CuGenDBv2

Gene ID	MELO3C024372
Organism	Cucumis melo DHL92 (Melon (DHL92) v4)
Description	DNA-directed RNA polymerase I subunit rpa49
Genome location	chr01:35240051..35243604
RNA-Seq Expression	MELO3C024372
Synteny	MELO3C024372
Gene Ontology terms	GO:0001188 - RNA polymerase I preinitiation complex assembly (biological process) GO:0006362 - transcription elongation from RNA polymerase I promoter (biological process) GO:0042790 - nucleolar large rRNA transcription by RNA polymerase I (biological process) GO:0005736 - RNA polymerase I complex (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domains	IPR009668 - RNA polymerase I associated factor, A49-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0059416.1 DNA-directed RNA polymerase I subunit rpa49 [Cucumis melo var. makuwa]

3.5e-241

99.77

Show/hide

Query:  MAEDTKSLEFEENHNAEPDANSQSPAKKKKKSEKKKKRVLSMNAKIQVLSNQPQKIPPVVGYFPSGFDPHKDADKEQSHSVRARVYKHRNKPNRMQLVVS
        MAEDTKSLE EENHNAEPDANSQSPAKKKKKSEKKKKRVLSMNAKIQVLSNQPQKIPPVVGYFPSGFDPHKDADKEQSHSVRARVYKHRNKPNRMQLVVS
Subjt:  MAEDTKSLEFEENHNAEPDANSQSPAKKKKKSEKKKKRVLSMNAKIQVLSNQPQKIPPVVGYFPSGFDPHKDADKEQSHSVRARVYKHRNKPNRMQLVVS

Query:  PTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMILRLDPKVRGSDVSENESPSVANEELSLQEKANRMRELTALYGTKKSKKQAQK
        PTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMILRLDPKVRGSDVSENESPSVANEELSLQEKANRMRELTALYGTKKSKKQAQK
Subjt:  PTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMILRLDPKVRGSDVSENESPSVANEELSLQEKANRMRELTALYGTKKSKKQAQK

Query:  LHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEIARNIPAYNASATTPQEVYPLDKIILKGEWSFLEDLYFRLRETAEINATYPSFVRNRIYKLQDI
        LHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEIARNIPAYNASATTPQEVYPLDKIILKGEWSFLEDLYFRLRETAEINATYPSFVRNRIYKLQDI
Subjt:  LHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEIARNIPAYNASATTPQEVYPLDKIILKGEWSFLEDLYFRLRETAEINATYPSFVRNRIYKLQDI

Query:  QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPYDLR
        QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPYDLR
Subjt:  QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPYDLR

Query:  LHFDNLGCKFIRKNNLSLATLPVPLQFPELRQKRRR
        LHFDNLGCKFIRKNNLSLATLPVPLQFPELRQKRRR
Subjt:  LHFDNLGCKFIRKNNLSLATLPVPLQFPELRQKRRR

XP_004141689.1 DNA-directed RNA polymerase I subunit rpa49 [Cucumis sativus]

2.9e-227

94.27

Show/hide

Query:  MAEDTKSLEFEENHNAEPDANSQSPAKKKKKSEKKKKRVLSMNAKIQVLSNQPQKIPPVVGYFPSGFDPHKDADKEQSHSVRARVYKHRNKPNRMQLVVS
        MA+DTKS+E EENH     A+SQSPAKKKKKSEKKKKRVLSM+AKIQVLSNQPQK PPVVGYFPSGFDPHKDADKEQS SVRARVYKH+N+PNRMQLVVS
Subjt:  MAEDTKSLEFEENHNAEPDANSQSPAKKKKKSEKKKKRVLSMNAKIQVLSNQPQKIPPVVGYFPSGFDPHKDADKEQSHSVRARVYKHRNKPNRMQLVVS

Query:  PTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMILRLDPKVRGSDVSENESPSVANEELSLQEKANRMRELTALYGTKKSKKQAQK
        PTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMI RLDPKVRGSDV+ENESPSVANEELS Q+KANRMRELTALYGTKKSKKQAQK
Subjt:  PTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMILRLDPKVRGSDVSENESPSVANEELSLQEKANRMRELTALYGTKKSKKQAQK

Query:  LHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEIARNIPAYNASATTPQEVYPLDKIILKGEWSFLEDLYFRLRETAEINATYPSFVRNRIYKLQDI
        LHALKQEDDPETK+DLDGRMKNVVVNKEALEGTQAE+ARNIPAYNASATTPQE YPLDKIILKGEWSFLEDLYFRL+ETAEI+ATYPSFVRNRIYKLQDI
Subjt:  LHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEIARNIPAYNASATTPQEVYPLDKIILKGEWSFLEDLYFRLRETAEINATYPSFVRNRIYKLQDI

Query:  QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPYDLR
        QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVL+LFADEFSSDPADIAKDLRTSPYDLR
Subjt:  QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPYDLR

Query:  LHFDNLGCKFIRKNNLSLATLPVPLQFPELRQKRRR
        LHFDNLGCKFIRKNNLSLATLP+PLQFPELRQKRRR
Subjt:  LHFDNLGCKFIRKNNLSLATLPVPLQFPELRQKRRR

XP_008462335.1 PREDICTED: DNA-directed RNA polymerase I subunit rpa49 [Cucumis melo]

7.0e-242

100

Show/hide

Query:  MAEDTKSLEFEENHNAEPDANSQSPAKKKKKSEKKKKRVLSMNAKIQVLSNQPQKIPPVVGYFPSGFDPHKDADKEQSHSVRARVYKHRNKPNRMQLVVS
        MAEDTKSLEFEENHNAEPDANSQSPAKKKKKSEKKKKRVLSMNAKIQVLSNQPQKIPPVVGYFPSGFDPHKDADKEQSHSVRARVYKHRNKPNRMQLVVS
Subjt:  MAEDTKSLEFEENHNAEPDANSQSPAKKKKKSEKKKKRVLSMNAKIQVLSNQPQKIPPVVGYFPSGFDPHKDADKEQSHSVRARVYKHRNKPNRMQLVVS

Query:  PTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMILRLDPKVRGSDVSENESPSVANEELSLQEKANRMRELTALYGTKKSKKQAQK
        PTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMILRLDPKVRGSDVSENESPSVANEELSLQEKANRMRELTALYGTKKSKKQAQK
Subjt:  PTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMILRLDPKVRGSDVSENESPSVANEELSLQEKANRMRELTALYGTKKSKKQAQK

Query:  LHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEIARNIPAYNASATTPQEVYPLDKIILKGEWSFLEDLYFRLRETAEINATYPSFVRNRIYKLQDI
        LHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEIARNIPAYNASATTPQEVYPLDKIILKGEWSFLEDLYFRLRETAEINATYPSFVRNRIYKLQDI
Subjt:  LHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEIARNIPAYNASATTPQEVYPLDKIILKGEWSFLEDLYFRLRETAEINATYPSFVRNRIYKLQDI

Query:  QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPYDLR
        QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPYDLR
Subjt:  QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPYDLR

Query:  LHFDNLGCKFIRKNNLSLATLPVPLQFPELRQKRRR
        LHFDNLGCKFIRKNNLSLATLPVPLQFPELRQKRRR
Subjt:  LHFDNLGCKFIRKNNLSLATLPVPLQFPELRQKRRR

XP_022992259.1 DNA-directed RNA polymerase I subunit rpa49-like [Cucurbita maxima]

2.0e-204

84.05

Show/hide

Query:  MAEDTKSLEFEENHNAEPDANSQSPAKKKKKSEKKKKRVLSMNAKIQVLSNQPQKIPPVVGYFPSGFDPHKDADK---EQSHSVRARVYKHRNKPNRMQL
        MAEDTKS E E+NH +EPDANSQSPAKKKKKSEKKKKRV S+NAKIQVLSN PQK PP+V YFPSGFDPHKDA++   E+  SVRARVY+H+NKPNRMQL
Subjt:  MAEDTKSLEFEENHNAEPDANSQSPAKKKKKSEKKKKRVLSMNAKIQVLSNQPQKIPPVVGYFPSGFDPHKDADK---EQSHSVRARVYKHRNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMILRLDPKVRGSDVSENESPSVANEELSLQEKANRMRELTALYGTKKSKKQ
        VVSPTGSNVDFVGTNYLGEATAGKQHC+Y LGVLDKATQSLKIVPIASNMI RLDP++RGSDVSE ES SV NEELS+QEKA +MRELT LYGTKKS  Q
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMILRLDPKVRGSDVSENESPSVANEELSLQEKANRMRELTALYGTKKSKKQ

Query:  AQKLHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEIARNIPAYNASATTPQEVYPLDKIILKGEWSFLEDLYFRLRETAEINATYPSFVRNRIYKL
        A+KLH+LKQEDDP+TK DLDG+MKNVVVNKEALE T A+IARNIP YN SATTP+E YPLDKIILKGEWSFLED+Y  L+E AEI+A YPSFVRNRIYKL
Subjt:  AQKLHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEIARNIPAYNASATTPQEVYPLDKIILKGEWSFLEDLYFRLRETAEINATYPSFVRNRIYKL

Query:  QDIQDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPY
        QD+QDEEEKK+LC IFSYITHLIKYKDQHSMGDV+SAK HK PSM+RQKFSSMFPT+E+RRLS + INLLISHVLVLTLFADEFSSDP+DIAKDLRTSPY
Subjt:  QDIQDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPY

Query:  DLRLHFDNLGCKFIRKNNLSLATLPVPLQFPELRQKRRR
        DLRLHFDNLGCKFIRKNNLSL TLP PL+FPELRQKRRR
Subjt:  DLRLHFDNLGCKFIRKNNLSLATLPVPLQFPELRQKRRR

