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MELO3C022182 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C022182
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein, putative, Ty3-gypsy subclass
Genome locationchr09:428699..428971
RNA-Seq ExpressionMELO3C022182
SyntenyMELO3C022182
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038928.1 retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]1.6e-0755.56Show/hide
Query:  LQEVRRFSMHKNVDGSGKDVGKSISDIEGNVEKTVGRNALGDLFPTRHQQSIGNNLLSTFSSP
        LQEV R  MHK VD SGKDVG  I D E +V  T+ RN   D FPT HQQ + N  L T S P
Subjt:  LQEVRRFSMHKNVDGSGKDVGKSISDIEGNVEKTVGRNALGDLFPTRHQQSIGNNLLSTFSSP

KAA0039107.1 hypothetical protein E6C27_scaffold84G002100 [Cucumis melo var. makuwa]1.1e-0862.26Show/hide
Query:  MHKNVDGSGKDVGKSISDIEGNVEKTVGRNALGDLFPTRHQQSIGNNLLSTFS
        MHKNV  SGKD+GK I ++E  + K VGRN LG+ FP  HQQ IGNNLL T S
Subjt:  MHKNVDGSGKDVGKSISDIEGNVEKTVGRNALGDLFPTRHQQSIGNNLLSTFS

TrEMBL top hitse value%identityAlignment
A0A5A7T7S7 Retrotransposon protein, putative, Ty3-gypsy subclass7.8e-0855.56Show/hide
Query:  LQEVRRFSMHKNVDGSGKDVGKSISDIEGNVEKTVGRNALGDLFPTRHQQSIGNNLLSTFSSP
        LQEV R  MHK VD SGKDVG  I D E +V  T+ RN   D FPT HQQ + N  L T S P
Subjt:  LQEVRRFSMHKNVDGSGKDVGKSISDIEGNVEKTVGRNALGDLFPTRHQQSIGNNLLSTFSSP

A0A5A7TBZ3 Uncharacterized protein5.4e-0962.26Show/hide
Query:  MHKNVDGSGKDVGKSISDIEGNVEKTVGRNALGDLFPTRHQQSIGNNLLSTFS
        MHKNV  SGKD+GK I ++E  + K VGRN LG+ FP  HQQ IGNNLL T S
Subjt:  MHKNVDGSGKDVGKSISDIEGNVEKTVGRNALGDLFPTRHQQSIGNNLLSTFS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGCAGAAAATCGATATTCCTATCAATACATCATGTTGTTTCTGTATCTATATATGTGTTTCTCTATTTCCACTACAAGAAGTGAGGAGATTCTCGATGCAC
AAAAACGTCGATGGAAGTGGAAAAGACGTCGGGAAATCAATTTCCGACATAGAAGGGAACGTCGAAAAGACCGTCGGAAGAAACGCATTGGGAGACCTTTTCCCG
ACGCGTCACCAACAAAGCATTGGGAATAACCTTCTCTCGACGTTTTCTTCACCAACAAAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGGCAGAAAATCGATATTCCTATCAATACATCATGTTGTTTCTGTATCTATATATGTGTTTCTCTATTTCCACTACAAGAAGTGAGGAGATTCTCGATGCAC
AAAAACGTCGATGGAAGTGGAAAAGACGTCGGGAAATCAATTTCCGACATAGAAGGGAACGTCGAAAAGACCGTCGGAAGAAACGCATTGGGAGACCTTTTCCCG
ACGCGTCACCAACAAAGCATTGGGAATAACCTTCTCTCGACGTTTTCTTCACCAACAAAGTAA
Protein sequenceShow/hide protein sequence
MRQKIDIPINTSCCFCIYICVSLFPLQEVRRFSMHKNVDGSGKDVGKSISDIEGNVEKTVGRNALGDLFPTRHQQSIGNNLLSTFSSPTK