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MELO3C024009 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C024009
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
Descriptionstructure-specific endonuclease subunit slx1
Genome locationchr04:23312059..23315554
RNA-Seq ExpressionMELO3C024009
SyntenyMELO3C024009
Gene Ontology termsGO:0000724 - double-strand break repair via homologous recombination (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0033557 - Slx1-Slx4 complex (cellular component)
GO:0008821 - crossover junction endodeoxyribonuclease activity (molecular function)
GO:0017108 - 5'-flap endonuclease activity (molecular function)
InterPro domainsIPR000305 - GIY-YIG endonuclease
IPR035901 - GIY-YIG endonuclease superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7018060.1 slx1, partial [Cucurbita argyrosperma subsp. argyrosperma]1.2e-6778.57Show/hide
Query:  MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLEEPKPKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGF
        MRLLSQTFR QK PIS+P + KSSSSSTK PTLIVK  EP+PK+WCVYLIISSN PIKTYVGVTLDFDRRLKQHNGEIKGGAKAT+AGRPWICAC IHGF
Subjt:  MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLEEPKPKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGF

Query:  KDQSQACEFESKWKKVSRKISYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDP
        KDQSQACEFESKWK++ RK+ + +KE     ++D+ TLRLLK RQRALGKVK LFDC+ FEFDW+LDP
Subjt:  KDQSQACEFESKWKKVSRKISYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDP

XP_004151512.1 structure-specific endonuclease subunit SLX1 [Cucumis sativus]1.7e-8290.59Show/hide
Query:  MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLE-EPKPKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHG
        MRLLS TFRC KPPISNP L KSSSSS+K PTLIVK E +PK KQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKAT+AGRPWICACTIHG
Subjt:  MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLE-EPKPKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHG

Query:  FKDQSQACEFESKWKKVSRKISYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDPF
        FKDQSQACEFESKWKKVSRKISYEKKE+DVGK LD+QTLRLLKHR+RALGKVKCLFDCS FEFDWKLDPF
Subjt:  FKDQSQACEFESKWKKVSRKISYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDPF

XP_008461838.1 PREDICTED: structure-specific endonuclease subunit slx1 [Cucumis melo]3.2e-94100Show/hide
Query:  MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLEEPKPKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGF
        MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLEEPKPKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGF
Subjt:  MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLEEPKPKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGF

Query:  KDQSQACEFESKWKKVSRKISYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDPF
        KDQSQACEFESKWKKVSRKISYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDPF
Subjt:  KDQSQACEFESKWKKVSRKISYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDPF

XP_022934184.1 structure-specific endonuclease subunit slx1 [Cucurbita moschata]8.9e-6878.57Show/hide
Query:  MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLEEPKPKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGF
        MRLLSQTFR QK PIS+P + KSSSSSTK PTLIVK  EP+PK+WCVYLIISSN PIKTYVGVTLDFDRRLKQHNGEIKGGAKAT+AGRPWICAC IHGF
Subjt:  MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLEEPKPKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGF

Query:  KDQSQACEFESKWKKVSRKISYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDP
        KDQSQACEFESKWK++ RK+ + +KE     ++D+ TLRLLK RQRALGKVK LFDC+ FEFDW+LDP
Subjt:  KDQSQACEFESKWKKVSRKISYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDP

XP_038903984.1 structure-specific endonuclease subunit slx1 isoform X1 [Benincasa hispida]1.0e-7987.57Show/hide
Query:  MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLEEPKPKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGF
        MRLLSQTFR QKP  SN +L KSSSSSTK P LIVK  EPKPKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKAT+ GRPW+CACTIHGF
Subjt:  MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLEEPKPKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGF

Query:  KDQSQACEFESKWKKVSRKISYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDPF
        KDQ QACEFESKWK+VSRKISY+KKEDD+GKQ+D+QTLRLLKHRQRALGKVKCLFDCS FEF+WKLDPF
Subjt:  KDQSQACEFESKWKKVSRKISYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDPF

TrEMBL top hitse value%identityAlignment
A0A0A0LCZ9 GIY-YIG domain-containing protein8.1e-8390.59Show/hide
Query:  MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLE-EPKPKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHG
        MRLLS TFRC KPPISNP L KSSSSS+K PTLIVK E +PK KQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKAT+AGRPWICACTIHG
Subjt:  MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLE-EPKPKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHG

Query:  FKDQSQACEFESKWKKVSRKISYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDPF
        FKDQSQACEFESKWKKVSRKISYEKKE+DVGK LD+QTLRLLKHR+RALGKVKCLFDCS FEFDWKLDPF
Subjt:  FKDQSQACEFESKWKKVSRKISYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDPF

A0A1S3CFH5 structure-specific endonuclease subunit slx11.6e-94100Show/hide
Query:  MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLEEPKPKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGF
        MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLEEPKPKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGF
Subjt:  MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLEEPKPKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGF

Query:  KDQSQACEFESKWKKVSRKISYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDPF
        KDQSQACEFESKWKKVSRKISYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDPF
Subjt:  KDQSQACEFESKWKKVSRKISYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDPF

A0A6J1DGL6 structure-specific endonuclease subunit SLX12.9e-6474.27Show/hide
Query:  MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLEEP--KPKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIH
        MRLLS TFRC K PISNP+   SSSSSTK P+      E   KPK WCVYLIISSNSP KTYVGVTL+F RRLKQHNGEIKGGAKAT+AGRPW+CAC IH
Subjt:  MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLEEP--KPKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIH

Query:  GFKDQSQACEFESKWKKVSRKISYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDPF
        GFKDQSQACEFESKWK+VSRKI++++K+DD  +Q D Q LRLLK+RQRAL KVK +FDCS FEFD +LDPF
Subjt:  GFKDQSQACEFESKWKKVSRKISYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDPF

A0A6J1F1V2 structure-specific endonuclease subunit slx14.3e-6878.57Show/hide
Query:  MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLEEPKPKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGF
        MRLLSQTFR QK PIS+P + KSSSSSTK PTLIVK  EP+PK+WCVYLIISSN PIKTYVGVTLDFDRRLKQHNGEIKGGAKAT+AGRPWICAC IHGF
Subjt:  MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLEEPKPKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGF

Query:  KDQSQACEFESKWKKVSRKISYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDP
        KDQSQACEFESKWK++ RK+ + +KE     ++D+ TLRLLK RQRALGKVK LFDC+ FEFDW+LDP
Subjt:  KDQSQACEFESKWKKVSRKISYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDP

A0A6J1J5C9 structure-specific endonuclease subunit slx1 isoform X17.4e-6877.51Show/hide
Query:  MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLEEPKPKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGF
        MRLLSQTFR QK PIS+P + KSSSSSTK PTL +K  EP+ K+WCVYLIISSN PIKTYVGVTLDFDRRLKQHNGEIKGGAKAT+AGRPWICAC IHGF
Subjt:  MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLEEPKPKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGF

Query:  KDQSQACEFESKWKKVSRKISYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDPF
        K+QSQACEFESKWK++ RK+S+ +KE     ++D+QTLRLLK RQRALGKVK LFDC+ FEFDW+LDPF
Subjt:  KDQSQACEFESKWKKVSRKISYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDPF

SwissProt top hitse value%identityAlignment
A8PWH1 Structure-specific endonuclease subunit SLX12.3e-1039.24Show/hide
Query:  LEEPKPKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQSQACEFESKWKK
        +E   P+ +  Y + S + P +TY+G T D  RRL+QHNG +K GA  T+  RPW     ++GF  +  A +FE  W+K
Subjt:  LEEPKPKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQSQACEFESKWKK

B6JY16 Structure-specific endonuclease subunit slx18.5e-1338.18Show/hide
Query:  WCVYLIISSNSPIKT-YVGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQSQACEFESKWKKVSRKISYEKKEDDVGKQLDNQTLRLLKH
        +C YL++S  +  ++ Y+G T D  RRL+QHNGEIKGGA  T+  RPW  AC +HGF  +  A +FE  W+        + ++      +  QTL     
Subjt:  WCVYLIISSNSPIKT-YVGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQSQACEFESKWKKVSRKISYEKKEDDVGKQLDNQTLRLLKH

Query:  RQRALGKVKC
          RALG + C
Subjt:  RQRALGKVKC

B6QFH5 Structure-specific endonuclease subunit slx18.0e-1143.75Show/hide
Query:  EPKPKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATQAG--RPWICACTIHGFKDQSQACEFESKWKKV
        +P P  +C YL+ S   P   Y+G T D  RRL+QHNG  KGGAK T+    RPW     I GF  ++ A +FE  W+ V
Subjt:  EPKPKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATQAG--RPWICACTIHGFKDQSQACEFESKWKKV

B8MDD1 Structure-specific endonuclease subunit slx11.6e-1142.68Show/hide
Query:  LEEPKPKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATQAG--RPWICACTIHGFKDQSQACEFESKWKKV
        L +P P  +C YL+ S+  P   Y+G T D  RRL+QHNG  KGGAK T+    RPW     + GF  ++ A +FE  W+ V
Subjt:  LEEPKPKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATQAG--RPWICACTIHGFKDQSQACEFESKWKKV

Q9P7M3 Structure-specific endonuclease subunit slx11.2e-1139Show/hide
Query:  WCVYLIIS--SNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQSQACEFESKWKKVSRKISYEKKEDDVGKQLDNQTLRLLK
        +C YL+ S  + S    Y+G T D  RRL+QHNGEI GGA  T+ GRPW  +C ++GF ++  A +FE  W+ +   IS   K+ D   +     +  LK
Subjt:  WCVYLIIS--SNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQSQACEFESKWKKVSRKISYEKKEDDVGKQLDNQTLRLLK

