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MELO3C024166 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C024166
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionRING-type domain-containing protein
Genome locationchr01:4557986..4558438
RNA-Seq ExpressionMELO3C024166
SyntenyMELO3C024166
Gene Ontology termsGO:0015031 - protein transport (biological process)
GO:0016192 - vesicle-mediated transport (biological process)
GO:0030121 - AP-1 adaptor complex (cellular component)
GO:0035615 - clathrin adaptor activity (molecular function)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050549.1 AP-1 complex subunit sigma-2 [Cucumis melo var. makuwa]4.3e-3596.2Show/hide
Query:  MSMATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLTTIPCEVKLLVCRFEELQRGVGSEEEICSVCLTEFTREHLV
        MSMATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLTT+PCEVKLLVCRFEELQRGVGSEEEICS+CLTEFTREHL+
Subjt:  MSMATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLTTIPCEVKLLVCRFEELQRGVGSEEEICSVCLTEFTREHLV

KAE8645705.1 hypothetical protein Csa_020389 [Cucumis sativus]6.1e-3791.21Show/hide
Query:  MIGMALCRGSMSMATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLTT--IPCEVKLLVCRFEELQRGVGSEEEICSVCLTEFTREHLV
        MIGMALCRGSMSMAT+VFLTCVWIPLSQLKAAI+SMFDILSGRTC MLTT  +PCEVKLLVCRFEELQR VGSEEEICSVCLTEFTREHL+
Subjt:  MIGMALCRGSMSMATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLTT--IPCEVKLLVCRFEELQRGVGSEEEICSVCLTEFTREHLV

KAF8020737.1 hypothetical protein BT93_G1238 [Corymbia citriodora subsp. variegata]2.1e-2140.15Show/hide
Query:  MIGMALCRGSMSMATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLTTIPCEVKLLVCRFEELQRG-------VGSEEEICSVCLTEFTREHLVSQMH
        M  +      +S A ++F TC+W+PL QL+ A+  +   +S +  P  ++  C  +L V RF++LQ+         G  E+ CS+CL ++  EHLVS++H
Subjt:  MIGMALCRGSMSMATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLTTIPCEVKLLVCRFEELQRG-------VGSEEEICSVCLTEFTREHLVSQMH

Query:  RCSHVFHLECIESWLQRNRFTCPLCRSFIVQV
        RC HVFH++CIE WL+R++FTCPLCR  +  V
Subjt:  RCSHVFHLECIESWLQRNRFTCPLCRSFIVQV

XP_010027388.2 RING-H2 finger protein ATL18 [Eucalyptus grandis]1.6e-2140.15Show/hide
Query:  MIGMALCRGSMSMATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLTTIPCEVKLLVCRFEELQRGVGSE-------EEICSVCLTEFTREHLVSQMH
        M  +   +  +S A ++F TC+W+PL QL+ A++ +   +  +  P   +  C  +L V RF++LQ+  G E       E+ CS+CL ++  EHLVS++H
Subjt:  MIGMALCRGSMSMATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLTTIPCEVKLLVCRFEELQRGVGSE-------EEICSVCLTEFTREHLVSQMH

Query:  RCSHVFHLECIESWLQRNRFTCPLCRSFIVQV
        RC HVFH++CIE WL+R++FTCPLCR  +  V
Subjt:  RCSHVFHLECIESWLQRNRFTCPLCRSFIVQV

XP_030539517.1 RING-H2 finger protein ATL18-like [Rhodamnia argentea]5.5e-2242.75Show/hide
Query:  MIGMALCRGSMSMATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLTTIPCEVKLLVCRFEELQRGVGSEEE------ICSVCLTEFTREHLVSQMHR
        M  +   +  +S A ++F TC+W+PL QL+ AI+ +   +S +  P  ++  C  +L V RF++LQ+  G EEE       CS+CL ++  E LVS++HR
Subjt:  MIGMALCRGSMSMATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLTTIPCEVKLLVCRFEELQRGVGSEEE------ICSVCLTEFTREHLVSQMHR

Query:  CSHVFHLECIESWLQRNRFTCPLCRSFIVQV
        C HVFHL+CIE WL+R++FTCPLCR  +  V
Subjt:  CSHVFHLECIESWLQRNRFTCPLCRSFIVQV

TrEMBL top hitse value%identityAlignment
A0A0A0K513 RING-type domain-containing protein1.2e-5991.41Show/hide
Query:  MIGMALCRGSMSMATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLTT--IPCEVKLLVCRFEELQRGVGSEEEICSVCLTEFTREHLVSQMHRCSHV
        MIGMALCRGSMSMAT+VFLTCVWIPLSQLKAAI+SMFDILSGRTC MLTT  +PCEVKLLVCRFEELQR VGSEEEICSVCLTEFTREHLVSQ+HRCSHV
Subjt:  MIGMALCRGSMSMATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLTT--IPCEVKLLVCRFEELQRGVGSEEEICSVCLTEFTREHLVSQMHRCSHV

Query:  FHLECIESWLQRNRFTCPLCRSFIVQVL
        FHLECIESWLQRN+FTCPLCRSFI Q L
Subjt:  FHLECIESWLQRNRFTCPLCRSFIVQVL

A0A0D2SLB9 RING-type domain-containing protein5.0e-2142.06Show/hide
Query:  MIGMALCRGSMSMATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLTTIPCEVKLLVCRFEELQRGVG----SEEEICSVCLTEFTREHLVSQMHRCS
        MI +         A ++F TCVWIP  Q K  + S+   +  R+C  +      V L V RFE+L+   G    +EEE+CS+CL EF  +  VSQ+ +C 
Subjt:  MIGMALCRGSMSMATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLTTIPCEVKLLVCRFEELQRGVG----SEEEICSVCLTEFTREHLVSQMHRCS

Query:  HVFHLECIESWLQRNRFTCPLCRSFI
        HVFH+ CIE W++R  FTCPLCRS +
Subjt:  HVFHLECIESWLQRNRFTCPLCRSFI

A0A5D2M180 RING-type domain-containing protein5.0e-2142.06Show/hide
Query:  MIGMALCRGSMSMATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLTTIPCEVKLLVCRFEELQRGVG----SEEEICSVCLTEFTREHLVSQMHRCS
        MI +         A ++F TCVWIP  Q K  + S+   +  R+C  +      V L V RFE+L+   G    +EEE+CS+CL EF  +  VSQ+ +C 
Subjt:  MIGMALCRGSMSMATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLTTIPCEVKLLVCRFEELQRGVG----SEEEICSVCLTEFTREHLVSQMHRCS

Query:  HVFHLECIESWLQRNRFTCPLCRSFI
        HVFH+ CIE W++R  FTCPLCRS +
Subjt:  HVFHLECIESWLQRNRFTCPLCRSFI

A0A5D3D5G1 AP-1 complex subunit sigma-22.1e-3596.2Show/hide
Query:  MSMATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLTTIPCEVKLLVCRFEELQRGVGSEEEICSVCLTEFTREHLV
        MSMATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLTT+PCEVKLLVCRFEELQRGVGSEEEICS+CLTEFTREHL+
Subjt:  MSMATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLTTIPCEVKLLVCRFEELQRGVGSEEEICSVCLTEFTREHLV

A0A6P6AC29 RING-H2 finger protein ATL18-like1.3e-2142.22Show/hide
Query:  MIGMALCRGSMSMATVVFLTCVWIPLSQLKAAIASMFDIL-----SGRTCPMLTTIPCEVKLLVCRFEELQRGVGSE--------EEICSVCLTEFTREH
        MI +      +S A ++F TCVWIP  QLK A+  +   +     +  +C ++      V L V RFE+L+   GS         EE+CS+CL EF +E 
Subjt:  MIGMALCRGSMSMATVVFLTCVWIPLSQLKAAIASMFDIL-----SGRTCPMLTTIPCEVKLLVCRFEELQRGVGSE--------EEICSVCLTEFTREH

Query:  LVSQMHRCSHVFHLECIESWLQRNRFTCPLCRSFI
        +VSQ+H+C H+FH+ CIE WL R++FTCPLCRSF+
Subjt:  LVSQMHRCSHVFHLECIESWLQRNRFTCPLCRSFI