XP_038896156.1 DNA-directed RNA polymerase I subunit rpa49 [Benincasa hispida]

5.8e-220

91.06

Show/hide

Query:  MAEDTKSLEFEENHNAEPDANSQSPAKKKKKSEKKKKRVLSMNAKIQVLSNQPQKIPPVVGYFPSGFDPHKDADKEQSHSVRARVYKHRNKPNRMQLVVS
        MAEDTKSLE EENH AE D NS+SPAKKKKKSEKKKKRV S+NAKIQVL N PQK PP+VGYFPSGFDPHKDAD+EQ +SVRARVYKH+NKPNRMQLVVS
Subjt:  MAEDTKSLEFEENHNAEPDANSQSPAKKKKKSEKKKKRVLSMNAKIQVLSNQPQKIPPVVGYFPSGFDPHKDADKEQSHSVRARVYKHRNKPNRMQLVVS

Query:  PTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMILRLDPKVRGSDVSENESPSVANEELSLQEKANRMRELTALYGTKKSKKQAQK
        PTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMI RLDPKVRGSDVSENESPSVANEELS+QEKA+RMRELT LYGTKKSKKQAQK
Subjt:  PTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMILRLDPKVRGSDVSENESPSVANEELSLQEKANRMRELTALYGTKKSKKQAQK

Query:  LHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEIARNIPAYNASATTPQEVYPLDKIILKGEWSFLEDLYFRLRETAEINATYPSFVRNRIYKLQDI
        LHALKQEDDP+TK DLD RMKNVVVN EALEGTQAEIARNIP YNASATTPQE YPLDKIILKGEW+FLEDLYFRL+ETAEI+A YP FVR+RIYKLQDI
Subjt:  LHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEIARNIPAYNASATTPQEVYPLDKIILKGEWSFLEDLYFRLRETAEINATYPSFVRNRIYKLQDI

Query:  QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPYDLR
        QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPT+ESRR+S +KINLLISHVLVLTLF DEFSSDPADIAKDLRTSPYDLR
Subjt:  QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPYDLR

Query:  LHFDNLGCKFIRKNNLSLATLPVPLQFPELRQKRRR
        LHFDNLGCKFIRKNNLSL TLP+PLQFP+LRQKRRR
Subjt:  LHFDNLGCKFIRKNNLSLATLPVPLQFPELRQKRRR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KCN4 Uncharacterized protein

1.4e-227

94.27

Show/hide

Query:  MAEDTKSLEFEENHNAEPDANSQSPAKKKKKSEKKKKRVLSMNAKIQVLSNQPQKIPPVVGYFPSGFDPHKDADKEQSHSVRARVYKHRNKPNRMQLVVS
        MA+DTKS+E EENH     A+SQSPAKKKKKSEKKKKRVLSM+AKIQVLSNQPQK PPVVGYFPSGFDPHKDADKEQS SVRARVYKH+N+PNRMQLVVS
Subjt:  MAEDTKSLEFEENHNAEPDANSQSPAKKKKKSEKKKKRVLSMNAKIQVLSNQPQKIPPVVGYFPSGFDPHKDADKEQSHSVRARVYKHRNKPNRMQLVVS

Query:  PTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMILRLDPKVRGSDVSENESPSVANEELSLQEKANRMRELTALYGTKKSKKQAQK
        PTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMI RLDPKVRGSDV+ENESPSVANEELS Q+KANRMRELTALYGTKKSKKQAQK
Subjt:  PTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMILRLDPKVRGSDVSENESPSVANEELSLQEKANRMRELTALYGTKKSKKQAQK

Query:  LHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEIARNIPAYNASATTPQEVYPLDKIILKGEWSFLEDLYFRLRETAEINATYPSFVRNRIYKLQDI
        LHALKQEDDPETK+DLDGRMKNVVVNKEALEGTQAE+ARNIPAYNASATTPQE YPLDKIILKGEWSFLEDLYFRL+ETAEI+ATYPSFVRNRIYKLQDI
Subjt:  LHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEIARNIPAYNASATTPQEVYPLDKIILKGEWSFLEDLYFRLRETAEINATYPSFVRNRIYKLQDI

Query:  QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPYDLR
        QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVL+LFADEFSSDPADIAKDLRTSPYDLR
Subjt:  QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPYDLR

Query:  LHFDNLGCKFIRKNNLSLATLPVPLQFPELRQKRRR
        LHFDNLGCKFIRKNNLSLATLP+PLQFPELRQKRRR
Subjt:  LHFDNLGCKFIRKNNLSLATLPVPLQFPELRQKRRR

A0A1S3CH93 DNA-directed RNA polymerase I subunit rpa49

3.4e-242

100

Show/hide

Query:  MAEDTKSLEFEENHNAEPDANSQSPAKKKKKSEKKKKRVLSMNAKIQVLSNQPQKIPPVVGYFPSGFDPHKDADKEQSHSVRARVYKHRNKPNRMQLVVS
        MAEDTKSLEFEENHNAEPDANSQSPAKKKKKSEKKKKRVLSMNAKIQVLSNQPQKIPPVVGYFPSGFDPHKDADKEQSHSVRARVYKHRNKPNRMQLVVS
Subjt:  MAEDTKSLEFEENHNAEPDANSQSPAKKKKKSEKKKKRVLSMNAKIQVLSNQPQKIPPVVGYFPSGFDPHKDADKEQSHSVRARVYKHRNKPNRMQLVVS

Query:  PTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMILRLDPKVRGSDVSENESPSVANEELSLQEKANRMRELTALYGTKKSKKQAQK
        PTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMILRLDPKVRGSDVSENESPSVANEELSLQEKANRMRELTALYGTKKSKKQAQK
Subjt:  PTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMILRLDPKVRGSDVSENESPSVANEELSLQEKANRMRELTALYGTKKSKKQAQK

Query:  LHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEIARNIPAYNASATTPQEVYPLDKIILKGEWSFLEDLYFRLRETAEINATYPSFVRNRIYKLQDI
        LHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEIARNIPAYNASATTPQEVYPLDKIILKGEWSFLEDLYFRLRETAEINATYPSFVRNRIYKLQDI
Subjt:  LHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEIARNIPAYNASATTPQEVYPLDKIILKGEWSFLEDLYFRLRETAEINATYPSFVRNRIYKLQDI

Query:  QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPYDLR
        QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPYDLR
Subjt:  QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPYDLR

Query:  LHFDNLGCKFIRKNNLSLATLPVPLQFPELRQKRRR
        LHFDNLGCKFIRKNNLSLATLPVPLQFPELRQKRRR
Subjt:  LHFDNLGCKFIRKNNLSLATLPVPLQFPELRQKRRR

A0A5D3BXN3 DNA-directed RNA polymerase I subunit rpa49

1.7e-241

99.77

Show/hide

Query:  MAEDTKSLEFEENHNAEPDANSQSPAKKKKKSEKKKKRVLSMNAKIQVLSNQPQKIPPVVGYFPSGFDPHKDADKEQSHSVRARVYKHRNKPNRMQLVVS
        MAEDTKSLE EENHNAEPDANSQSPAKKKKKSEKKKKRVLSMNAKIQVLSNQPQKIPPVVGYFPSGFDPHKDADKEQSHSVRARVYKHRNKPNRMQLVVS
Subjt:  MAEDTKSLEFEENHNAEPDANSQSPAKKKKKSEKKKKRVLSMNAKIQVLSNQPQKIPPVVGYFPSGFDPHKDADKEQSHSVRARVYKHRNKPNRMQLVVS

Query:  PTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMILRLDPKVRGSDVSENESPSVANEELSLQEKANRMRELTALYGTKKSKKQAQK
        PTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMILRLDPKVRGSDVSENESPSVANEELSLQEKANRMRELTALYGTKKSKKQAQK
Subjt:  PTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMILRLDPKVRGSDVSENESPSVANEELSLQEKANRMRELTALYGTKKSKKQAQK

Query:  LHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEIARNIPAYNASATTPQEVYPLDKIILKGEWSFLEDLYFRLRETAEINATYPSFVRNRIYKLQDI
        LHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEIARNIPAYNASATTPQEVYPLDKIILKGEWSFLEDLYFRLRETAEINATYPSFVRNRIYKLQDI
Subjt:  LHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEIARNIPAYNASATTPQEVYPLDKIILKGEWSFLEDLYFRLRETAEINATYPSFVRNRIYKLQDI

Query:  QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPYDLR
        QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPYDLR
Subjt:  QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPYDLR

Query:  LHFDNLGCKFIRKNNLSLATLPVPLQFPELRQKRRR
        LHFDNLGCKFIRKNNLSLATLPVPLQFPELRQKRRR
Subjt:  LHFDNLGCKFIRKNNLSLATLPVPLQFPELRQKRRR

A0A6J1GQS4 DNA-directed RNA polymerase I subunit rpa49-like

4.1e-203

83.37

Show/hide

Query:  MAEDTKSLEFEENHNAEPDANSQSPAKKKKKSEKKKKRVLSMNAKIQVLSNQPQKIPPVVGYFPSGFDPHKDADK---EQSHSVRARVYKHRNKPNRMQL
        MAEDTKS E E+NH +EPD+N QSPAKKKKKSEKKKKRV S+NAKIQVLSN PQK PP+V YFPSGFDPHKD ++   E+  SVRARVY+H+NKPNRMQL
Subjt:  MAEDTKSLEFEENHNAEPDANSQSPAKKKKKSEKKKKRVLSMNAKIQVLSNQPQKIPPVVGYFPSGFDPHKDADK---EQSHSVRARVYKHRNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMILRLDPKVRGSDVSENESPSVANEELSLQEKANRMRELTALYGTKKSKKQ
        VVSPTGSNVDFVGTNYLGEATAGKQHC+Y LGVLDKATQSLKIVPIASNMI RLDP++RGSDVSE ESPSV NEELS+QEKA +MRELT LYGTKKS  Q
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMILRLDPKVRGSDVSENESPSVANEELSLQEKANRMRELTALYGTKKSKKQ

Query:  AQKLHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEIARNIPAYNASATTPQEVYPLDKIILKGEWSFLEDLYFRLRETAEINATYPSFVRNRIYKL
        A+KL +LKQEDDP+TK DLDG+MKNVVVNKEALE T A+IARNIP YN SATTP+E YPLDKIILKGEWS+LEDLY  L+E AEI+A YPSFVRNRIYKL
Subjt:  AQKLHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEIARNIPAYNASATTPQEVYPLDKIILKGEWSFLEDLYFRLRETAEINATYPSFVRNRIYKL

Query:  QDIQDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPY
        QD+QDEEEKK+LC IFSYITHLIKYKDQHSMGDV+SAK HK PSM+RQKFSSMFPT+E+RRLS + INLLISHVLVLTLFADEFSSDP+DIAKDLRTSPY
Subjt:  QDIQDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPY

Query:  DLRLHFDNLGCKFIRKNNLSLATLPVPLQFPELRQKRRR
        DLRLHFDNLGCKFIRKNNLSL TLP PL+FPELRQKRRR
Subjt:  DLRLHFDNLGCKFIRKNNLSLATLPVPLQFPELRQKRRR

A0A6J1JX25 DNA-directed RNA polymerase I subunit rpa49-like

9.7e-205

84.05

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Query:  MAEDTKSLEFEENHNAEPDANSQSPAKKKKKSEKKKKRVLSMNAKIQVLSNQPQKIPPVVGYFPSGFDPHKDADK---EQSHSVRARVYKHRNKPNRMQL
        MAEDTKS E E+NH +EPDANSQSPAKKKKKSEKKKKRV S+NAKIQVLSN PQK PP+V YFPSGFDPHKDA++   E+  SVRARVY+H+NKPNRMQL
Subjt:  MAEDTKSLEFEENHNAEPDANSQSPAKKKKKSEKKKKRVLSMNAKIQVLSNQPQKIPPVVGYFPSGFDPHKDADK---EQSHSVRARVYKHRNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMILRLDPKVRGSDVSENESPSVANEELSLQEKANRMRELTALYGTKKSKKQ
        VVSPTGSNVDFVGTNYLGEATAGKQHC+Y LGVLDKATQSLKIVPIASNMI RLDP++RGSDVSE ES SV NEELS+QEKA +MRELT LYGTKKS  Q
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMILRLDPKVRGSDVSENESPSVANEELSLQEKANRMRELTALYGTKKSKKQ

Query:  AQKLHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEIARNIPAYNASATTPQEVYPLDKIILKGEWSFLEDLYFRLRETAEINATYPSFVRNRIYKL
        A+KLH+LKQEDDP+TK DLDG+MKNVVVNKEALE T A+IARNIP YN SATTP+E YPLDKIILKGEWSFLED+Y  L+E AEI+A YPSFVRNRIYKL
Subjt:  AQKLHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEIARNIPAYNASATTPQEVYPLDKIILKGEWSFLEDLYFRLRETAEINATYPSFVRNRIYKL

Query:  QDIQDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPY
        QD+QDEEEKK+LC IFSYITHLIKYKDQHSMGDV+SAK HK PSM+RQKFSSMFPT+E+RRLS + INLLISHVLVLTLFADEFSSDP+DIAKDLRTSPY
Subjt:  QDIQDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPY

Query:  DLRLHFDNLGCKFIRKNNLSLATLPVPLQFPELRQKRRR
        DLRLHFDNLGCKFIRKNNLSL TLP PL+FPELRQKRRR
Subjt:  DLRLHFDNLGCKFIRKNNLSLATLPVPLQFPELRQKRRR

SwissProt top hits

e value

%identity

Alignment

O14086 DNA-directed RNA polymerase I subunit rpa49

3.9e-09

25.11

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Query:  KKKSEKKKKRVLSMNAKIQVLSNQPQKIPPVVGYFPSGFDPHKDADKEQSHSVRARVYKHRNKPNRMQLVVSPTGSNVDFVGTNYLGEATAGKQHCTYAL
        K K  K +         +++L      +PP+V    SGF P          + R ++ K  N+ NR   ++  T   V F   N   ++TA  +   Y L
Subjt:  KKKSEKKKKRVLSMNAKIQVLSNQPQKIPPVVGYFPSGFDPHKDADKEQSHSVRARVYKHRNKPNRMQLVVSPTGSNVDFVGTNYLGEATAGKQHCTYAL

