CuGenDBv2

Gene ID	MELO3C022087
Organism	Cucumis melo DHL92 (Melon (DHL92) v4)
Description	DNA-directed RNA polymerase II subunit 4-like
Genome location	chr09:1209599..1213608
RNA-Seq Expression	MELO3C022087
Synteny	MELO3C022087
Gene Ontology terms	GO:0000288 - nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay (biological process) GO:0006367 - transcription initiation from RNA polymerase II promoter (biological process) GO:0031990 - mRNA export from nucleus in response to heat stress (biological process) GO:0034402 - recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex (biological process) GO:0045948 - positive regulation of translational initiation (biological process) GO:0000932 - P-body (cellular component) GO:0005665 - RNA polymerase II, core complex (cellular component) GO:0000166 - nucleotide binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function) GO:0031369 - translation initiation factor binding (molecular function)
InterPro domains	IPR005574 - RNA polymerase subunit RPB4/RPC9 IPR006590 - RNA polymerase Rpb4/RPC9, core IPR010997 - HRDC-like superfamily IPR038324 - Rpb4/RPC9 superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7033258.1 DNA-directed RNA polymerase II subunit 4 [Cucurbita argyrosperma subsp. argyrosperma]

6.1e-58

93.55

Show/hide

Query:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQISQVFEKSLQYVKRFSRYKNPDAVRQLCVLGNLCPETVEEATSIVPSLKT
        MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQ +EDP NQ+SQVFEKSLQYVKRFSRYKNPDAVRQLCVLGNLCPETVEEA ++VPSLK 
Subjt:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQISQVFEKSLQYVKRFSRYKNPDAVRQLCVLGNLCPETVEEATSIVPSLKT

Query:  KGRVHDDEAIEKMLNDLSLIKKFE
        KGRVHDDEAIEKMLNDLSLIKKFE
Subjt:  KGRVHDDEAIEKMLNDLSLIKKFE

TYK00568.1 DNA-directed RNA polymerase II subunit 4-like [Cucumis melo var. makuwa]

2.5e-59

92.54

Show/hide

Query:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQISQVFEKSLQYVKRFSRYKNPDAVRQ----------LCVLGNLCPETVEE
        MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQISQVFEKSLQYVKRFSRYKNPDAVRQ          LCVLGNLCPETVEE
Subjt:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQISQVFEKSLQYVKRFSRYKNPDAVRQ----------LCVLGNLCPETVEE

Query:  ATSIVPSLKTKGRVHDDEAIEKMLNDLSLIKKFE
        ATSIVPSLKTKGRVHDDEAIEKMLNDLSLIKKFE
Subjt:  ATSIVPSLKTKGRVHDDEAIEKMLNDLSLIKKFE

XP_004141497.1 DNA-directed RNA polymerase II subunit 4 [Cucumis sativus]

2.8e-58

88.41

Show/hide

Query:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQISQVFEKSLQYVKRFSRYKNPDAVRQ--------------LCVLGNLCPE
        MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQ+SQVFEKSLQYVKRFSRYKNPDAVRQ              LCVLGNLCPE
Subjt:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQISQVFEKSLQYVKRFSRYKNPDAVRQ--------------LCVLGNLCPE

Query:  TVEEATSIVPSLKTKGRVHDDEAIEKMLNDLSLIKKFE
        TVEEATSIVPSLKTKGRVH+DEAIEKMLNDLSLIKKFE
Subjt:  TVEEATSIVPSLKTKGRVHDDEAIEKMLNDLSLIKKFE

XP_008459458.1 PREDICTED: DNA-directed RNA polymerase II subunit 4-like [Cucumis melo]

7.2e-59

89.86

Show/hide

Query:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQISQVFEKSLQYVKRFSRYKNPDAVRQ--------------LCVLGNLCPE
        MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQISQVFEKSLQYVKRFSRYKNPDAVRQ              LCVLGNLCPE
Subjt:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQISQVFEKSLQYVKRFSRYKNPDAVRQ--------------LCVLGNLCPE

Query:  TVEEATSIVPSLKTKGRVHDDEAIEKMLNDLSLIKKFE
        TVEEATSIVPSLKTKGRVHDDEAIEKMLNDLSLIKKFE
Subjt:  TVEEATSIVPSLKTKGRVHDDEAIEKMLNDLSLIKKFE

XP_038890773.1 DNA-directed RNA polymerase II subunit 4-like [Benincasa hispida]

