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MELO3C022441 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C022441
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
Description60S ribosomal protein L38
Genome locationchr11:31244868..31250862
RNA-Seq ExpressionMELO3C022441
SyntenyMELO3C022441
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022618 - ribonucleoprotein complex assembly (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR002675 - Ribosomal protein L38e
IPR038464 - Ribosomal protein L38e superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8646721.1 hypothetical protein Csa_005163 [Cucumis sativus]1.1e-3664Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFK------------------------------------------------PKQIHEIKDFLLTARRKD
        PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFK                                                PKQIHEIKDFLLTARRKD
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFK------------------------------------------------PKQIHEIKDFLLTARRKD

Query:  ARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        ARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPP    ++L
Subjt:  ARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

KAE8658400.1 60S ribosomal protein L38 [Hibiscus syriacus]7.5e-3570.08Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKPKQIHEIKDFLLTARR-------------------------------KDARSVKIKRSKDVVKFKV
        PKQIHEIKDFLLTARRKDARSVKIK+S+DVVKFKPKQIHEIKDFLLTARR                               KDARSVKIK+S+DVVKFKV
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKPKQIHEIKDFLLTARR-------------------------------KDARSVKIKRSKDVVKFKV

Query:  RCSKYLYTLCVFDSEKADKLKQSLPPG
        RCSKYLYTL V D EKADKLKQSLPPG
Subjt:  RCSKYLYTLCVFDSEKADKLKQSLPPG

KAF3497693.1 hypothetical protein DY000_02056630 [Brassica cretica]1.1e-3664.58Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFK-----------------------------------------------PKQIHEIKDFLLTARRKDA
        PKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFK                                               PKQIHEIKDFLLTARRKDA
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFK-----------------------------------------------PKQIHEIKDFLLTARRKDA

Query:  RSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGL
        RSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLPPGL
Subjt:  RSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGL

KAG6515258.1 hypothetical protein ZIOFF_025650 [Zingiber officinale]3.0e-3151.1Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFK------------------------------------------------------------------
        PKQIHEIKDFLLTARRKDARSVKIKR KDVVKFK                                                                  
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFK------------------------------------------------------------------

Query:  --------------------PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
                            PKQIHEIKDFLLTARRKDARSVKIKR KDVVKFKVRCSKYLYTLCVFDSEKA+KLKQSLPPG
Subjt:  --------------------PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

KVH95117.1 Ribosomal protein L38e, partial [Cynara cardunculus var. scolymus]1.1e-3664.83Show/hide
Query:  RPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFK-----------------------------------------------PKQIHEIKDFLLTARRKD
        +PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFK                                               PKQIHEIKDFLLTARRKD
Subjt:  RPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFK-----------------------------------------------PKQIHEIKDFLLTARRKD

Query:  ARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGL
        ARSVKIKRSKDVVKFKVRCSKYLYTLCVFD+EKA+KLKQSLPPG+
Subjt:  ARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGL

TrEMBL top hitse value%identityAlignment
A0A0D9X019 Uncharacterized protein1.3e-3766.67Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFK---------------------------------PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKF
        PKQIHEIKDFLLTARRKDARSV+IKR+KD VKFK                                 PKQIHEIKDFLLTARRKDARSV+IKR+KD VKF
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFK---------------------------------PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKF

Query:  KVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        KVRCSKYLYTLCVFD++KA+KLKQSLPPGL+VQ++
Subjt:  KVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

A0A103XQP8 Ribosomal protein L38e (Fragment)5.1e-3764.83Show/hide
Query:  RPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFK-----------------------------------------------PKQIHEIKDFLLTARRKD
        +PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFK                                               PKQIHEIKDFLLTARRKD
Subjt:  RPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFK-----------------------------------------------PKQIHEIKDFLLTARRKD

Query:  ARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGL
        ARSVKIKRSKDVVKFKVRCSKYLYTLCVFD+EKA+KLKQSLPPG+
Subjt:  ARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGL

A0A5C7GVP2 Uncharacterized protein5.1e-2993.15Show/hide
Query:  VVKFKPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        + +F+PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFD+EKADKLKQSLPPGLSVQDL
Subjt:  VVKFKPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

A0A6A2WU09 60S ribosomal protein L383.6e-3570.08Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKPKQIHEIKDFLLTARR-------------------------------KDARSVKIKRSKDVVKFKV
        PKQIHEIKDFLLTARRKDARSVKIK+S+DVVKFKPKQIHEIKDFLLTARR                               KDARSVKIK+S+DVVKFKV
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKPKQIHEIKDFLLTARR-------------------------------KDARSVKIKRSKDVVKFKV

