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MELO3C022597 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C022597
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr10:15834300..15834731
RNA-Seq ExpressionMELO3C022597
SyntenyMELO3C022597
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035974.1 hypothetical protein E6C27_scaffold56G001830 [Cucumis melo var. makuwa]5.0e-72100Show/hide
Query:  MALIDSETKRCRRFVDGLRGKIRTPVVPTVVRNDYAQLVDATLRVEKSMGVKSASSGISGEEEKGSIENKKIKTIVSQESCWSSDKKQRCSECGKRHSGT
        MALIDSETKRCRRFVDGLRGKIRTPVVPTVVRNDYAQLVDATLRVEKSMGVKSASSGISGEEEKGSIENKKIKTIVSQESCWSSDKKQRCSECGKRHSGT
Subjt:  MALIDSETKRCRRFVDGLRGKIRTPVVPTVVRNDYAQLVDATLRVEKSMGVKSASSGISGEEEKGSIENKKIKTIVSQESCWSSDKKQRCSECGKRHSGT

Query:  CRRRSITCFQCHKKKHYKSEFQSKFKEDEERSTQIGVASHSVQ
        CRRRSITCFQCHKKKHYKSEFQSKFKEDEERSTQIGVASHSVQ
Subjt:  CRRRSITCFQCHKKKHYKSEFQSKFKEDEERSTQIGVASHSVQ

KAA0056429.1 hypothetical protein E6C27_scaffold186G001860 [Cucumis melo var. makuwa]3.6e-1756.99Show/hide
Query:  DATLRVEKSMGVKSASSGISGEEEKGSIEN-KKIKTIVSQESCWSSDKKQRCSECGKRHSGTCRRRSITCFQCHKKKHYKSEFQSKFKEDEER
        +A L+VEKS+ +K  SS +S EEE+ +I N KK KT++SQ S W  D+KQ+C++ G+RH+  CRR+SITC Q  +K HYKSE+QSKF EDEER
Subjt:  DATLRVEKSMGVKSASSGISGEEEKGSIEN-KKIKTIVSQESCWSSDKKQRCSECGKRHSGTCRRRSITCFQCHKKKHYKSEFQSKFKEDEER

KAA0062421.1 hypothetical protein E6C27_scaffold154G002300 [Cucumis melo var. makuwa]7.6e-2863.3Show/hide
Query:  MALIDSETKRCRRFVDGLRGKIRTPVVPTVVRNDYAQLVDATLRVEKSMGVKSASSGISGEEEKGSIENKKIKTIVSQESCWSSDKKQRCSECGKRHSGT
        M LID E +RCR+FV GLRGKIRT VVP V+R+DYA LVD  L VEKS+G+K  S  +S EEE GS+E KK KTIVSQ S W+SD+K +C +CG+ H G 
Subjt:  MALIDSETKRCRRFVDGLRGKIRTPVVPTVVRNDYAQLVDATLRVEKSMGVKSASSGISGEEEKGSIENKKIKTIVSQESCWSSDKKQRCSECGKRHSGT

Query:  CRRRSITCF
        CRRRSI C+
Subjt:  CRRRSITCF

TYK18871.1 hypothetical protein E5676_scaffold204G00730 [Cucumis melo var. makuwa]1.7e-1166.13Show/hide
Query:  MALIDSETKRCRRFVDGLRGKIRTPVVPTVVRNDYAQLVDATLRVEKSMGVKSASSGISGEE
        M LI SETKRCR F++GLRG+IRTPVVP  VR+ Y QLV A LRVEKS+GV+  SS +  EE
Subjt:  MALIDSETKRCRRFVDGLRGKIRTPVVPTVVRNDYAQLVDATLRVEKSMGVKSASSGISGEE

TYK26473.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.4e-0832.06Show/hide
Query:  LIDSETKRCRRFVDGLRGKIRTPVVPTVVRNDYAQLVDATLRVEKSMGVK----------SASSGISGEEEK---GSIENKKIKTIVSQESCWSSDKKQR
        ++ SE+ RCRRF  GL  +IRTPV       +++QLV+  LRVE+++  +          S +SG  G E +     I    +++   Q+S  S+ ++ R
Subjt:  LIDSETKRCRRFVDGLRGKIRTPVVPTVVRNDYAQLVDATLRVEKSMGVK----------SASSGISGEEEK---GSIENKKIKTIVSQESCWSSDKKQR

Query:  CSECGKRHSGTCRRRSITCFQCHKKKHYKSE
        C+ CG+ H G C   +  C+QC + +H+K +
Subjt:  CSECGKRHSGTCRRRSITCFQCHKKKHYKSE

TrEMBL top hitse value%identityAlignment
A0A5D3D5N9 Uncharacterized protein8.3e-1266.13Show/hide
Query:  MALIDSETKRCRRFVDGLRGKIRTPVVPTVVRNDYAQLVDATLRVEKSMGVKSASSGISGEE
        M LI SETKRCR F++GLRG+IRTPVVP  VR+ Y QLV A LRVEKS+GV+  SS +  EE
Subjt:  MALIDSETKRCRRFVDGLRGKIRTPVVPTVVRNDYAQLVDATLRVEKSMGVKSASSGISGEE

A0A5D3DS44 Uncharacterized protein3.7e-2863.3Show/hide
Query:  MALIDSETKRCRRFVDGLRGKIRTPVVPTVVRNDYAQLVDATLRVEKSMGVKSASSGISGEEEKGSIENKKIKTIVSQESCWSSDKKQRCSECGKRHSGT
        M LID E +RCR+FV GLRGKIRT VVP V+R+DYA LVD  L VEKS+G+K  S  +S EEE GS+E KK KTIVSQ S W+SD+K +C +CG+ H G 
Subjt:  MALIDSETKRCRRFVDGLRGKIRTPVVPTVVRNDYAQLVDATLRVEKSMGVKSASSGISGEEEKGSIENKKIKTIVSQESCWSSDKKQRCSECGKRHSGT