SwissProt top hitse value%identityAlignment
Q84TF5 Probable E3 ubiquitin-protein ligase RHA4A2.8e-0838.46Show/hide
Query:  CPMLTTIPCEVKLLVCRFEELQRGVGSEEEICSVCLTEFTREHLVSQMHRCSHVFHLECIESWLQRNRFTCPLCRSFI
        C +   +  + KL V  F E    +G+ + +C VCL EF  +  + +M  C H+FHL+CI  WL  +  TCPLCRS +
Subjt:  CPMLTTIPCEVKLLVCRFEELQRGVGSEEEICSVCLTEFTREHLVSQMHRCSHVFHLECIESWLQRNRFTCPLCRSFI

Q9FL07 RING-H2 finger protein ATL462.8e-0850Show/hide
Query:  GVGSEEEICSVCLTEFTREHLVSQMHRCSHVFHLECIESWLQRNRFTCPLCR
        G   E   C+VCL EF+ +  +  +  CSH FHL CI++WLQ N  TCPLCR
Subjt:  GVGSEEEICSVCLTEFTREHLVSQMHRCSHVFHLECIESWLQRNRFTCPLCR

Q9LSW9 RING-H2 finger protein ATL161.6e-0850Show/hide
Query:  GVGSEEE-----ICSVCLTEFTREHLVSQMHRCSHVFHLECIESWLQRNRFTCPLCRS
        G G EEE      CSVCL+EF  E  +  +  CSH+FH++CI+ WLQ N   CPLCR+
Subjt:  GVGSEEE-----ICSVCLTEFTREHLVSQMHRCSHVFHLECIESWLQRNRFTCPLCRS

Q9SZL4 RING-H2 finger protein ATL189.8e-1437.6Show/hide
Query:  MIGMALCRGSMSMATVVFLTCVWIPLSQLK--AAIASMFDILSGRTCPMLTTIPCEVKLLVCRFEELQRGVGSEEEICSVCLTEFTREHLVSQMHRCSHV
        MI M   R  +  A +VF TCV IPL +LK     A   D                  L+   F + ++    EE  C +CL EF  E  V+ + RC+H+
Subjt:  MIGMALCRGSMSMATVVFLTCVWIPLSQLK--AAIASMFDILSGRTCPMLTTIPCEVKLLVCRFEELQRGVGSEEEICSVCLTEFTREHLVSQMHRCSHV

Query:  FHLECIESWLQRNRFTCPLCRSFIV
        FH+ CIE WL R   TCPLCRSF++
Subjt:  FHLECIESWLQRNRFTCPLCRSFIV

Q9XF92 Brassinosteroid-responsive RING protein 14.3e-0940.62Show/hide
Query:  LLVCRFEELQRGVGSEEEICSVCLTEFTREHLVSQMHRCSHVFHLECIESWLQRNRFTCPLCRS
        L V +FEEL        E C+VCL EF  E  +  +  C H+FH  C++ W+  ++ TCPLCR+
Subjt:  LLVCRFEELQRGVGSEEEICSVCLTEFTREHLVSQMHRCSHVFHLECIESWLQRNRFTCPLCRS

Arabidopsis top hitse value%identityAlignment
AT1G24580.1 RING/U-box superfamily protein8.8e-1030.28Show/hide
Query:  IPLSQLKAAIASMFDILSGRTCPMLTTIP------CEVKLLVCRFEELQRGVGSEEE----ICSVCLTEFTREHLVSQMHRCSHVFHLECIESWLQRNRF
        + ++ LK  + S+F I++  T   +             ++ + +F+ L   +  EEE     C VCL  F  E  VS++  C H FH  C+++W   N  
Subjt:  IPLSQLKAAIASMFDILSGRTCPMLTTIP------CEVKLLVCRFEELQRGVGSEEE----ICSVCLTEFTREHLVSQMHRCSHVFHLECIESWLQRNRF

Query:  TCPLCRSFI
        TCPLCRS +
Subjt:  TCPLCRSFI

AT1G67856.1 RING/U-box superfamily protein1.1e-0939.44Show/hide
Query:  KLLVCRFEELQRGVGSEEE----ICSVCLTEFTREHLVSQMHRCSHVFHLECIESWLQRNRFTCPLCRSFI
        ++ +  FE L    GS  E     C VCL  F  E  VS++  C H FH  C++ W   N  TCPLCRS +
Subjt:  KLLVCRFEELQRGVGSEEE----ICSVCLTEFTREHLVSQMHRCSHVFHLECIESWLQRNRFTCPLCRSFI