Arabidopsis top hitse value%identityAlignment
AT2G30350.2 Excinuclease ABC, C subunit, N-terminal1.7e-0843.86Show/hide
Query:  KTYVGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQSQACEFESKWK
        +TY+G T++  RR++QHNGEI  GA  T+  RPW     I+GF     A +FE  W+
Subjt:  KTYVGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQSQACEFESKWK

AT5G43210.1 Excinuclease ABC, C subunit, N-terminal4.0e-4252.6Show/hide
Query:  RLLSQTFRCQKPPISNPRLP-----KSSSSSTKGPTLIVKLEE---PKPKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATQAGRPWIC
        RLLS+TF   K   SNP+ P     K+S +    P+     E    PK K W VYLI+S+  PIKTYVG+T DF RRLKQHNGEI+GGAKA+ AGRPW+C
Subjt:  RLLSQTFRCQKPPISNPRLP-----KSSSSSTKGPTLIVKLEE---PKPKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATQAGRPWIC

Query:  ACTIHGFKDQSQACEFESKWKKVSRKISYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKL
        AC I GF   SQA  FESKWK  +RK+   KK++D+     +Q+  LL+HR+RAL KV+   DCS+ E DWK+
Subjt:  ACTIHGFKDQSQACEFESKWKKVSRKISYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGACTGCTCTCTCAAACATTTCGTTGCCAAAAACCCCCTATTTCAAATCCACGACTACCCAAATCTTCTTCTTCCTCAACCAAGGGTCCAACACTGATCGTTAAATT
GGAGGAGCCGAAGCCTAAGCAATGGTGTGTTTATCTCATCATCTCCTCCAATTCCCCCATCAAAACCTATGTAGGGGTCACCCTTGACTTCGATCGACGTTTGAAACAGC
ATAATGGTGAAATAAAAGGTGGTGCAAAAGCAACTCAAGCGGGACGACCCTGGATTTGTGCGTGCACAATTCATGGTTTTAAAGACCAAAGTCAAGCTTGTGAGTTTGAA
TCAAAATGGAAAAAAGTTTCAAGGAAAATATCGTATGAGAAGAAGGAGGATGATGTGGGAAAGCAATTAGATAATCAAACATTAAGATTACTCAAGCACAGGCAAAGAGC
TTTAGGAAAAGTGAAGTGTCTGTTTGATTGCAGTCATTTTGAGTTTGATTGGAAATTAGATCCTTTCTGA
mRNA sequenceShow/hide mRNA sequence
AAGGATTGCGAGTGGAAACTCTCAACCAACAACCACAACACTCAGTGATCCTCTTTGCATTGATGAAGAAAAAGAAACAAAGTCAAATAGAAGAGAATGGATGTTGGTTG
CAAATCCAATAGAGATGGAAGTCTTATCCATACATACAAGATGATGCAAACTTGCAATTATAAGTGAACTTTAAAGAGAATTTAAGAAGAACTGGGAGTTTCGAACCCGC
GCTGAAGAAGAGGAACCAAAGAAAGAATTATGAGACTGCTCTCTCAAACATTTCGTTGCCAAAAACCCCCTATTTCAAATCCACGACTACCCAAATCTTCTTCTTCCTCA
ACCAAGGGTCCAACACTGATCGTTAAATTGGAGGAGCCGAAGCCTAAGCAATGGTGTGTTTATCTCATCATCTCCTCCAATTCCCCCATCAAAACCTATGTAGGGGTCAC
CCTTGACTTCGATCGACGTTTGAAACAGCATAATGGTGAAATAAAAGGTGGTGCAAAAGCAACTCAAGCGGGACGACCCTGGATTTGTGCGTGCACAATTCATGGTTTTA
AAGACCAAAGTCAAGCTTGTGAGTTTGAATCAAAATGGAAAAAAGTTTCAAGGAAAATATCGTATGAGAAGAAGGAGGATGATGTGGGAAAGCAATTAGATAATCAAACA
TTAAGATTACTCAAGCACAGGCAAAGAGCTTTAGGAAAAGTGAAGTGTCTGTTTGATTGCAGTCATTTTGAGTTTGATTGGAAATTAGATCCTTTCTGATTCTTTATATG
GGTTGTGGTTTTTCTTTTTCTTTTACAAATATTTATATATTTATTTTCAATTCTATGAATTGAAATAATGATTGTCTATAAGATAAATATCTCACGTTTAAAATTGTGTT
AAATGTAGTATATATGATTGTGTTTTAATTCCGAA
Protein sequenceShow/hide protein sequence
MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLEEPKPKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQSQACEFE
SKWKKVSRKISYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDPF