETVSQHFNLVLLVVVRLYEELIKRHVS--------------NFLG
        MDKGTFAILCHLLQTVSGLLSTEIVNVEKMVAMFLHVLAHDVKSRVIQREFVLSDETVSQHFNLVLLVVVRLYEELIKRHVS              NFLG
Subjt:  MDKGTFAILCHLLQTVSGLLSTEIVNVEKMVAMFLHVLAHDVKSRVIQREFVLSDETVSQHFNLVLLVVVRLYEELIKRHVS--------------NFLG

Query:  ALDGTYIKVNIPTADRPTFRTHKGEIATNVLGVCNMKGDFVYVLAGWEGSVVDS----------------------------------------------
        ALDGTYIKVNIPTADRPTFRTHKGEIATNVLGVCNMKGDFVYVLAGWEGSVVDS                                              
Subjt:  ALDGTYIKVNIPTADRPTFRTHKGEIATNVLGVCNMKGDFVYVLAGWEGSVVDS----------------------------------------------

Query:  EMTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAESMFTDWQL
        EMTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAESMFTDWQL
Subjt:  EMTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAESMFTDWQL

A0A5D3BKS9 Retrotransposon protein7.5e-7260.96Show/hide
Query:  MDKGTFAILCHLLQTVSGLLSTEIVNVEKMVAMFLHVLAHDVKSRVIQREFVLSDETVSQHFNLVLLVVVRLYEELIKRHV--------------SNFLG
        MDK TFAILCHLL+ V+GL STEIV+VE+MVAMFLHVLAHD+K+RVIQREFV S ETVS+HFN++LLVV+RLYEELIKR V               N LG
Subjt:  MDKGTFAILCHLLQTVSGLLSTEIVNVEKMVAMFLHVLAHDVKSRVIQREFVLSDETVSQHFNLVLLVVVRLYEELIKRHV--------------SNFLG

Query:  ALDGTYIKVNIPTADRPTFRTHKGEIATNVLGVCNMKGDFVYVLAGWEGSVVDS-----------------------------------------EMTYC
        ALD TYIKVN+P  DRPTFRT KGEIA  VLGVC+ KGDF YVLAGWEGS  DS                                         EM YC
Subjt:  ALDGTYIKVNIPTADRPTFRTHKGEIATNVLGVCNMKGDFVYVLAGWEGSVVDS-----------------------------------------EMTYC

Query:  DDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAESMFTDWQLRNA
        +DVD+ DEGD  YATTT  E+I YIE TNEWSQWRD LAESMFT+WQLRNA
Subjt:  DDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAESMFTDWQLRNA

A0A5D3CUG9 Retrotransposon protein6.7e-7357.25Show/hide
Query:  MDKGTFAILCHLLQTVSGLLSTEIVNVEKMVAMFLHVLAHDVKSRVIQREFVLSDETVSQHFNLVLLVVVRLYEELIKR-------HVSNFLGALDGTYI
        MD+ TF ILCHLL+ V+GL STEIV+VE+MVAMFLHVLAHDVK+RVIQREFV S ETVS+HFN+VLL VV+LYEELIKR       ++ N LGALDGTYI
Subjt:  MDKGTFAILCHLLQTVSGLLSTEIVNVEKMVAMFLHVLAHDVKSRVIQREFVLSDETVSQHFNLVLLVVVRLYEELIKR-------HVSNFLGALDGTYI

Query:  KVNIPTADRPTFRTHKGEIATNVLGVCNMKGDFVYVLAGWEGSVVDS-----------------------------------------------------
        KVN+P  DR TFRT KGEIATNVLGVC+ KGDFVYVLAGWEGS  DS                                                     
Subjt:  KVNIPTADRPTFRTHKGEIATNVLGVCNMKGDFVYVLAGWEGSVVDS-----------------------------------------------------

Query:  --------------------EMTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAESMFTDWQLRNA
                            EMTYC DVDDVDEGD  YATT   E+IHYIE TNEWSQWRD+LAESMFTDWQLRNA
Subjt:  --------------------EMTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAESMFTDWQLRNA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G28950.1 unknown protein2.8e-1044.83Show/hide
Query:  LGALDGTYIKVNIPTADRPTFRTHKGEIATNVLGVCNMKGDFVYVLAGWEGSVVDSEM
        +GA+D T+I   +     P+FR  KG+I+ N+L  CN   +F+YVL+GWEGS  DS++
Subjt:  LGALDGTYIKVNIPTADRPTFRTHKGEIATNVLGVCNMKGDFVYVLAGWEGSVVDSEM

AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)1.2e-1833.12Show/hide
Query:  MDKGTFAILCHLLQTVSGLLSTEIVNVEKMVAMFLHVLAHDVKSRVIQREFVLSDETVSQHFNLVLLVVVRLYEELIK------------RHVSNFLGAL
        MDK  F  LC LLQT   L  T  + +E  +A+FL ++ H++++R +Q  F  S ET+S+HFN VL  V+ + ++  +             +  + +G +
Subjt:  MDKGTFAILCHLLQTVSGLLSTEIVNVEKMVAMFLHVLAHDVKSRVIQREFVLSDETVSQHFNLVLLVVVRLYEELIK------------RHVSNFLGAL

Query:  DGTYIKVNIPTADRPTFRTHKGEIATNVLGVCNMKGDFVYVLAGWEGSVVDSEM
        D  +I V +   ++  FR   G +  NVL   +    F YVLAGWEGS  D ++
Subjt:  DGTYIKVNIPTADRPTFRTHKGEIATNVLGVCNMKGDFVYVLAGWEGSVVDSEM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAAAGGAACATTCGCAATTCTATGTCATTTACTTCAGACTGTTTCTGGTCTTTTGTCGACCGAGATTGTTAATGTTGAGAAAATGGTAGCAATGTTCTTACACGT
TCTTGCCCATGATGTGAAGAGTCGCGTCATTCAAAGGGAATTTGTACTGTCCGATGAGACAGTATCTCAACATTTTAACCTCGTACTATTGGTTGTCGTTCGGCTATATG
AGGAGTTGATAAAGAGACATGTTTCGAATTTCCTTGGTGCGTTAGACGGGACCTACATAAAGGTGAACATCCCCACAGCAGATAGGCCTACATTTAGAACCCATAAGGGA
GAAATTGCCACAAACGTACTGGGCGTCTGCAACATGAAAGGGGATTTCGTTTATGTCCTCGCCGGTTGGGAAGGATCCGTCGTAGACTCAGAAATGACATATTGTGATGA
CGTTGATGACGTGGACGAGGGGGACTTCGCGTACGCGACGACCACCACTATAGAAGAAATTCACTACATTGAGATGACAAACGAGTGGTCTCAGTGGCGCGACAAACTAG
CTGAATCGATGTTCACAGATTGGCAGTTGCGTAACGCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGACAAAGGAACATTCGCAATTCTATGTCATTTACTTCAGACTGTTTCTGGTCTTTTGTCGACCGAGATTGTTAATGTTGAGAAAATGGTAGCAATGTTCTTACACGT
TCTTGCCCATGATGTGAAGAGTCGCGTCATTCAAAGGGAATTTGTACTGTCCGATGAGACAGTATCTCAACATTTTAACCTCGTACTATTGGTTGTCGTTCGGCTATATG
AGGAGTTGATAAAGAGACATGTTTCGAATTTCCTTGGTGCGTTAGACGGGACCTACATAAAGGTGAACATCCCCACAGCAGATAGGCCTACATTTAGAACCCATAAGGGA
GAAATTGCCACAAACGTACTGGGCGTCTGCAACATGAAAGGGGATTTCGTTTATGTCCTCGCCGGTTGGGAAGGATCCGTCGTAGACTCAGAAATGACATATTGTGATGA
CGTTGATGACGTGGACGAGGGGGACTTCGCGTACGCGACGACCACCACTATAGAAGAAATTCACTACATTGAGATGACAAACGAGTGGTCTCAGTGGCGCGACAAACTAG
CTGAATCGATGTTCACAGATTGGCAGTTGCGTAACGCTTAG
Protein sequenceShow/hide protein sequence
MDKGTFAILCHLLQTVSGLLSTEIVNVEKMVAMFLHVLAHDVKSRVIQREFVLSDETVSQHFNLVLLVVVRLYEELIKRHVSNFLGALDGTYIKVNIPTADRPTFRTHKG
EIATNVLGVCNMKGDFVYVLAGWEGSVVDSEMTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAESMFTDWQLRNA