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MELO3C021902 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C021902
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon gag protein
Genome locationchr11:5445694..5446028
RNA-Seq ExpressionMELO3C021902
SyntenyMELO3C021902
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054617.1 hypothetical protein E6C27_scaffold24G004190 [Cucumis melo var. makuwa]2.9e-1166.04Show/hide
Query:  SSSQICCSREDYHLKYFATKKIFIFNMLQSRRSSSPICCSREGGHLKSIAVEK
        +SSQICCS+ED+HLKY A +K+ I NMLQ RRSSS ICC+RE  HLK +A +K
Subjt:  SSSQICCSREDYHLKYFATKKIFIFNMLQSRRSSSPICCSREGGHLKSIAVEK

KAA0059640.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]8.6e-1160.32Show/hide
Query:  MLQLRRSSSQICCSREDYHLKYFATKKIFIFNMLQSRRSSSPICCSREGGHLKSIAVEKRSSS
        MLQ RRSSSQICC++E  HLKY A +K+ + NMLQ RRS S ICCSREG  LK +A  + + S
Subjt:  MLQLRRSSSQICCSREDYHLKYFATKKIFIFNMLQSRRSSSPICCSREGGHLKSIAVEKRSSS

KAA0060518.1 hypothetical protein E6C27_scaffold22G003700 [Cucumis melo var. makuwa]8.6e-1166.1Show/hide
Query:  MLQLRRSSSQICCSREDYHLKYFATKKIFIFNMLQSRRSSSPICCSREGGHLKSIAVEK
        ML  RR SSQIC SR+   LKY   +K+ I NMLQSRRSSS ICCSREG  LK +AVEK
Subjt:  MLQLRRSSSQICCSREDYHLKYFATKKIFIFNMLQSRRSSSPICCSREGGHLKSIAVEK

KAA0066592.1 hypothetical protein E6C27_scaffold25G001670 [Cucumis melo var. makuwa]5.0e-1166.1Show/hide
Query:  MLQLRRSSSQICCSREDYHLKYFATKKIFIFNMLQSRRSSSPICCSREGGHLKSIAVEK
        MLQLRRSS QICCSRE   LKY   +KI + NMLQSR SSS ICCS+E   LK +A+EK
Subjt:  MLQLRRSSSQICCSREDYHLKYFATKKIFIFNMLQSRRSSSPICCSREGGHLKSIAVEK

TYK08171.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]8.6e-1160.32Show/hide
Query:  MLQLRRSSSQICCSREDYHLKYFATKKIFIFNMLQSRRSSSPICCSREGGHLKSIAVEKRSSS
        MLQ RRSSSQICC++E  HLKY A +K+ + NMLQ RRS S ICCSREG  LK +A  + + S
Subjt:  MLQLRRSSSQICCSREDYHLKYFATKKIFIFNMLQSRRSSSPICCSREGGHLKSIAVEKRSSS

TrEMBL top hitse value%identityAlignment
A0A5A7UWX8 Ty3-gypsy retrotransposon protein4.2e-1160.32Show/hide
Query:  MLQLRRSSSQICCSREDYHLKYFATKKIFIFNMLQSRRSSSPICCSREGGHLKSIAVEKRSSS
        MLQ RRSSSQICC++E  HLKY A +K+ + NMLQ RRS S ICCSREG  LK +A  + + S
Subjt:  MLQLRRSSSQICCSREDYHLKYFATKKIFIFNMLQSRRSSSPICCSREGGHLKSIAVEKRSSS

A0A5A7VE10 Uncharacterized protein2.4e-1166.1Show/hide
Query:  MLQLRRSSSQICCSREDYHLKYFATKKIFIFNMLQSRRSSSPICCSREGGHLKSIAVEK
        MLQLRRSS QICCSRE   LKY   +KI + NMLQSR SSS ICCS+E   LK +A+EK
Subjt:  MLQLRRSSSQICCSREDYHLKYFATKKIFIFNMLQSRRSSSPICCSREGGHLKSIAVEK

A0A5D3BNW3 Uncharacterized protein4.2e-1166.1Show/hide
Query:  MLQLRRSSSQICCSREDYHLKYFATKKIFIFNMLQSRRSSSPICCSREGGHLKSIAVEK
        ML  RR SSQIC SR+   LKY   +K+ I NMLQSRRSSS ICCSREG  LK +AVEK
Subjt:  MLQLRRSSSQICCSREDYHLKYFATKKIFIFNMLQSRRSSSPICCSREGGHLKSIAVEK

A0A5D3C8K3 Ty3-gypsy retrotransposon protein4.2e-1160.32Show/hide
Query:  MLQLRRSSSQICCSREDYHLKYFATKKIFIFNMLQSRRSSSPICCSREGGHLKSIAVEKRSSS
        MLQ RRSSSQICC++E  HLKY A +K+ + NMLQ RRS S ICCSREG  LK +A  + + S
Subjt:  MLQLRRSSSQICCSREDYHLKYFATKKIFIFNMLQSRRSSSPICCSREGGHLKSIAVEKRSSS

A0A5D3DVX9 Uncharacterized protein1.4e-1166.04Show/hide
Query:  SSSQICCSREDYHLKYFATKKIFIFNMLQSRRSSSPICCSREGGHLKSIAVEK
        +SSQICCS+ED+HLKY A +K+ I NMLQ RRSSS ICC+RE  HLK +A +K
Subjt:  SSSQICCSREDYHLKYFATKKIFIFNMLQSRRSSSPICCSREGGHLKSIAVEK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGCAGCTGAGAAGATCATCGTCTCAAATATGTTGCAGTCGAGAAGATTATCATCTCAAATATTTTGCAACCAAGAAGATCTTCATCTTCAATATGTTGCAGTCAAG
AAGATCTTCATCTCCAATATGTTGTAGTCGAGAAGGTGGTCATCTCAAATCTATTGCAGTCGAGAAAAGATCATCATCTCCAATATGA
mRNA sequenceShow/hide mRNA sequence
TCATCTCAAATATGTTGCAGCTGAGAAGATCATCGTCTCAAATATGTTGCAGTCGAGAAGATTATCATCTCAAATATTTTGCAACCAAGAAGATCTTCATCTTCAATATG
TTGCAGTCAAGAAGATCTTCATCTCCAATATGTTGTAGTCGAGAAGGTGGTCATCTCAAATCTATTGCAGTCGAGAAAAGATCATCATCTCCAATATGAGACGATCATGA
TCTCCAATATTGACCATCGAGGTGATCATTCATCTCCAATGTGTTATAGCTTCAAGCATGATGATGATAGTACATCTCAGCCTCCAACTCTCCAAATGATGATGGTACAA
CTCCA
Protein sequenceShow/hide protein sequence
MLQLRRSSSQICCSREDYHLKYFATKKIFIFNMLQSRRSSSPICCSREGGHLKSIAVEKRSSSPI