Query:  GVLDKATQSLKIVPIA-----SNMILRLDPKVRGSDVSENESPSVANEELSLQEKANRMRELTALYGTKKSKKQAQKLHALKQEDDPETKNDL-DGRMKN
         V DK  +  KIVP          IL L  K       + +  +V+     ++++AN    L   +GT+KS+K   +  A + +   ET  D+ D  + N
Subjt:  GVLDKATQSLKIVPIA-----SNMILRLDPKVRGSDVSENESPSVANEELSLQEKANRMRELTALYGTKKSKKQAQKLHALKQEDDPETKNDL-DGRMKN

Query:  VVVNKEALEGTQAEIA------RNIPAYNASATTPQEVYPLDKIILKGEWS--FLEDLYFRLRE---TAEINATYPSFVRNRIYKLQDIQDEEEKKKLCC
        V    EAL  TQ +IA      R IP  N  A + ++ Y L+ II K E+S  +++ L     E      +   +  F+  R  +L  I++ ++K+    
Subjt:  VVVNKEALEGTQAEIA------RNIPAYNASATTPQEVYPLDKIILKGEWS--FLEDLYFRLRE---TAEINATYPSFVRNRIYKLQDIQDEEEKKKLCC

Query:  IFSYITHLIKYK-DQHSMGDVSSAKGHKI--PSMLRQKFSSMFPTAE---SRRLSADKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPYDLRLHFDN
        I  YI+ L  +   + S+G+  + +      P +L       F       S ++S+ +++ +I ++LVL L  D +S+D   +A DL          F  
Subjt:  IFSYITHLIKYK-DQHSMGDVSSAKGHKI--PSMLRQKFSSMFPTAE---SRRLSADKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPYDLRLHFDN

Query:  LGCKFIR---------------KNNLSLATLPVPLQFPELRQKRRR
        +GC+ +                  N   A L +PL+FP+ R+ R R
Subjt:  LGCKFIR---------------KNNLSLATLPVPLQFPELRQKRRR

Q54FE8 DNA-directed RNA polymerase I subunit rpa49

2.4e-11

22.72

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Query:  PVVGYFPSGFDPHKDADKEQSHSVRARVYKHRNKPNRMQLVVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMILRLDPKVRG
        P V  F  G  P    +KE      +     +NK +R+ L      +N D +   Y  E    K +  YA+G+ DK T+ LKIVP     I  ++  V G
Subjt:  PVVGYFPSGFDPHKDADKEQSHSVRARVYKHRNKPNRMQLVVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMILRLDPKVRG

Query:  SDVSENESPSVANEELSLQEKANRMRELTALYGTKKSKKQAQKLHALKQE--DDPETKNDLDGRMKNVVVNKEALEGTQAEIARNIPAYNASATTPQEVY
          ++ + S  ++ E     E+ +++++L   +G+K +KK+ QK+     E  D  +T   +D       V  E  +    E   ++P ++A     +++Y
Subjt:  SDVSENESPSVANEELSLQEKANRMRELTALYGTKKSKKQAQKLHALKQE--DDPETKNDLDGRMKNVVVNKEALEGTQAEIARNIPAYNASATTPQEVY

Query:  PLDKIILKGEWSFLEDLYFR--LRETAEINATYPSFVRNRIYKLQDIQDEEEKKKLCCIFSYITH---LIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSM
         ++ I+    +  L    F   + +T+E  +  P + ++++ + +DI+DEE+    C + +++ +   L+K K  H    +      ++ + L   F S 
Subjt:  PLDKIILKGEWSFLEDLYFR--LRETAEINATYPSFVRNRIYKLQDIQDEEEKKKLCCIFSYITH---LIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSM

Query:  FPTAESRRLSADKINLLISHVLVLTLFADEFS-SDPADIAKDLRTSPYDLRLHFDNLGCKFIRKNNLSLAT-LPVPLQFPELR
            +      DK+  + +++ +  L  ++F  +D   +A+ L  +      HF  +GCK +R  +   +  L  PL+ P+ R
Subjt:  FPTAESRRLSADKINLLISHVLVLTLFADEFS-SDPADIAKDLRTSPYDLRLHFDNLGCKFIRKNNLSLAT-LPVPLQFPELR

Arabidopsis top hits

e value

%identity

Alignment

AT3G13940.1 DNA binding;DNA-directed RNA polymerases

1.5e-96

44.9

Show/hide

Query:  EFEENHNAEPDANSQSPAKKKKKSEKK--------KKRVLSMNAKIQVLSNQPQKIPPVVGYFPSGFDPHK---DADKEQSHSVRARVYKHR-NKPNRMQ
        E  +  N E D N+    +KK++  KK         +    +  K+  ++ +P +I P+V YF +G+DP K      K    + +  VYKH+ +   R+Q
Subjt:  EFEENHNAEPDANSQSPAKKKKKSEKK--------KKRVLSMNAKIQVLSNQPQKIPPVVGYFPSGFDPHK---DADKEQSHSVRARVYKHR-NKPNRMQ