Query:  RCSKYLYTLCVFDSEKADKLKQSLPPG
        RCSKYLYTL V D EKADKLKQSLPPG
Subjt:  RCSKYLYTLCVFDSEKADKLKQSLPPG

D7SPL7 Uncharacterized protein3.9e-2972.82Show/hide
Query:  RPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSV
        +P Q++ +  FL  +  + A S    R+  +    PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSV
Subjt:  RPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSV

Query:  QDL
        QDL
Subjt:  QDL

SwissProt top hitse value%identityAlignment
O22860 60S ribosomal protein L383.4e-3095.59Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        PKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLPPGLSVQDL
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

P46291 60S ribosomal protein L384.2e-2891.18Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        PKQIHEIKDFLLTARRKDAR+VKIK++KD+VKFKVRCSKYLYTLCV D EKADKLKQSLPPGLSVQDL
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

Q32PB9 60S ribosomal protein L389.0e-2376.47Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        P++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSLPPGL+V++L
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

Q95V84 60S ribosomal protein L385.6e-2582.35Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        PKQIHEIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKADKLKQSLPPGL+V++L
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

Q9JJI8 60S ribosomal protein L383.1e-2377.94Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        P++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSLPPGL+V+DL
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

Arabidopsis top hitse value%identityAlignment
AT2G43460.1 Ribosomal L38e protein family2.4e-3195.59Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        PKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLPPGLSVQDL
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

AT3G59540.1 Ribosomal L38e protein family2.4e-3195.59Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        PKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLPPGLSVQDL
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAAGGGATGATTACTCGAGATGGGTAAATGGGCCTTCTCGGATTGGGCCTATCTTAATTGACGGCCCATATAGGCCGAAACAAATTCATGAGATCAAAGATTTCCT
TCTCACTGCTAGAAGGAAGGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAAGATGTGGTGAAGTTCAAACCGAAACAAATTCATGAGATCAAAGATTTCCTTCTCACTG
CTAGAAGGAAGGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAAGATGTGGTGAAGTTCAAAGTACGATGCTCCAAATATCTTTATACTCTTTGTGTTTTCGACTCGGAG
AAGGCAGACAAGTTGAAGCAATCCCTTCCACCAGGTTTGAGTGTACAAGATCTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCAAGGGATGATTACTCGAGATGGGTAAATGGGCCTTCTCGGATTGGGCCTATCTTAATTGACGGCCCATATAGGCCGAAACAAATTCATGAGATCAAAGATTTCCT
TCTCACTGCTAGAAGGAAGGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAAGATGTGGTGAAGTTCAAACCGAAACAAATTCATGAGATCAAAGATTTCCTTCTCACTG
CTAGAAGGAAGGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAAGATGTGGTGAAGTTCAAAGTACGATGCTCCAAATATCTTTATACTCTTTGTGTTTTCGACTCGGAG
AAGGCAGACAAGTTGAAGCAATCCCTTCCACCAGGTTTGAGTGTACAAGATCTGTGAAAGAATGGTTCAAGTTTTCTCGTGATCACGTGGACGATGACTAGATTTTTTAT
GGTTTTTTCTCCAACTATTTAGCATATGTTTAAATTACATTTTTGAGCCTTGTAGTAATCCATATACTGTCTTCATTTTCGGGTAGATTGGATGTCCGAGTTTTTCATCT
ATGCATTTGGTGTTTCACCAAATTTATCCACTGTCAAAAGGAAAATTTCTTCATGCACCCTTTTATTCCTCTTTTAGATTTTTAAACAAAATTTCTTTTAGTCCAATGGT
GGGGAGATTTAAACGTTCAATCGTTTGGTTGAGTGCACTCATTTTGTAAGAGAAAGAGTGATCTTAATGATATGAAAGTGGTAAAGGAATGGATAATTACCATTTTACAT
GGTGTGCAACTCTTCTTTTGGTAGTTCAATAATAAGAACTCCAAATGTCTGAGTGTATTTGGCTTCAAGCAATCCATGTTTAGTCACTTTTTCAAGTGTTTTTTTTTTTT
TTTCCTTGAAA
Protein sequenceShow/hide protein sequence
MSRDDYSRWVNGPSRIGPILIDGPYRPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSE
KADKLKQSLPPGLSVQDL