6.1e-58

87.68

Show/hide

Query:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQISQVFEKSLQYVKRFSRYKNPDAVRQ--------------LCVLGNLCPE
        MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQ+SQVFEKSLQYVKRFSRYKNPDAVRQ              LCVLGNLCPE
Subjt:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQISQVFEKSLQYVKRFSRYKNPDAVRQ--------------LCVLGNLCPE

Query:  TVEEATSIVPSLKTKGRVHDDEAIEKMLNDLSLIKKFE
        TVEEA S+VPSLKTKGRVHDDEAIEKMLNDLSLIKKFE
Subjt:  TVEEATSIVPSLKTKGRVHDDEAIEKMLNDLSLIKKFE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KXP7 RPOL4c domain-containing protein

3.0e-58

95.97

Show/hide

Query:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQISQVFEKSLQYVKRFSRYKNPDAVRQLCVLGNLCPETVEEATSIVPSLKT
        MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQ+SQVFEKSLQYVKRFSRYKNPDA   LCVLGNLCPETVEEATSIVPSLKT
Subjt:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQISQVFEKSLQYVKRFSRYKNPDAVRQLCVLGNLCPETVEEATSIVPSLKT

Query:  KGRVHDDEAIEKMLNDLSLIKKFE
        KGRVH+DEAIEKMLNDLSLIKKFE
Subjt:  KGRVHDDEAIEKMLNDLSLIKKFE

A0A1S3CA78 DNA-directed RNA polymerase II subunit 4-like

3.5e-59

89.86

Show/hide

Query:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQISQVFEKSLQYVKRFSRYKNPDAVRQ--------------LCVLGNLCPE
        MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQISQVFEKSLQYVKRFSRYKNPDAVRQ              LCVLGNLCPE
Subjt:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQISQVFEKSLQYVKRFSRYKNPDAVRQ--------------LCVLGNLCPE

Query:  TVEEATSIVPSLKTKGRVHDDEAIEKMLNDLSLIKKFE
        TVEEATSIVPSLKTKGRVHDDEAIEKMLNDLSLIKKFE
Subjt:  TVEEATSIVPSLKTKGRVHDDEAIEKMLNDLSLIKKFE

A0A5A7T811 DNA-directed RNA polymerase II subunit 4-like

3.5e-59

89.86

Show/hide

Query:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQISQVFEKSLQYVKRFSRYKNPDAVRQ--------------LCVLGNLCPE
        MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQISQVFEKSLQYVKRFSRYKNPDAVRQ              LCVLGNLCPE
Subjt:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQISQVFEKSLQYVKRFSRYKNPDAVRQ--------------LCVLGNLCPE

Query:  TVEEATSIVPSLKTKGRVHDDEAIEKMLNDLSLIKKFE
        TVEEATSIVPSLKTKGRVHDDEAIEKMLNDLSLIKKFE
Subjt:  TVEEATSIVPSLKTKGRVHDDEAIEKMLNDLSLIKKFE

A0A5D3BN95 DNA-directed RNA polymerase II subunit 4-like

1.2e-59

92.54

Show/hide

Query:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQISQVFEKSLQYVKRFSRYKNPDAVRQ----------LCVLGNLCPETVEE
        MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQISQVFEKSLQYVKRFSRYKNPDAVRQ          LCVLGNLCPETVEE
Subjt:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQISQVFEKSLQYVKRFSRYKNPDAVRQ----------LCVLGNLCPETVEE

Query:  ATSIVPSLKTKGRVHDDEAIEKMLNDLSLIKKFE
        ATSIVPSLKTKGRVHDDEAIEKMLNDLSLIKKFE
Subjt:  ATSIVPSLKTKGRVHDDEAIEKMLNDLSLIKKFE

A0A6J1JVN3 DNA-directed RNA polymerase II subunit 4-like

1.6e-56

85.51

Show/hide

Query:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQISQVFEKSLQYVKRFSRYKNPDAVRQ--------------LCVLGNLCPE
        MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQ +EDPTNQ+SQVFEKSLQYVKRFSRYKNPDAVRQ              LCVLGNLCPE
Subjt:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQISQVFEKSLQYVKRFSRYKNPDAVRQ--------------LCVLGNLCPE

Query:  TVEEATSIVPSLKTKGRVHDDEAIEKMLNDLSLIKKFE
        TVEEA S+VPSLKTKGR HDDEAIEKMLNDLSLIKKFE
Subjt:  TVEEATSIVPSLKTKGRVHDDEAIEKMLNDLSLIKKFE