Query:  LVVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMILRLDPKVRGSDVSENE-SPSVANEELSLQEKANRMRELTALYGTKKSK
        +VVSP G+ V+FVGTNY GE  A  Q  TY +GV ++  ++L+I+P+A N I+RL+P+V+  + +E E S S   +EL   +   R R     Y TKK+ 
Subjt:  LVVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMILRLDPKVRGSDVSENE-SPSVANEELSLQEKANRMRELTALYGTKKSK

Query:  KQAQKLHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEIARNIPAYNASATTPQEVYPLDKIILKGEWSFLEDLYFRL-RETAEINATYPSFVRNRI
         + +K  AL   DD  T+  LDG++  + VN  ALEGT + +ARNIP YN +ATT  E YPL+KII KG+WSFLED+Y+ L +ET      YP FVRNR+
Subjt:  KQAQKLHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEIARNIPAYNASATTPQEVYPLDKIILKGEWSFLEDLYFRL-RETAEINATYPSFVRNRI

Query:  YKLQDIQDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLTLFADEFSSDPADIAKDLRT
        Y+L+DI+D+ +K+ +C   + +THL+K+KD++SM    SAK HK+P + RQKF+SMF  +ES R+  DKINLLIS+VLVL+L  D F +DP DIAKDLR 
Subjt:  YKLQDIQDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLTLFADEFSSDPADIAKDLRT

Query:  SPYDLRLHFDNLGCKFIRKNNLSLATLPVPLQFPELRQKRR
        S  +LR HF  LGCKF+++N+ ++ATLP PL FPE+ ++RR
Subjt:  SPYDLRLHFDNLGCKFIRKNNLSLATLPVPLQFPELRQKRR

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCGGAAGACACGAAATCTCTTGAATTTGAAGAAAACCATAACGCAGAACCAGACGCAAACTCACAGTCTCCAGCGAAGAAGAAGAAGAAGAGTGAAAAGAAGAAGAA
ACGAGTTCTATCAATGAATGCTAAAATCCAAGTTCTCAGCAACCAGCCCCAGAAAATTCCGCCGGTAGTTGGTTATTTCCCGTCTGGGTTTGATCCTCACAAGGATGCTG
ACAAGGAACAGTCCCATTCTGTAAGGGCTAGGGTTTATAAGCACAGGAACAAACCAAATAGGATGCAGCTGGTTGTGAGTCCAACAGGGTCGAATGTGGATTTTGTTGGT
ACCAATTATTTAGGCGAGGCTACCGCTGGGAAACAGCATTGCACCTATGCTCTGGGTGTTCTTGATAAGGCCACACAAAGCTTAAAGATAGTGCCTATTGCATCGAATAT
GATACTTAGATTAGACCCAAAAGTCAGAGGTTCAGACGTTTCTGAAAATGAATCCCCAAGTGTGGCAAATGAAGAGCTCTCTCTGCAGGAGAAAGCTAATAGAATGAGAG
AGCTCACCGCACTCTATGGAACAAAGAAGTCAAAAAAACAGGCACAGAAGCTGCATGCATTGAAGCAAGAGGATGATCCTGAAACCAAGAACGATCTAGATGGGAGAATG
AAAAATGTGGTGGTAAACAAAGAGGCCTTGGAAGGTACGCAGGCAGAGATTGCTCGTAATATACCAGCATACAATGCTTCTGCAACTACTCCACAAGAAGTTTACCCGCT
CGACAAGATTATCCTCAAGGGAGAATGGAGTTTTCTGGAAGATCTTTATTTCCGTTTGCGAGAAACAGCTGAAATAAATGCTACTTATCCTTCTTTTGTTCGCAACAGAA
TTTATAAATTGCAAGACATTCAGGACGAGGAAGAGAAAAAGAAGCTCTGCTGCATATTTTCATATATCACTCATCTGATAAAGTATAAGGATCAGCATTCTATGGGTGAT
GTTTCTTCTGCAAAGGGTCATAAAATTCCCAGCATGCTACGCCAAAAGTTCTCATCCATGTTTCCAACTGCCGAGTCGAGAAGACTGTCAGCAGATAAAATTAATCTTCT
CATTAGCCACGTTTTGGTGCTTACGCTATTTGCCGATGAATTCAGCAGCGATCCTGCAGACATAGCAAAGGATTTGAGAACTAGTCCTTACGATCTAAGACTCCATTTTG
ATAATTTGGGTTGCAAGTTTATACGCAAGAACAACTTGTCATTGGCTACACTTCCTGTTCCTCTTCAATTTCCCGAGTTGAGGCAAAAGCGACGACGATAG