Query:  CRRRSITCF
        CRRRSI C+
Subjt:  CRRRSITCF

A0A5D3DSB4 DNA/RNA polymerases superfamily protein6.5e-0932.06Show/hide
Query:  LIDSETKRCRRFVDGLRGKIRTPVVPTVVRNDYAQLVDATLRVEKSMGVK----------SASSGISGEEEK---GSIENKKIKTIVSQESCWSSDKKQR
        ++ SE+ RCRRF  GL  +IRTPV       +++QLV+  LRVE+++  +          S +SG  G E +     I    +++   Q+S  S+ ++ R
Subjt:  LIDSETKRCRRFVDGLRGKIRTPVVPTVVRNDYAQLVDATLRVEKSMGVK----------SASSGISGEEEK---GSIENKKIKTIVSQESCWSSDKKQR

Query:  CSECGKRHSGTCRRRSITCFQCHKKKHYKSE
        C+ CG+ H G C   +  C+QC + +H+K +
Subjt:  CSECGKRHSGTCRRRSITCFQCHKKKHYKSE

A0A5D3DZA3 Uncharacterized protein1.7e-1756.99Show/hide
Query:  DATLRVEKSMGVKSASSGISGEEEKGSIEN-KKIKTIVSQESCWSSDKKQRCSECGKRHSGTCRRRSITCFQCHKKKHYKSEFQSKFKEDEER
        +A L+VEKS+ +K  SS +S EEE+ +I N KK KT++SQ S W  D+KQ+C++ G+RH+  CRR+SITC Q  +K HYKSE+QSKF EDEER
Subjt:  DATLRVEKSMGVKSASSGISGEEEKGSIEN-KKIKTIVSQESCWSSDKKQRCSECGKRHSGTCRRRSITCFQCHKKKHYKSEFQSKFKEDEER

A0A5D3E3Q3 Retrotrans_gag domain-containing protein2.4e-72100Show/hide
Query:  MALIDSETKRCRRFVDGLRGKIRTPVVPTVVRNDYAQLVDATLRVEKSMGVKSASSGISGEEEKGSIENKKIKTIVSQESCWSSDKKQRCSECGKRHSGT
        MALIDSETKRCRRFVDGLRGKIRTPVVPTVVRNDYAQLVDATLRVEKSMGVKSASSGISGEEEKGSIENKKIKTIVSQESCWSSDKKQRCSECGKRHSGT
Subjt:  MALIDSETKRCRRFVDGLRGKIRTPVVPTVVRNDYAQLVDATLRVEKSMGVKSASSGISGEEEKGSIENKKIKTIVSQESCWSSDKKQRCSECGKRHSGT

Query:  CRRRSITCFQCHKKKHYKSEFQSKFKEDEERSTQIGVASHSVQ
        CRRRSITCFQCHKKKHYKSEFQSKFKEDEERSTQIGVASHSVQ
Subjt:  CRRRSITCFQCHKKKHYKSEFQSKFKEDEERSTQIGVASHSVQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCACTAATCGACTCAGAGACTAAACGATGTAGGCGATTTGTGGACGGATTAAGAGGCAAAATCAGAACTCCAGTTGTACCCACTGTAGTAAGAAATGACTAT
GCGCAATTAGTAGATGCAACCCTACGAGTAGAAAAGAGTATGGGTGTAAAAAGCGCAAGTTCTGGAATAAGCGGAGAAGAAGAAAAAGGAAGTATAGAGAATAAG
AAGATTAAGACTATAGTCAGCCAAGAGTCGTGTTGGAGTAGCGATAAAAAACAAAGGTGTAGTGAGTGTGGCAAGAGGCATTCAGGAACTTGTAGGAGAAGGAGT
ATCACATGTTTCCAATGTCACAAGAAAAAGCATTATAAGAGTGAATTCCAAAGTAAGTTTAAAGAAGACGAAGAAAGATCAACTCAAATAGGGGTGGCATCTCAC
TCAGTTCAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCACTAATCGACTCAGAGACTAAACGATGTAGGCGATTTGTGGACGGATTAAGAGGCAAAATCAGAACTCCAGTTGTACCCACTGTAGTAAGAAATGACTAT
GCGCAATTAGTAGATGCAACCCTACGAGTAGAAAAGAGTATGGGTGTAAAAAGCGCAAGTTCTGGAATAAGCGGAGAAGAAGAAAAAGGAAGTATAGAGAATAAG
AAGATTAAGACTATAGTCAGCCAAGAGTCGTGTTGGAGTAGCGATAAAAAACAAAGGTGTAGTGAGTGTGGCAAGAGGCATTCAGGAACTTGTAGGAGAAGGAGT
ATCACATGTTTCCAATGTCACAAGAAAAAGCATTATAAGAGTGAATTCCAAAGTAAGTTTAAAGAAGACGAAGAAAGATCAACTCAAATAGGGGTGGCATCTCAC
TCAGTTCAATAG
Protein sequenceShow/hide protein sequence
MALIDSETKRCRRFVDGLRGKIRTPVVPTVVRNDYAQLVDATLRVEKSMGVKSASSGISGEEEKGSIENKKIKTIVSQESCWSSDKKQRCSECGKRHSGTCRRRS
ITCFQCHKKKHYKSEFQSKFKEDEERSTQIGVASHSVQ