SwissProt top hits

e value

%identity

Alignment

O15514 DNA-directed RNA polymerase II subunit RPB4

3.5e-16

37.23

Show/hide

Query:  SGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQISQVFEKSLQYVKRFSRYKNPDAVR--------------QLCVLGNLCPET
        +G+ EE+A++L    EF  A+ L+N EV ++LEH+ +Q  + AED   ++S+VF K+L Y  RFSR+KN + +               +L  L NLCPET
Subjt:  SGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQISQVFEKSLQYVKRFSRYKNPDAVR--------------QLCVLGNLCPET

Query:  VEEATSIVPSLKTKGRVHDDEAIEKMLNDLSLIKKFE
         EE+ +++PSL  +GR  D+E ++++L+D+   + F+
Subjt:  VEEATSIVPSLKTKGRVHDDEAIEKMLNDLSLIKKFE

O48890 DNA-directed RNA polymerase II subunit 4

5.4e-57

81.88

Show/hide

Query:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQISQVFEKSLQYVKRFSRYKNPDAVRQ--------------LCVLGNLCPE
        MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHK+EQLQQ +EDP NQ+SQVFEKSLQYVKRFSRYKNPDAVRQ              LCVLGNLCPE
Subjt:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQISQVFEKSLQYVKRFSRYKNPDAVRQ--------------LCVLGNLCPE

Query:  TVEEATSIVPSLKTKGRVHDDEAIEKMLNDLSLIKKFE
        TVEEA ++VPSLKTKGR HDDEAIEKMLNDLSL+K+FE
Subjt:  TVEEATSIVPSLKTKGRVHDDEAIEKMLNDLSLIKKFE

Q54S04 DNA-directed RNA polymerase II subunit rpb4

1.1e-12

32.65

Show/hide

Query:  EEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAED-------------PTNQISQVFEKSLQYVKRFSRYKNPDAVRQ--------------
        +EEE+   LK   +   AK L+N EV+++LEH+    +    +               N I + F K+L Y ++FSRYKN  +++Q              
Subjt:  EEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAED-------------PTNQISQVFEKSLQYVKRFSRYKNPDAVRQ--------------

Query:  LCVLGNLCPETVEEATSIVPSLKTKGRVHDDEAIEKMLNDLSLIKKF
        +  L NLCPE  +EA S++PSLK   ++ DDE ++ +L++LS ++KF
Subjt:  LCVLGNLCPETVEEATSIVPSLKTKGRVHDDEAIEKMLNDLSLIKKF

Q9D7M8 DNA-directed RNA polymerase II subunit RPB4

3.5e-16

37.23

Show/hide

Query:  SGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQISQVFEKSLQYVKRFSRYKNPDAVR--------------QLCVLGNLCPET
        +G+ EE+A++L    EF  A+ L+N EV ++LEH+ +Q  + AED   ++S+VF K+L Y  RFSR+KN + +               +L  L NLCPET
Subjt:  SGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQISQVFEKSLQYVKRFSRYKNPDAVR--------------QLCVLGNLCPET

Query:  VEEATSIVPSLKTKGRVHDDEAIEKMLNDLSLIKKFE
         EE+ +++PSL  +GR  D+E ++++L+D+   + F+
Subjt:  VEEATSIVPSLKTKGRVHDDEAIEKMLNDLSLIKKFE

Q9VEA5 DNA-directed RNA polymerase II subunit Rpb4

9.0e-12

33.33

Show/hide

Query:  EENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQISQVFEKSLQYVKRFSRYKNPDAVR--------------QLCVLGNLCPETVEEA
        +E+AA+L+   EF  A+ L+  EV ++L+H+  + Q  + D   + S+VF K+  Y   F ++KN + +               +L  LGNLCPE  EEA
Subjt:  EENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQISQVFEKSLQYVKRFSRYKNPDAVR--------------QLCVLGNLCPETVEEA

Query:  TSIVPSLKTKGRVHDDEAIEKMLNDL
         +++PSL  +GR  D+E + ++L+D+
Subjt:  TSIVPSLKTKGRVHDDEAIEKMLNDL

Arabidopsis top hits

e value

%identity

Alignment

AT4G15950.1 RNA polymerase II, Rpb4, core protein

9.2e-12

33.9

Show/hide

Query:  AKCLMNCEVSLILEHKYEQLQQRAEDPTNQISQVFEKSLQYVKRFSRYKNPDAVR--------------QLCVLGNLCPETVEEATSIVPSLKTKGRVHD
        A+C+M+CE   IL+    QL   +EDP+ +I   ++++L YV+    Y NP +VR              ++CV+ N   E+V+E  + +PSLKTK  V  
Subjt:  AKCLMNCEVSLILEHKYEQLQQRAEDPTNQISQVFEKSLQYVKRFSRYKNPDAVR--------------QLCVLGNLCPETVEEATSIVPSLKTKGRVHD