mRNA sequence

Show/hide mRNA sequence

GAAGAAAAAGCCCCTAAACCCTTCGTTCCCCCCCCCCCCCCCCCCGCCCACTTCCTCTCTCTTCTTCTCTCATATTTTTTTGCCGCCACGCCTCTCAGGCCGCCACGCCA
ACCACCAATCGCCGTCGATCGTGTCTTGCTTCAACCGCTGCAGCCGCCCCCAGTACCGACGGAAAATAAGTCTCCGCCGTCGTTCATTGCTGTCGGACTGTAATTCCCGA
AGCCACTTCCTTCCTGTCCGGATTCTTCGGATTGATATCTTGAAATTTAGAGTTCGTCGACGGAATCAATGGCGGAAGACACGAAATCTCTTGAATTTGAAGAAAACCAT
AACGCAGAACCAGACGCAAACTCACAGTCTCCAGCGAAGAAGAAGAAGAAGAGTGAAAAGAAGAAGAAACGAGTTCTATCAATGAATGCTAAAATCCAAGTTCTCAGCAA
CCAGCCCCAGAAAATTCCGCCGGTAGTTGGTTATTTCCCGTCTGGGTTTGATCCTCACAAGGATGCTGACAAGGAACAGTCCCATTCTGTAAGGGCTAGGGTTTATAAGC
ACAGGAACAAACCAAATAGGATGCAGCTGGTTGTGAGTCCAACAGGGTCGAATGTGGATTTTGTTGGTACCAATTATTTAGGCGAGGCTACCGCTGGGAAACAGCATTGC
ACCTATGCTCTGGGTGTTCTTGATAAGGCCACACAAAGCTTAAAGATAGTGCCTATTGCATCGAATATGATACTTAGATTAGACCCAAAAGTCAGAGGTTCAGACGTTTC
TGAAAATGAATCCCCAAGTGTGGCAAATGAAGAGCTCTCTCTGCAGGAGAAAGCTAATAGAATGAGAGAGCTCACCGCACTCTATGGAACAAAGAAGTCAAAAAAACAGG
CACAGAAGCTGCATGCATTGAAGCAAGAGGATGATCCTGAAACCAAGAACGATCTAGATGGGAGAATGAAAAATGTGGTGGTAAACAAAGAGGCCTTGGAAGGTACGCAG
GCAGAGATTGCTCGTAATATACCAGCATACAATGCTTCTGCAACTACTCCACAAGAAGTTTACCCGCTCGACAAGATTATCCTCAAGGGAGAATGGAGTTTTCTGGAAGA
TCTTTATTTCCGTTTGCGAGAAACAGCTGAAATAAATGCTACTTATCCTTCTTTTGTTCGCAACAGAATTTATAAATTGCAAGACATTCAGGACGAGGAAGAGAAAAAGA
AGCTCTGCTGCATATTTTCATATATCACTCATCTGATAAAGTATAAGGATCAGCATTCTATGGGTGATGTTTCTTCTGCAAAGGGTCATAAAATTCCCAGCATGCTACGC
CAAAAGTTCTCATCCATGTTTCCAACTGCCGAGTCGAGAAGACTGTCAGCAGATAAAATTAATCTTCTCATTAGCCACGTTTTGGTGCTTACGCTATTTGCCGATGAATT
CAGCAGCGATCCTGCAGACATAGCAAAGGATTTGAGAACTAGTCCTTACGATCTAAGACTCCATTTTGATAATTTGGGTTGCAAGTTTATACGCAAGAACAACTTGTCAT
TGGCTACACTTCCTGTTCCTCTTCAATTTCCCGAGTTGAGGCAAAAGCGACGACGATAGGCGTGATGGCTGGATTATAGAAGTTTCACTTTTATTGTTGTTGAAGAAGCT
GAATTCTTTCTAGGCAGCAAAGTTGGAGCAATTTTGTGGAGTGAAACGGGTAAATGGTCATTTTTGTAATTCAGATGTTATTTCTTTCGTATTGCAAATGGCAATGCCAA
CTTGTTTATCTATGAAGTACTTCTGCTTAGAAAGGTGTTTCATTATTTGGAAGTTGAAACTTTGGATAATCACAAATTTATTTGGAAACAAGTCAAATGACTTTTCTTTT
TTATCTTACAAA

Protein sequence

Show/hide protein sequence

MAEDTKSLEFEENHNAEPDANSQSPAKKKKKSEKKKKRVLSMNAKIQVLSNQPQKIPPVVGYFPSGFDPHKDADKEQSHSVRARVYKHRNKPNRMQLVVSPTGSNVDFVG
TNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMILRLDPKVRGSDVSENESPSVANEELSLQEKANRMRELTALYGTKKSKKQAQKLHALKQEDDPETKNDLDGRM
KNVVVNKEALEGTQAEIARNIPAYNASATTPQEVYPLDKIILKGEWSFLEDLYFRLRETAEINATYPSFVRNRIYKLQDIQDEEEKKKLCCIFSYITHLIKYKDQHSMGD
VSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPYDLRLHFDNLGCKFIRKNNLSLATLPVPLQFPELRQKRRR

MELO3C024372 (gene) of Melon (DHL92) v4 genome