; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MELO3C024167 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C024167
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionAP complex subunit sigma
Genome locationchr01:4554226..4556447
RNA-Seq ExpressionMELO3C024167
SyntenyMELO3C024167
Gene Ontology termsGO:0006886 - intracellular protein transport (biological process)
GO:0016192 - vesicle-mediated transport (biological process)
GO:0030121 - AP-1 adaptor complex (cellular component)
GO:0035615 - clathrin adaptor activity (molecular function)
InterPro domainsIPR011012 - Longin-like domain superfamily
IPR016635 - Adaptor protein complex, sigma subunit
IPR022775 - AP complex, mu/sigma subunit
IPR044733 - AP-1 complex subunit sigma


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050549.1 AP-1 complex subunit sigma-2 [Cucumis melo var. makuwa]2.0e-61100Show/hide
Query:  MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAA
        MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAA
Subjt:  MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAA

Query:  QDSLVETAKEQASSISNIIAQATK
        QDSLVETAKEQASSISNIIAQATK
Subjt:  QDSLVETAKEQASSISNIIAQATK

KAE8645705.1 hypothetical protein Csa_020389 [Cucumis sativus]5.9e-6199.19Show/hide
Query:  MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAA
        MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQ+DNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAA
Subjt:  MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAA

Query:  QDSLVETAKEQASSISNIIAQATK
        QDSLVETAKEQASSISNIIAQATK
Subjt:  QDSLVETAKEQASSISNIIAQATK

XP_004144562.1 AP-1 complex subunit sigma-1 [Cucumis sativus]5.9e-6199.19Show/hide
Query:  MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAA
        MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQ+DNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAA
Subjt:  MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAA

Query:  QDSLVETAKEQASSISNIIAQATK
        QDSLVETAKEQASSISNIIAQATK
Subjt:  QDSLVETAKEQASSISNIIAQATK

XP_008462009.1 PREDICTED: AP-1 complex subunit sigma-2 [Cucumis melo]2.0e-61100Show/hide
Query:  MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAA
        MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAA
Subjt:  MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAA

Query:  QDSLVETAKEQASSISNIIAQATK
        QDSLVETAKEQASSISNIIAQATK
Subjt:  QDSLVETAKEQASSISNIIAQATK

XP_038888262.1 AP-1 complex subunit sigma-2 [Benincasa hispida]2.7e-6199.19Show/hide
Query:  MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAA
        MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELE+LEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAA
Subjt:  MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAA

Query:  QDSLVETAKEQASSISNIIAQATK
        QDSLVETAKEQASSISNIIAQATK
Subjt:  QDSLVETAKEQASSISNIIAQATK

TrEMBL top hitse value%identityAlignment
A0A0A0K1P7 AP complex subunit sigma2.9e-6199.19Show/hide
Query:  MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAA
        MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQ+DNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAA
Subjt:  MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAA

Query:  QDSLVETAKEQASSISNIIAQATK
        QDSLVETAKEQASSISNIIAQATK
Subjt:  QDSLVETAKEQASSISNIIAQATK

A0A1S3CGG1 AP complex subunit sigma9.9e-62100Show/hide
Query:  MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAA
        MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAA
Subjt:  MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAA

Query:  QDSLVETAKEQASSISNIIAQATK
        QDSLVETAKEQASSISNIIAQATK
Subjt:  QDSLVETAKEQASSISNIIAQATK

A0A5D3D5G1 AP-1 complex subunit sigma-29.9e-62100Show/hide
Query:  MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAA
        MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAA
Subjt:  MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAA

Query:  QDSLVETAKEQASSISNIIAQATK
        QDSLVETAKEQASSISNIIAQATK
Subjt:  QDSLVETAKEQASSISNIIAQATK

A0A6J1C1K2 AP complex subunit sigma3.7e-6198.39Show/hide
Query:  MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAA
        MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQ+DNELE+LEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAA
Subjt:  MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAA

Query:  QDSLVETAKEQASSISNIIAQATK
        QDSLVETAKEQASSISNIIAQATK
Subjt:  QDSLVETAKEQASSISNIIAQATK

A0A6J1I247 AP complex subunit sigma1.1e-6098.39Show/hide
Query:  MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAA
        MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLE IHH+VEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAA
Subjt:  MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAA

Query:  QDSLVETAKEQASSISNIIAQATK
        QDSLVETAKEQASSISNIIAQATK
Subjt:  QDSLVETAKEQASSISNIIAQATK

SwissProt top hitse value%identityAlignment
B0G185 AP-1 complex subunit sigma-23.4e-4376.42Show/hide
Query:  MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAA
        M+LNR PKLCNF+EW+  K ++KRYASLYF +C D++DNEL VLEIIHH+VEILDRYFG+VCELDLIFNFHKAYYILDEL++AGELQE+SKKTV RLI+ 
Subjt:  MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAA

Query:  QDSLVE
        QD+L+E
Subjt:  QDSLVE

O23685 AP-1 complex subunit sigma-28.9e-6092.68Show/hide
Query:  MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAA
        +ILNRGPKLCNFVEWRG K VYKRYASLYFCMCIDQ+DNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVAR+I+A
Subjt:  MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAA

Query:  QDSLVETAKEQASSISNIIAQAT
        QD LVE AKE+ASSISNIIAQAT
Subjt:  QDSLVETAKEQASSISNIIAQAT

Q3ZBS3 AP-1 complex subunit sigma-21.1e-3666.97Show/hide
Query:  ILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQ
        +L R PK+C+F+EWR LK VYKRYASLYFC  I+  DNEL  LEIIH YVE+LD+YFGSVCELD+IFNF KAY+ILDE L+ GE+QE+SKK V + I   
Subjt:  ILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQ

Query:  DSLVETAKE
        D L E AKE
Subjt:  DSLVETAKE

Q8LEZ8 AP-1 complex subunit sigma-12.0e-5991.13Show/hide
Query:  MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAA
        +ILNRGPKLCNF+EWRG K VYKRYASLYFCMCID+ DNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVAR+I+A
Subjt:  MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAA

Query:  QDSLVETAKEQASSISNIIAQATK
        QD LVE AKE+ASSISNIIAQATK
Subjt:  QDSLVETAKEQASSISNIIAQATK

Q9DB50 AP-1 complex subunit sigma-21.1e-3666.97Show/hide
Query:  ILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQ
        +L R PK+C+F+EWR LK VYKRYASLYFC  I+  DNEL  LEIIH YVE+LD+YFGSVCELD+IFNF KAY+ILDE L+ GE+QE+SKK V + I   
Subjt:  ILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQ

Query:  DSLVETAKE
        D L E AKE
Subjt:  DSLVETAKE

Arabidopsis top hitse value%identityAlignment
AT1G47830.1 SNARE-like superfamily protein6.4e-2953.85Show/hide
Query:  MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAA
        +++NR  K  NFVE+R  K +Y+RYA L+F +C+D  DNEL  LE IH +VEILD +F +VCELDL+FNFHK Y ILDE ++AGELQE+SK+ +   ++ 
Subjt:  MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAA

Query:  QDSL
         + L
Subjt:  QDSL

AT2G17380.1 associated protein 191.4e-6091.13Show/hide
Query:  MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAA
        +ILNRGPKLCNF+EWRG K VYKRYASLYFCMCID+ DNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVAR+I+A
Subjt:  MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAA

Query:  QDSLVETAKEQASSISNIIAQATK
        QD LVE AKE+ASSISNIIAQATK
Subjt:  QDSLVETAKEQASSISNIIAQATK

AT2G19790.1 SNARE-like superfamily protein7.5e-2246Show/hide
Query:  LNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQD
        L R  + C+FVE R  K VY+RYASL+F + +D D+NEL +LE IH  VE +D++FG+VCELD++F+  KA+++L+E+++ G + E+SK  +   I   D
Subjt:  LNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQD

AT4G35410.1 Clathrin adaptor complex small chain family protein6.4e-3794.44Show/hide
Query:  MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHK
        +ILNRGPKLCNFVEWRG K VYKRYASLYFCMCIDQ+DNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHK
Subjt:  MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHK

AT4G35410.2 Clathrin adaptor complex small chain family protein6.3e-6192.68Show/hide
Query:  MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAA
        +ILNRGPKLCNFVEWRG K VYKRYASLYFCMCIDQ+DNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVAR+I+A
Subjt:  MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAA

Query:  QDSLVETAKEQASSISNIIAQAT
        QD LVE AKE+ASSISNIIAQAT
Subjt:  QDSLVETAKEQASSISNIIAQAT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTCTAAATCGAGGGCCTAAGCTTTGTAACTTTGTGGAATGGAGGGGACTGAAAGCTGTCTATAAACGATATGCTAGTCTTTACTTTTGCATGTGCATCGATCAGGA
TGACAATGAACTAGAGGTCCTTGAAATTATTCATCATTACGTTGAGATTTTGGACCGTTACTTCGGCAGTGTCTGCGAATTGGATTTGATCTTCAACTTTCACAAGGCCT
ATTATATATTGGATGAGCTTCTAATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTAGCAAGATTGATAGCCGCACAGGATTCGTTGGTGGAGACTGCAAAGGAG
CAAGCTAGTTCAATTAGTAACATAATTGCACAGGCCACCAAGTAG
mRNA sequenceShow/hide mRNA sequence
ATAAGCTTTTAGTGTGGTTCAAAAAACAAAGTCATTAGAGTTTATGCTCGAGATGTACATACGGGTGGAACAATATATACCATCGTAGAGATATATAAGATTCTGTTGTC
CTTGACTAGACCGGAGAAGTGGAAATTCTTGTTTCATTTCGTTTGTTCTCAAGCTTATTCACTTTGTGCTTCTTATAAGTAGACAAGGAAAAGTGAGGTTGACAAAATGG
TATTCTCCATATTCTCAGAAGGAGAGATCTAAGGTTATCCGTGAGCTCAGTGGAATGATTCTAAATCGAGGGCCTAAGCTTTGTAACTTTGTGGAATGGAGGGGACTGAA
AGCTGTCTATAAACGATATGCTAGTCTTTACTTTTGCATGTGCATCGATCAGGATGACAATGAACTAGAGGTCCTTGAAATTATTCATCATTACGTTGAGATTTTGGACC
GTTACTTCGGCAGTGTCTGCGAATTGGATTTGATCTTCAACTTTCACAAGGCCTATTATATATTGGATGAGCTTCTAATTGCTGGTGAACTCCAAGAATCAAGCAAGAAA
ACAGTAGCAAGATTGATAGCCGCACAGGATTCGTTGGTGGAGACTGCAAAGGAGCAAGCTAGTTCAATTAGTAACATAATTGCACAGGCCACCAAGTAGATGAATAACTT
GAGAGTGTATGTTTCAGTTTTTGCGAAATTGATTTGTTCTGAAGTATTGTAATTATATGTTATCTCAACTTGTATCAAACAAGTTAATGCCTTATTTTTGCTTATTTCAT
TTGTTGTATTCCACAAATTGCTTTTTGGAATTTCTAGTAGTTCCATCTACCTGCCTAACTGTTCTCCTCGATTTTTCTATTGTTCATCATATACAAATGTTATTGCTTGC
TGGAAATGGTTGATCTCCTATACTTGCTTTC
Protein sequenceShow/hide protein sequence
MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKE
QASSISNIIAQATK