Query:  DEAIEKMLNDLSLIKKFE
        ++ ++  L +LS +KK E
Subjt:  DEAIEKMLNDLSLIKKFE

AT5G09920.1 RNA polymerase II, Rpb4, core protein

3.8e-58

81.88

Show/hide

Query:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQISQVFEKSLQYVKRFSRYKNPDAVRQ--------------LCVLGNLCPE
        MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHK+EQLQQ +EDP NQ+SQVFEKSLQYVKRFSRYKNPDAVRQ              LCVLGNLCPE
Subjt:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQISQVFEKSLQYVKRFSRYKNPDAVRQ--------------LCVLGNLCPE

Query:  TVEEATSIVPSLKTKGRVHDDEAIEKMLNDLSLIKKFE
        TVEEA ++VPSLKTKGR HDDEAIEKMLNDLSL+K+FE
Subjt:  TVEEATSIVPSLKTKGRVHDDEAIEKMLNDLSLIKKFE

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTCTGGAGAAGAGGAAGAAAATGCTGCAGAGCTTAAAATTGGGGATGAGTTCTTAAAAGCTAAGTGTTTAATGAATTGTGAGGTTTCTTTGATCCTGGAACAC
AAGTATGAGCAGCTTCAACAAAGGGCCGAAGATCCAACAAATCAAATTTCTCAAGTGTTCGAGAAGTCACTGCAGTATGTGAAACGCTTCAGTCGCTACAAGAAC
CCTGATGCTGTTAGACAATTATGTGTTCTTGGCAACCTTTGCCCTGAAACTGTGGAGGAAGCTACTTCCATAGTTCCATCTTTGAAGACTAAAGGAAGAGTGCAT
GACGACGAAGCAATAGAGAAGATGTTGAATGATCTTTCATTAATCAAAAAGTTTGAGTAG

mRNA sequence

Show/hide mRNA sequence

CCGCCGAAGAACGTGCAAATATTATGATCACCGTTATTGCCCTTTGTCCGAGTTGAAAACGAAGAAGCTGCCTCTGATTTTGCAGTTCGCCAGATCTCTGCATTT
TGTGCTGCGTTCTCTCCTCTCTCGTGTAGGTTGGACAAATCTTTAATTTGAAGCATGTCTGGAGAAGAGGAAGAAAATGCTGCAGAGCTTAAAATTGGGGATGAG
TTCTTAAAAGCTAAGTGTTTAATGAATTGTGAGGTTTCTTTGATCCTGGAACACAAGTATGAGCAGCTTCAACAAAGGGCCGAAGATCCAACAAATCAAATTTCT
CAAGTGTTCGAGAAGTCACTGCAGTATGTGAAACGCTTCAGTCGCTACAAGAACCCTGATGCTGTTAGACAATTATGTGTTCTTGGCAACCTTTGCCCTGAAACT
GTGGAGGAAGCTACTTCCATAGTTCCATCTTTGAAGACTAAAGGAAGAGTGCATGACGACGAAGCAATAGAGAAGATGTTGAATGATCTTTCATTAATCAAAAAG
TTTGAGTAGTTAATTAACTTTCTAAATCTTTACTAAATGTGTTTTTATCCATTATTTATGACATTTTCTCAACCAAAAACAAACACCAAATTTTACCCTTCTGAT
CATGGTTTTATAATTGTTTTGGATTACTTTATAAATTATATTCTATTACCAAATCTCCAAGTATTGGTCAAGGTTAAATTAGTCCTTAAAATTATAGAACTATAT
CCAACTTGTTTGGCTCATTTTCAAATATAAAACCAAAATATTTACGATATATAGCAAAATTACCAGAGAGTATTGGAATATTTTTTAAACATTTCTCTTTTAGAA
ATAAACAATCGAAAGAAATTTATGTTAACCTTTACAAGTTTATCATGAATCTATAATGGTACTAACAAAACAATAGAGCAAATATAAATTTTAGGAAAAATTAAA
ATTTATATTTCTGACTTTGAAATTTGTATAAATTTAAACTTTGAATTTTGGACGTTGCATCAATTTTAACCTCAAATTAATAACTGTATCGATTTAGATCCTAAA
CTTTTA

Protein sequence

Show/hide protein sequence

MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQISQVFEKSLQYVKRFSRYKNPDAVRQLCVLGNLCPETVEEATSIVPSLKTKGRVH
DDEAIEKMLNDLSLIKKFE

MELO3C022087 (gene) of Melon (DHL92) v4 genome