AT3G61460.1 brassinosteroid-responsive RING-H23.0e-1040.62Show/hide
Query:  LLVCRFEELQRGVGSEEEICSVCLTEFTREHLVSQMHRCSHVFHLECIESWLQRNRFTCPLCRS
        L V +FEEL        E C+VCL EF  E  +  +  C H+FH  C++ W+  ++ TCPLCR+
Subjt:  LLVCRFEELQRGVGSEEEICSVCLTEFTREHLVSQMHRCSHVFHLECIESWLQRNRFTCPLCRS

AT4G33565.1 RING/U-box superfamily protein1.1e-0940.24Show/hide
Query:  RTCPMLTTIPCEVKLLVCRFEELQRGVGSEEEICSVCLTEFTREHLVSQMHRCSHVFHLECIESWLQRNRFTCPLCRSFIVQ
        RT  +  T+   +K  VC++ +    V  E   CSVCL+EF  E  +  + +C H FHL CI++WL R+   CPLCR+ IV+
Subjt:  RTCPMLTTIPCEVKLLVCRFEELQRGVGSEEEICSVCLTEFTREHLVSQMHRCSHVFHLECIESWLQRNRFTCPLCRSFIVQ

AT4G38140.1 RING/U-box superfamily protein7.0e-1537.6Show/hide
Query:  MIGMALCRGSMSMATVVFLTCVWIPLSQLK--AAIASMFDILSGRTCPMLTTIPCEVKLLVCRFEELQRGVGSEEEICSVCLTEFTREHLVSQMHRCSHV
        MI M   R  +  A +VF TCV IPL +LK     A   D                  L+   F + ++    EE  C +CL EF  E  V+ + RC+H+
Subjt:  MIGMALCRGSMSMATVVFLTCVWIPLSQLK--AAIASMFDILSGRTCPMLTTIPCEVKLLVCRFEELQRGVGSEEEICSVCLTEFTREHLVSQMHRCSHV

Query:  FHLECIESWLQRNRFTCPLCRSFIV
        FH+ CIE WL R   TCPLCRSF++
Subjt:  FHLECIESWLQRNRFTCPLCRSFIV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATAGGTATGGCATTATGTAGAGGTTCAATGTCCATGGCCACCGTTGTCTTCTTAACTTGTGTGTGGATCCCTTTGAGCCAACTGAAGGCAGCCATTGCGAGCATGTT
TGACATTCTATCGGGTCGAACATGTCCGATGCTCACGACAATACCGTGTGAGGTGAAACTTCTGGTTTGTAGGTTCGAAGAGCTGCAGCGTGGGGTTGGATCGGAGGAGG
AAATTTGCTCCGTTTGCTTGACGGAGTTCACCAGAGAACATTTGGTGAGCCAAATGCATAGATGTAGCCATGTTTTCCATCTAGAATGTATTGAGAGTTGGCTACAAAGA
AACCGATTTACCTGCCCTCTCTGCAGATCCTTCATTGTCCAAGTATTGTGA
mRNA sequenceShow/hide mRNA sequence
AGAAACCAACAAAAAAAAGAAATAGAAGAAGGGGGCTGCTGGTCTTGAGTTTTTGGCAGAATAATGATAGGTATGGCATTATGTAGAGGTTCAATGTCCATGGCCACCGT
TGTCTTCTTAACTTGTGTGTGGATCCCTTTGAGCCAACTGAAGGCAGCCATTGCGAGCATGTTTGACATTCTATCGGGTCGAACATGTCCGATGCTCACGACAATACCGT
GTGAGGTGAAACTTCTGGTTTGTAGGTTCGAAGAGCTGCAGCGTGGGGTTGGATCGGAGGAGGAAATTTGCTCCGTTTGCTTGACGGAGTTCACCAGAGAACATTTGGTG
AGCCAAATGCATAGATGTAGCCATGTTTTCCATCTAGAATGTATTGAGAGTTGGCTACAAAGAAACCGATTTACCTGCCCTCTCTGCAGATCCTTCATTGTCCAAGTATT
GTGAATCTTTTAG
Protein sequenceShow/hide protein sequence
MIGMALCRGSMSMATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLTTIPCEVKLLVCRFEELQRGVGSEEEICSVCLTEFTREHLVSQMHRCSHVFHLECIESWLQR
NRFTCPLCRSFIVQVL